Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0009963g0020 Nicotiana tabacum HOM05D002908 ORTHO05D007390 2.3e-204 715.3 353 100.0
Nitab4.5_0000351g0020 Nicotiana tabacum HOM05D002908 ORTHO05D007390 2.8e-194 681.8 353 95.2
Sopen06g024840 Solanum pennellii HOM05D002908 ORTHO05D007390 4.7e-189 664.5 354 92.7
Solyc06g066570.4 Solanum lycopersicum HOM05D002908 ORTHO05D007390 6.1e-189 664.1 354 92.7
PGSC0003DMG400016501 Solanum tuberosum HOM05D002908 ORTHO05D007390 4.8e-186 654.4 350 92.0
CAN.G1152.12 Capsicum annuum HOM05D002908 ORTHO05D007390 4.2e-182 641.3 355 89.6
Peaxi162Scf00015g00145 Petunia axillaris HOM05D002908 ORTHO05D007390 2.4e-169 599.0 353 83.9
Dinv30470 Davidia involucrata HOM05D002908 ORTHO05D007390 1.8e-164 582.8 355 80.6
Potri.003G051500 Populus trichocarpa HOM05D002908 ORTHO05D007390 3.4e-163 578.6 336 82.1
GSVIVG01017049001 Vitis vinifera HOM05D002908 ORTHO05D007390 1.8e-161 572.8 353 79.0
Actinidia32717 Actinidia chinensis HOM05D002908 ORTHO05D007390 4.1e-161 571.6 355 78.6
Oeu000462.1 Olea europaea HOM05D002908 ORTHO05D007390 7.0e-161 570.9 348 79.9
Thecc.06G094700 Theobroma cacao HOM05D002908 ORTHO05D007390 9.2e-161 570.5 333 82.0
Cc06_g20260 Coffea canephora HOM05D002908 ORTHO05D007390 5.9e-160 567.8 332 81.9
CSS0023180 Camellia sinensis var. sinensis HOM05D002908 ORTHO05D007390 5.0e-159 564.7 330 82.1
Cfa002106 Carpinus fangiana HOM05D002908 ORTHO05D007390 1.1e-158 563.5 335 81.8
Ciclev10026026m.g Citrus clementina HOM05D002908 ORTHO05D007390 1.5e-158 563.1 324 82.4
Potri.001G186000 Populus trichocarpa HOM05D002908 ORTHO05D007390 1.9e-158 562.8 333 80.8
AUR62011685 Chenopodium quinoa HOM05D002908 ORTHO05D007390 5.6e-158 561.2 353 76.8
MSTRG.4742 Avicennia marina HOM05D002908 ORTHO05D007390 1.2e-157 560.1 346 77.5
TWI18G0563 Tripterygium wilfordii HOM05D002908 ORTHO05D007390 1.2e-157 560.1 338 79.3
MD09G1208200 Malus domestica HOM05D002908 ORTHO05D007390 2.1e-157 559.3 333 80.5
Atru.chr1.3416 Acer truncatum HOM05D002908 ORTHO05D007390 6.1e-157 557.8 335 80.9
Migut.D01011 Erythranthe guttata HOM05D002908 ORTHO05D007390 6.1e-157 557.8 348 79.3
COL.COLO4_30459 Corchorus olitorius HOM05D002908 ORTHO05D007390 1.0e-156 557.0 345 78.0
CANSAT56G3591 Cannabis sativa HOM05D002908 ORTHO05D007390 2.3e-156 555.8 335 80.3
Duzib235G0543 Durio zibethinus HOM05D002908 ORTHO05D007390 2.3e-156 555.8 339 79.1
Phvul.010G147500 Phaseolus vulgaris HOM05D002908 ORTHO05D007390 2.3e-156 555.8 323 82.7
Lalb_Chr01g0013051 Lupinus albus HOM05D002908 ORTHO05D007390 3.0e-156 555.4 327 82.0
Gorai.010G229600 Gossypium raimondii HOM05D002908 ORTHO05D007390 5.2e-156 554.7 334 79.9
MD17G1189500 Malus domestica HOM05D002908 ORTHO05D007390 5.2e-156 554.7 338 79.3
RcHm_v2.0_Chr2g0139271 Rosa chinensis HOM05D002908 ORTHO05D007390 8.9e-156 553.9 349 78.8
VMungo0331G0294 Vigna mungo HOM05D002908 ORTHO05D007390 8.9e-156 553.9 323 82.4
HanXRQChr12g0360831 Helianthus annuus HOM05D002908 ORTHO05D007390 2.0e-155 552.7 344 78.2
