Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0009887g0010 Nicotiana tabacum HOM05D003926 ORTHO05D005273 0.0e+00 5996.8 3064 100.0
Nitab4.5_0001339g0050 Nicotiana tabacum HOM05D003926 ORTHO05D005273 0.0e+00 5041.1 3609 76.3
Sopen02g034050 Solanum pennellii HOM05D003926 ORTHO05D005273 0.0e+00 3913.6 2431 83.4
CAN.G497.55 Capsicum annuum HOM05D003926 ORTHO05D005273 0.0e+00 3898.6 2427 83.3
Solyc02g089260.4 Solanum lycopersicum HOM05D003926 ORTHO05D005273 0.0e+00 3896.3 2431 83.1
GSVIVG01036538001 Vitis vinifera HOM05D003926 ORTHO05D005273 0.0e+00 2921.3 4514 41.4
Dinv34905 Davidia involucrata HOM05D003926 ORTHO05D005273 0.0e+00 2888.2 2439 62.0
CSS0002647 Camellia sinensis var. sinensis HOM05D003926 ORTHO05D005273 0.0e+00 2805.8 2436 60.1
CSS0025257 Camellia sinensis var. sinensis HOM05D003926 ORTHO05D005273 0.0e+00 2800.4 2436 60.1
Lj4C124T8 Lonicera japonica HOM05D003926 ORTHO05D005273 0.0e+00 2754.5 2489 59.1
Actinidia18083 Actinidia chinensis HOM05D003926 ORTHO05D005273 0.0e+00 2735.7 2436 58.9
Cc07_g04520 Coffea canephora HOM05D003926 ORTHO05D005273 0.0e+00 2697.2 2440 58.9
Rhsim10G0059600 Rhododendron simsii HOM05D003926 ORTHO05D005273 0.0e+00 2675.6 2429 58.3
Haze_14378 Corylus avellana HOM05D003926 ORTHO05D005273 0.0e+00 2625.9 2423 57.6
vmacro05611 Vaccinium macrocarpon HOM05D003926 ORTHO05D005273 0.0e+00 2620.1 2559 54.9
MSTRG.23855 Avicennia marina HOM05D003926 ORTHO05D005273 0.0e+00 2615.5 2433 57.4
TAR374G0863 Trochodendron aralioides HOM05D003926 ORTHO05D005273 0.0e+00 2601.6 2437 56.6
Cfa007698 Carpinus fangiana HOM05D003926 ORTHO05D005273 0.0e+00 2597.4 2420 57.2
QL02p065183 Quercus lobata HOM05D003926 ORTHO05D005273 0.0e+00 2588.9 2476 56.3
Prupe.3G248400 Prunus persica HOM05D003926 ORTHO05D005273 0.0e+00 2580.1 2417 56.8
Migut.H00584 Erythranthe guttata HOM05D003926 ORTHO05D005273 0.0e+00 2575.8 2443 56.1
Atru.chr8.620 Acer truncatum HOM05D003926 ORTHO05D005273 0.0e+00 2558.9 2423 56.3
CiPaw.03G082600 Carya illinoinensis HOM05D003926 ORTHO05D005273 0.0e+00 2553.1 2317 57.9
DCAR_011007 Daucus carota HOM05D003926 ORTHO05D005273 0.0e+00 2546.2 2439 55.5
MD09G1075600 Malus domestica HOM05D003926 ORTHO05D005273 0.0e+00 2543.8 2418 56.0
ECA232G4780 Erigeron canadensis HOM05D003926 ORTHO05D005273 0.0e+00 2540.0 2422 55.9
MD17G1066300 Malus domestica HOM05D003926 ORTHO05D005273 0.0e+00 2528.1 2419 56.1
HanXRQChr15g0464821 Helianthus annuus HOM05D003926 ORTHO05D005273 0.0e+00 2526.5 2437 55.5
RcHm_v2.0_Chr2g0164791 Rosa chinensis HOM05D003926 ORTHO05D005273 0.0e+00 2516.1 2440 55.7
Thecc.04G107500 Theobroma cacao HOM05D003926 ORTHO05D005273 0.0e+00 2509.6 2416 55.6