arahy.Tifrunner.gnm1.ann1.0NGS5F Arachis hypogaea HOM05D002908 ORTHO05D007390 2.6e-155 552.4 322 81.4
FvH4_6g31910 Fragaria vesca HOM05D002908 ORTHO05D007390 2.6e-155 552.4 352 78.1
FAN02G4032 Fragaria x ananassa HOM05D002908 ORTHO05D007390 2.6e-155 552.4 350 78.6
FAN14G2394 Fragaria x ananassa HOM05D002908 ORTHO05D007390 2.6e-155 552.4 352 78.1
Glyma.08G203400 Glycine max HOM05D002908 ORTHO05D007390 2.6e-155 552.4 325 80.9
vmacro18877 Vaccinium macrocarpon HOM05D002908 ORTHO05D007390 2.6e-155 552.4 326 80.4
arahy.Tifrunner.gnm1.ann1.E6TYPI Arachis hypogaea HOM05D002908 ORTHO05D007390 4.4e-155 551.6 348 77.0
Manes.04G131100 Manihot esculenta HOM05D002908 ORTHO05D007390 4.4e-155 551.6 330 79.7
MBI04_g14938_MAGBIO Magnolia biondii HOM05D002908 ORTHO05D007390 5.7e-155 551.2 350 77.7
Sabra03G0027500 Salix brachista HOM05D002908 ORTHO05D007390 7.5e-155 550.8 360 75.3
SGA_v2.0_scaffold68G22970 Striga asiatica HOM05D002908 ORTHO05D007390 9.8e-155 550.4 349 76.8
QL05p021375 Quercus lobata HOM05D002908 ORTHO05D007390 1.3e-154 550.1 344 77.9
Duzib192G0943 Durio zibethinus HOM05D002908 ORTHO05D007390 1.7e-154 549.7 350 76.0
EL10Ac9g22051 Beta vulgaris HOM05D002908 ORTHO05D007390 2.9e-154 548.9 351 75.8
Medtr8g013660 Medicago truncatula HOM05D002908 ORTHO05D007390 2.9e-154 548.9 333 80.5
Ca_11526_v3 Cicer arietinum L. HOM05D002908 ORTHO05D007390 3.7e-154 548.5 331 80.7
FAN09G2740 Fragaria x ananassa HOM05D002908 ORTHO05D007390 4.9e-154 548.1 350 78.6
Lsat_1_v5_gn_5_131021 Lactuca sativa HOM05D002908 ORTHO05D007390 6.4e-154 547.7 343 77.0
ECA234G0421 Erigeron canadensis HOM05D002908 ORTHO05D007390 8.3e-154 547.4 326 79.4
Gorai.011G073300 Gossypium raimondii HOM05D002908 ORTHO05D007390 1.1e-153 547.0 333 79.3
Manes.11G036900 Manihot esculenta HOM05D002908 ORTHO05D007390 1.1e-153 547.0 329 79.3
TPR.G14821 Trifolium pratense HOM05D002908 ORTHO05D007390 1.1e-153 547.0 330 80.6
TAR624G0208 Trochodendron aralioides HOM05D002908 ORTHO05D007390 1.1e-153 547.0 346 77.7
Glyma.07G018400 Glycine max HOM05D002908 ORTHO05D007390 1.8e-153 546.2 325 81.2
Nn2g11662 Nelumbo nucifera HOM05D002908 ORTHO05D007390 1.8e-153 546.2 355 75.2
Eucgr.J02953 Eucalyptus grandis HOM05D002908 ORTHO05D007390 3.2e-153 545.4 316 82.3
Actinidia21691 Actinidia chinensis HOM05D002908 ORTHO05D007390 5.4e-153 544.7 328 80.5
Sc15g0002180 Simmondsia chinensis HOM05D002908 ORTHO05D007390 5.4e-153 544.7 343 75.8
PGR102G0394 Punica granatum HOM05D002908 ORTHO05D007390 1.0e-151 540.4 317 82.3
SGA_v2.0_scaffold4G02012 Striga asiatica HOM05D002908 ORTHO05D007390 1.3e-151 540.0 348 76.1
HanXRQChr04g0096211 Helianthus annuus HOM05D002908 ORTHO05D007390 1.9e-150 536.2 344 76.2
Aqoxy7G01537 Aquilegia oxysepala HOM05D002908 ORTHO05D007390 5.6e-150 534.6 350 74.9
TAR636G3411 Trochodendron aralioides HOM05D002908 ORTHO05D007390 9.5e-150 533.9 353 74.2
Sed0011260 Sechium edule HOM05D002908 ORTHO05D007390 3.6e-149 531.9 318 80.2
ClCG07G013190 Citrullus lanatus HOM05D002908 ORTHO05D007390 4.7e-149 531.6 318 80.2