Ciclev10010885m.g Citrus clementina HOM05D003926 ORTHO05D005273 0.0e+00 2506.5 2433 55.4
CANSAT64G0948 Cannabis sativa HOM05D003926 ORTHO05D005273 0.0e+00 2490.7 2442 55.0
Potri.017G101100 Populus trichocarpa HOM05D003926 ORTHO05D005273 0.0e+00 2485.7 2431 55.6
Manes.02G059900 Manihot esculenta HOM05D003926 ORTHO05D005273 0.0e+00 2479.5 2436 54.6
TAR622G1093 Trochodendron aralioides HOM05D003926 ORTHO05D005273 0.0e+00 2474.5 2316 56.0
SGA_v2.0_scaffold52G19072 Striga asiatica HOM05D003926 ORTHO05D005273 0.0e+00 2471.8 2442 54.3
FvH4_6g46320 Fragaria vesca HOM05D003926 ORTHO05D005273 0.0e+00 2467.2 2438 54.6
Sabra17G0086900 Salix brachista HOM05D003926 ORTHO05D005273 0.0e+00 2462.6 2432 55.1
Glyma.08G252600 Glycine max HOM05D003926 ORTHO05D005273 0.0e+00 2462.2 2438 54.1
Lsat_1_v5_gn_4_173381 Lactuca sativa HOM05D003926 ORTHO05D005273 0.0e+00 2459.5 2445 55.6
Gorai.001G206500 Gossypium raimondii HOM05D003926 ORTHO05D005273 0.0e+00 2458.3 2415 54.6
Gohir.A07G179100 Gossypium hirsutum HOM05D003926 ORTHO05D005273 0.0e+00 2442.9 2415 54.3
Duzib133G0169 Durio zibethinus HOM05D003926 ORTHO05D005273 0.0e+00 2434.4 2418 54.9
Nn3g17538 Nelumbo nucifera HOM05D003926 ORTHO05D005273 0.0e+00 2429.4 2443 53.4
Lj1g0024205 Lotus japonicus HOM05D003926 ORTHO05D005273 0.0e+00 2415.6 2441 53.8
arahy.Tifrunner.gnm1.ann1.FDTJ9Q Arachis hypogaea HOM05D003926 ORTHO05D005273 0.0e+00 2411.7 2433 53.6
arahy.Tifrunner.gnm1.ann1.IQIT5J Arachis hypogaea HOM05D003926 ORTHO05D005273 0.0e+00 2407.9 2418 53.8
TPR.G23405 Trifolium pratense HOM05D003926 ORTHO05D005273 0.0e+00 2405.2 2421 53.3
Phvul.008G025700 Phaseolus vulgaris HOM05D003926 ORTHO05D005273 0.0e+00 2399.0 2441 52.9
Glyma.18G275200 Glycine max HOM05D003926 ORTHO05D005273 0.0e+00 2396.3 2440 52.8
Medtr7g017100 Medicago truncatula HOM05D003926 ORTHO05D005273 0.0e+00 2392.8 2436 52.9
Ca_06914_v3 Cicer arietinum L. HOM05D003926 ORTHO05D005273 0.0e+00 2384.8 2433 53.0
Ca_06916_v3 Cicer arietinum L. HOM05D003926 ORTHO05D005273 0.0e+00 2384.8 2433 53.0
TWI32G0285 Tripterygium wilfordii HOM05D003926 ORTHO05D005273 0.0e+00 2384.8 2446 53.7
Psat3g203080 Pisum sativum HOM05D003926 ORTHO05D005273 0.0e+00 2384.4 2432 52.8
MBI15_g05000_MAGBIO Magnolia biondii HOM05D003926 ORTHO05D005273 0.0e+00 2376.3 2424 52.8
Dinv33869 Davidia involucrata HOM05D003926 ORTHO05D005273 0.0e+00 2367.4 2433 53.9
Aqoxy3G03752 Aquilegia oxysepala HOM05D003926 ORTHO05D005273 0.0e+00 2360.1 2429 52.2
MELO3C022053.2 Cucumis melo HOM05D003926 ORTHO05D005273 0.0e+00 2357.0 2437 52.2
Peaxi162Scf00020g02342 Petunia axillaris HOM05D003926 ORTHO05D005273 0.0e+00 2356.6 1379 87.9
PGR004G0818 Punica granatum HOM05D003926 ORTHO05D005273 0.0e+00 2354.3 2433 51.9
PSO063G5950 Papaver somniferum HOM05D003926 ORTHO05D005273 0.0e+00 2353.2 2439 52.0
PSO782G5674 Papaver somniferum HOM05D003926 ORTHO05D005273 0.0e+00 2349.3 2439 51.9
AUR62009475 Chenopodium quinoa HOM05D003926 ORTHO05D005273 0.0e+00 2345.9 2434 52.9
ClCG11G004990 Citrullus lanatus HOM05D003926 ORTHO05D005273 0.0e+00 2342.0 2473 51.5
Hund16238 Selenicereus undatus HOM05D003926 ORTHO05D005273 0.0e+00 2341.6 2432 52.5
CsaV3_5G038720 Cucumis sativus L. HOM05D003926 ORTHO05D005273 0.0e+00 2331.2 2427 51.9
AUR62023153 Chenopodium quinoa HOM05D003926 ORTHO05D005273 0.0e+00 2315.8 2458 52.3
Lalb_Chr21g0318281 Lupinus albus HOM05D003926 ORTHO05D005273 0.0e+00 2295.8 2442 51.4
Sc14g0004890 Simmondsia chinensis HOM05D003926 ORTHO05D005273 0.0e+00 2291.5 2451 52.1
EL10Ac2g04434 Beta vulgaris HOM05D003926 ORTHO05D005273 0.0e+00 2282.7 2443 52.3
Duzib211G0130 Durio zibethinus HOM05D003926 ORTHO05D005273 0.0e+00 2280.4 2416 51.9
Sed0020046 Sechium edule HOM05D003926 ORTHO05D005273 0.0e+00 2266.5 2425 51.2
Ah.16g101010 Amaranthus hybridus HOM05D003926 ORTHO05D005273 0.0e+00 2205.6 2432 50.9
Thhalv10019869m.g Eutrema salsugineum HOM05D003926 ORTHO05D005273 0.0e+00 2164.0 2415 49.5
Sp3g01330 Schrenkiella parvula HOM05D003926 ORTHO05D005273 0.0e+00 2157.5 2414 49.0
Aa31LG5G12790 Aethionema arabicum HOM05D003926 ORTHO05D005273 0.0e+00 2154.4 2418 49.2
THA.LOC104802985 Tarenaya hassleriana HOM05D003926 ORTHO05D005273 0.0e+00 2149.4 2454 49.1
AL3G11530 Arabidopsis lyrata HOM05D003926 ORTHO05D005273 0.0e+00 2143.2 2411 49.2
AT3G02260 Arabidopsis thaliana HOM05D003926 ORTHO05D005273 0.0e+00 2139.0 2416 49.1
CARHR076230 Cardamine hirsuta HOM05D003926 ORTHO05D005273 0.0e+00 2122.4 2415 48.7
ATR0691G267 Amborella trichopoda HOM05D003926 ORTHO05D005273 0.0e+00 2116.3 2448 48.0
A05p45150 Brassica napus HOM05D003926 ORTHO05D005273 0.0e+00 2114.7 2417 48.6
C09p75640 Brassica napus HOM05D003926 ORTHO05D005273 0.0e+00 2112.8 2417 48.7
BolC5t35094H Brassica oleracea HOM05D003926 ORTHO05D005273 0.0e+00 2110.9 2419 48.8
BraA05t23147Z Brassica rapa HOM05D003926 ORTHO05D005273 0.0e+00 2096.2 2439 48.2
ATR1101G059 Amborella trichopoda HOM05D003926 ORTHO05D005273 0.0e+00 2093.2 2446 47.7
Lalb_Chr06g0174881 Lupinus albus HOM05D003926 ORTHO05D005273 0.0e+00 2043.9 2442 48.0
Carub.0003s0138 Capsella rubella HOM05D003926 ORTHO05D005273 0.0e+00 2030.8 2232 50.3
BcaC05g30341 Brassica carinata HOM05D003926 ORTHO05D005273 0.0e+00 1903.6 2354 46.9
arahy.Tifrunner.gnm1.ann1.DT5ZWB Arachis hypogaea HOM05D003926 ORTHO05D005273 0.0e+00 1866.7 2067 50.1
COL.COLO4_10659 Corchorus olitorius HOM05D003926 ORTHO05D005273 0.0e+00 1859.0 1474 65.5