CsaV3_3G023830 Cucumis sativus L. HOM05D002908 ORTHO05D007390 2.3e-148 529.3 317 80.1
MELO3C012977.2 Cucumis melo HOM05D002908 ORTHO05D007390 6.8e-148 527.7 317 80.1
THA.LOC104813553 Tarenaya hassleriana HOM05D002908 ORTHO05D007390 1.2e-147 526.9 332 75.3
CARHR074760 Cardamine hirsuta HOM05D002908 ORTHO05D007390 8.3e-146 520.8 322 76.7
Sp5g35950 Schrenkiella parvula HOM05D002908 ORTHO05D007390 4.6e-144 515.0 322 76.1
AL2G41740 Arabidopsis lyrata HOM05D002908 ORTHO05D007390 3.0e-143 512.3 322 76.1
AT1G79810 Arabidopsis thaliana HOM05D002908 ORTHO05D007390 3.9e-143 511.9 323 75.9
CDE05G0315 Ceratophyllum demersum HOM05D002908 ORTHO05D007390 3.9e-143 511.9 344 71.5
Lj5C318G10 Lonicera japonica HOM05D002908 ORTHO05D007390 5.0e-143 511.5 310 80.0
A07p26340 Brassica napus HOM05D002908 ORTHO05D007390 2.5e-142 509.2 323 75.5
BraA07t30278Z Brassica rapa HOM05D002908 ORTHO05D007390 2.5e-142 509.2 323 75.5
Hund00658 Selenicereus undatus HOM05D002908 ORTHO05D007390 2.5e-142 509.2 343 71.4
PSO566G0119 Papaver somniferum HOM05D002908 ORTHO05D007390 5.6e-142 508.1 343 74.3
Os05g0275700 Oryza sativa ssp. japonica HOM05D002908 ORTHO05D007390 9.5e-142 507.3 342 73.1
Carub.0002s2769 Capsella rubella HOM05D002908 ORTHO05D007390 1.2e-141 506.9 322 75.8
PSO782G2745 Papaver somniferum HOM05D002908 ORTHO05D007390 1.2e-141 506.9 343 74.1
BolC6t38042H Brassica oleracea HOM05D002908 ORTHO05D007390 2.8e-141 505.8 323 75.2
AUR62016511 Chenopodium quinoa HOM05D002908 ORTHO05D007390 2.8e-141 505.8 306 80.4
C06p28730 Brassica napus HOM05D002908 ORTHO05D007390 3.6e-141 505.4 319 75.9
HPP92_002914 Vanilla planifolia HOM05D002908 ORTHO05D007390 3.6e-141 505.4 328 74.4
Thhalv10018845m.g Eutrema salsugineum HOM05D002908 ORTHO05D007390 4.7e-141 505.0 322 75.5
Rhsim08G0224800 Rhododendron simsii HOM05D002908 ORTHO05D007390 4.0e-140 501.9 350 73.1
Haze_16343 Corylus avellana HOM05D002908 ORTHO05D007390 7.5e-139 497.7 292 82.9
unitig_736.g22790 Utricularia gibba HOM05D002908 ORTHO05D007390 4.9e-138 495.0 357 68.3
ATR0315G165 Amborella trichopoda HOM05D002908 ORTHO05D007390 3.5e-136 488.8 331 71.3
Aa31LG4G20 Aethionema arabicum HOM05D002908 ORTHO05D007390 6.0e-136 488.0 372 66.1
Hund06642 Selenicereus undatus HOM05D002908 ORTHO05D007390 1.3e-135 486.9 310 77.1
Lj3g0013088 Lotus japonicus HOM05D002908 ORTHO05D007390 3.9e-135 485.3 290 80.3
Sabra01G0154100 Salix brachista HOM05D002908 ORTHO05D007390 1.5e-131 473.4 320 75.0
Zm00001eb031430 Zea mays HOM05D002908 ORTHO05D007390 5.8e-131 471.5 289 78.9
SalBow7G1474 Salvia bowleyana HOM05D002908 ORTHO05D007390 2.7e-128 462.6 363 66.7
DCAR_026336 Daucus carota HOM05D002908 ORTHO05D007390 1.3e-127 460.3 348 68.7
Gohir.D06G197300 Gossypium hirsutum HOM05D002908 ORTHO05D007390 1.3e-127 460.3 267 82.0
Prupe.3G064400 Prunus persica HOM05D002908 ORTHO05D007390 3.0e-127 459.1 255 83.9
Gohir.A06G188700 Gossypium hirsutum HOM05D002908 ORTHO05D007390 6.6e-127 458.0 267 81.6