Os09g0247700 Oryza sativa ssp. japonica HOM05D003926 ORTHO05D005273 0.0e+00 1839.3 2372 43.9
SEGI_07483 Sequoiadendron giganteum HOM05D003926 ORTHO05D005273 0.0e+00 1744.2 2468 42.1
Zm00001eb308350 Zea mays HOM05D003926 ORTHO05D005273 0.0e+00 1699.5 2392 42.4
HPP92_020588 Vanilla planifolia HOM05D003926 ORTHO05D005273 0.0e+00 1649.8 2362 41.2
SHI25820 Sapria himalayana HOM05D003926 ORTHO05D005273 0.0e+00 1643.6 2258 42.9
Gohir.A07G178901 Gossypium hirsutum HOM05D003926 ORTHO05D005273 0.0e+00 1595.1 1915 46.5
CDE01G0304 Ceratophyllum demersum HOM05D003926 ORTHO05D005273 0.0e+00 1558.9 1769 49.0
Rhsim05G0129500 Rhododendron simsii HOM05D003926 ORTHO05D005273 0.0e+00 1325.8 1511 49.8
Mapoly0031s0115 Marchantia polymorpha HOM05D003926 ORTHO05D005273 0.0e+00 1319.3 2542 35.5
AagrBONN_evm.TU.Sc2ySwM_344.3761 Anthoceros agrestis HOM05D003926 ORTHO05D005273 0.0e+00 1285.8 2534 36.0
Pp3c11_22340 Physcomitrium patens HOM05D003926 ORTHO05D005273 0.0e+00 1250.7 2555 35.5
Peaxi162Scf00020g02344 Petunia axillaris HOM05D003926 ORTHO05D005273 0.0e+00 1240.3 889 73.8
Pp3c7_7030 Physcomitrium patens HOM05D003926 ORTHO05D005273 0.0e+00 1199.9 2562 34.3
SMO361G0659 Selaginella moellendorffii HOM05D003926 ORTHO05D005273 0.0e+00 1128.6 2127 35.9
Gohir.D07G186000 Gossypium hirsutum HOM05D003926 ORTHO05D005273 0.0e+00 1087.0 1055 59.6
Gohir.A07G178700 Gossypium hirsutum HOM05D003926 ORTHO05D005273 0.0e+00 1084.7 1049 59.8
vmacro05610 Vaccinium macrocarpon HOM05D003926 ORTHO05D005273 0.0e+00 1077.8 983 61.9
Lj1g0000156 Lotus japonicus HOM05D003926 ORTHO05D005273 0.0e+00 1076.6 1043 59.1
Glyma.08G252650 Glycine max HOM05D003926 ORTHO05D005273 2.1e-311 1074.7 1022 59.9
Eucgr.I02068 Eucalyptus grandis HOM05D003926 ORTHO05D005273 8.4e-303 1045.4 1026 58.3
Cpa.g.sc14.238 Carica papaya HOM05D003926 ORTHO05D005273 3.3e-299 1033.5 1020 58.8
BcaC05g30340 Brassica carinata HOM05D003926 ORTHO05D005273 2.9e-295 1020.4 1003 57.5
A05p45140 Brassica napus HOM05D003926 ORTHO05D005273 1.4e-294 1018.1 1024 56.4
FAN09G1503 Fragaria x ananassa HOM05D003926 ORTHO05D005273 3.1e-281 973.8 1432 39.8
HPP92_020589 Vanilla planifolia HOM05D003926 ORTHO05D005273 1.0e-268 932.2 1019 53.3
Dinv33870 Davidia involucrata HOM05D003926 ORTHO05D005273 3.1e-265 920.6 928 58.1
SHI25822 Sapria himalayana HOM05D003926 ORTHO05D005273 4.5e-256 890.2 1018 51.2
Atru.chr12.1304 Acer truncatum HOM05D003926 ORTHO05D005273 1.4e-225 788.9 695 62.9
CDE01G0480 Ceratophyllum demersum HOM05D003926 ORTHO05D005273 7.1e-209 733.4 727 56.8
CBR_g24086 Chara braunii HOM05D003926 ORTHO05D000048 1.6e-192 679.1 1049 41.8
SMO361G0392 Selaginella moellendorffii HOM05D003926 ORTHO05D005273 6.0e-184 650.6 1023 41.7
SMO199G0087 Selaginella moellendorffii HOM05D003926 ORTHO05D005273 4.5e-171 607.8 1022 40.4
Sabra16G0314500 Salix brachista HOM05D004145 ORTHO05D004879 5.6e-129 468.0 422 63.0
PGSC0003DMG401001381 Solanum tuberosum HOM05D003926 ORTHO05D005273 4.4e-102 378.6 212 94.3
Actinidia36271 Actinidia chinensis HOM05D003926 ORTHO05D005273 4.6e-91 342.0 216 78.2
Migut.H00583 Erythranthe guttata HOM05D003926 ORTHO05D005273 1.7e-90 340.1 203 79.8
MCO11G572 Micromonas commoda HOM05D003926 ORTHO05D005273 2.5e-89 336.3 966 28.1
Rhsim05G0129300 Rhododendron simsii HOM05D003926 ORTHO05D005273 7.6e-78 298.1 216 71.8
Sabra16G0314400 Salix brachista HOM05D004145 ORTHO05D004879 1.1e-68 267.7 365 47.4
Oeu047260.2 Olea europaea HOM05D003926 ORTHO05D005273 8.2e-56 224.9 147 80.3
Psat4g170760 Pisum sativum HOM05D003926 ORTHO05D005273 9.1e-39 168.3 108 75.9
CDE01G0511 Ceratophyllum demersum HOM05D003926 ORTHO05D005273 4.5e-38 166.0 363 32.0
Rhsim10G0100000 Rhododendron simsii HOM05D003926 ORTHO05D005273 5.2e-34 152.5 133 63.2
CAN.G8.6 Capsicum annuum HOM05D003926 ORTHO05D010611 1.1e-31 144.8 175 49.7
ATR0620G072 Amborella trichopoda HOM05D003059 ORTHO05D003414 1.7e-29 137.5 106 72.6
A05p29520 Brassica napus HOM05D003926 ORTHO05D005273 2.5e-28 133.7 341 31.4
ATR0332G115 Amborella trichopoda HOM05D003926 ORTHO05D005273 2.3e-26 127.1 115 67.8
A05p29570 Brassica napus HOM05D003926 ORTHO05D010327 7.7e-22 112.1 323 29.1
Eucgr.I02066 Eucalyptus grandis HOM05D003926 ORTHO05D018213 1.6e-19 104.4 123 48.8
BcaC05g29898 Brassica carinata HOM05D003926 ORTHO05D005273 8.0e-19 102.1 120 52.5
Actinidia36270 Actinidia chinensis HOM05D003926 ORTHO05D038129 6.3e-16 92.4 283 29.7
VMungo1383G2275 Vigna mungo HOM05D003926 ORTHO05D005273 1.1e-15 91.7 110 50.0
Cpa.g.sc3603.1 Carica papaya HOM05D003926 ORTHO05D018213 9.2e-15 88.6 104 46.2
Actinidia14026 Actinidia chinensis HOM05D003926 ORTHO05D018213 5.9e-14 85.9 120 45.8
CDE01G0142 Ceratophyllum demersum HOM05D003926 ORTHO05D018213 5.0e-13 82.8 139 38.8
Sp7g04320 Schrenkiella parvula HOM05D003926 ORTHO05D005273 9.5e-12 78.6 79 45.6
Dinv36991 Davidia involucrata HOM05D003926 ORTHO05D038129 1.2e-11 78.2 56 66.1
QL10p058201 Quercus lobata HOM05D001813 ORTHO05D008124 3.6e-11 76.6 108 44.4
Nn1g06304 Nelumbo nucifera HOM05D003926 ORTHO05D018213 4.7e-11 76.3 121 41.3
Psat3g160120 Pisum sativum HOM05D003926 ORTHO05D005273 2.3e-10 73.9 60 55.0
Psat4g018040 Pisum sativum HOM05D003926 ORTHO05D005273 1.5e-09 71.2 113 39.8
COL.COLO4_10661 Corchorus olitorius HOM05D003926 ORTHO05D018213 2.4e-07 63.9 105 38.1
A10p01720 Brassica napus HOM05D003926 ORTHO05D005273 7.8e-06 58.9 34 79.4


User provided reference genes

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