CiPaw.02G148100 Carya illinoinensis HOM05D002908 ORTHO05D007390 5.8e-123 444.9 265 79.2
Lsat_1_v5_gn_1_35361 Lactuca sativa HOM05D002908 ORTHO05D007390 1.5e-118 430.3 273 77.3
Gohir.D10G068700 Gossypium hirsutum HOM05D002908 ORTHO05D007390 4.0e-116 422.2 267 76.0
CiPaw.01G234600 Carya illinoinensis HOM05D002908 ORTHO05D007390 6.7e-111 404.8 232 82.3
Dinv38008 Davidia involucrata HOM05D002908 ORTHO05D007390 1.4e-108 397.1 229 84.7
Pp3c3_18540 Physcomitrium patens HOM05D002908 ORTHO05D007390 6.4e-106 388.3 332 58.4
Mapoly0052s0120 Marchantia polymorpha HOM05D002908 ORTHO05D007390 3.2e-105 386.0 334 58.4
SMO146G0339 Selaginella moellendorffii HOM05D002908 ORTHO05D007390 1.8e-103 380.2 332 58.1
CBR_g960 Chara braunii HOM05D002908 ORTHO05D007390 4.8e-85 318.9 312 53.8
Cpa.g.sc109.47 Carica papaya HOM05D002908 ORTHO05D007390 2.9e-82 309.7 209 74.6
Lalb_Chr25g0280041 Lupinus albus HOM05D002908 ORTHO05D007390 4.6e-80 302.4 277 59.6
SEGI_14821 Sequoiadendron giganteum HOM05D002908 ORTHO05D007390 2.8e-77 293.1 213 64.8
Gohir.A10G083732 Gossypium hirsutum HOM05D002908 ORTHO05D007390 8.2e-77 291.6 174 81.6
AagrBONN_evm.TU.Sc2ySwM_228.2361 Anthoceros agrestis HOM05D002908 ORTHO05D007390 1.6e-64 250.8 218 59.2
Psat4g199400 Pisum sativum HOM05D002908 ORTHO05D007390 8.0e-64 248.4 146 80.1
Sed0019299 Sechium edule HOM05D002908 ORTHO05D007390 9.1e-60 235.0 208 61.5
Solyc03g120520.2 Solanum lycopersicum HOM05D002908 ORTHO05D007390 1.0e-58 231.5 248 52.4
PGSC0003DMG400002631 Solanum tuberosum HOM05D002908 ORTHO05D007390 1.0e-55 221.5 336 45.2
MCO16G131 Micromonas commoda HOM05D002908 ORTHO05D007390 2.0e-54 217.2 361 36.3
Lsat_1_v5_gn_1_85060 Lactuca sativa HOM05D002908 ORTHO05D007390 5.9e-51 205.7 196 57.7
CAN.G438.36 Capsicum annuum HOM05D002908 ORTHO05D007390 2.0e-46 190.7 115 82.6
Cre17.g698800 Chlamydomonas reinhardtii HOM05D002908 ORTHO05D007390 5.7e-46 189.1 408 33.6
SEGI_00949 Sequoiadendron giganteum HOM05D002908 ORTHO05D007390 2.0e-38 164.1 125 62.4
Lj5C56G8 Lonicera japonica HOM05D002908 ORTHO05D007390 9.2e-36 155.2 227 46.3
PRCOL_00006980 Prasinoderma coloniale HOM05D000198 ORTHO05D003232 6.0e-35 152.5 318 35.2
Sopen00g008760 Solanum pennellii HOM05D002908 ORTHO05D007390 2.9e-21 107.1 98 59.2
Rhsim02G0192800 Rhododendron simsii HOM05D002908 ORTHO05D004240 6.4e-21 105.9 57 87.7
Medtr7g090350 Medicago truncatula HOM05D002908 ORTHO05D007390 2.1e-16 90.9 249 30.5
Rhsim03G0241200 Rhododendron simsii HOM05D002908 ORTHO05D050692 2.4e-15 87.4 45 88.9
Lsat_1_v5_gn_3_20480 Lactuca sativa HOM05D001398 ORTHO05D011740 7.1e-12 75.9 78 50.0
Rhsim12G0105800 Rhododendron simsii HOM05D002908 ORTHO05D340239 1.6e-11 74.7 55 67.3
Nitab4.5_0016721g0010 Nicotiana tabacum HOM05D002908 ORTHO05D283189 8.7e-10 68.9 86 58.1
Solyc12g027700.1 Solanum lycopersicum HOM05D002908 ORTHO05D050692 2.8e-08 63.9 30 90.0
Nn3g18125 Nelumbo nucifera HOM05D002908 ORTHO05D007390 4.0e-07 60.1 41 73.2


User provided reference genes

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