Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0009807g0010 Nicotiana tabacum HOM05D004668 ORTHO05D006460 2.2e-304 1048.1 518 100.0
Solyc08g068340.3 Solanum lycopersicum HOM05D004668 ORTHO05D006460 3.1e-290 1001.1 518 94.4
Sopen08g022190 Solanum pennellii HOM05D004668 ORTHO05D006460 3.1e-290 1001.1 518 94.4
PGSC0003DMG400010841 Solanum tuberosum HOM05D004668 ORTHO05D006460 6.9e-290 1000.0 518 94.2
Peaxi162Scf00523g00013 Petunia axillaris HOM05D004668 ORTHO05D006460 4.4e-289 997.3 554 90.6
Cc08_g09100 Coffea canephora HOM05D004668 ORTHO05D006460 6.2e-283 976.9 519 91.3
Manes.16G069151 Manihot esculenta HOM05D004668 ORTHO05D006460 1.4e-279 965.7 527 89.9
Rhsim07G0153100 Rhododendron simsii HOM05D004668 ORTHO05D006460 2.4e-279 964.9 520 90.6
QL12p029595 Quercus lobata HOM05D004668 ORTHO05D006460 4.2e-279 964.1 501 92.8
Dinv30261 Davidia involucrata HOM05D004668 ORTHO05D006460 2.1e-278 961.8 518 90.5
DCAR_007707 Daucus carota HOM05D004668 ORTHO05D006460 2.7e-278 961.4 517 89.9
Potri.006G241300 Populus trichocarpa HOM05D004668 ORTHO05D006460 2.7e-278 961.4 520 89.8
CSS0043453 Camellia sinensis var. sinensis HOM05D004668 ORTHO05D006460 3.5e-278 961.1 518 90.2
Lj8A596T25 Lonicera japonica HOM05D004668 ORTHO05D006460 1.8e-277 958.7 519 89.4
Cfa013349 Carpinus fangiana HOM05D004668 ORTHO05D006460 3.0e-277 958.0 526 89.2
CiPaw.07G206300 Carya illinoinensis HOM05D004668 ORTHO05D006460 6.7e-277 956.8 523 89.1
Eucgr.C02897 Eucalyptus grandis HOM05D004668 ORTHO05D006460 6.7e-277 956.8 532 87.4
Glyma.06G082500 Glycine max HOM05D004668 ORTHO05D006460 1.5e-276 955.7 516 89.7
CSS0016357 Camellia sinensis var. sinensis HOM05D004668 ORTHO05D006460 1.9e-276 955.3 519 89.4
Ciclev10007989m.g Citrus clementina HOM05D004668 ORTHO05D006460 2.8e-275 951.4 525 88.2
COL.COLO4_18686 Corchorus olitorius HOM05D004668 ORTHO05D006460 2.8e-275 951.4 521 89.3
VMungo1309G0977 Vigna mungo HOM05D004668 ORTHO05D006460 2.8e-275 951.4 516 89.5
Glyma.04G080800 Glycine max HOM05D004668 ORTHO05D006460 3.7e-275 951.0 516 89.5
TAR626G0558 Trochodendron aralioides HOM05D004668 ORTHO05D006460 4.8e-275 950.7 525 88.4
Thecc.09G041000 Theobroma cacao HOM05D004668 ORTHO05D006460 8.1e-275 949.9 521 89.1
Phvul.009G106900 Phaseolus vulgaris HOM05D004668 ORTHO05D006460 1.4e-274 949.1 516 89.3
Prupe.1G451600 Prunus persica HOM05D004668 ORTHO05D006460 1.4e-274 949.1 531 87.6
Lj1g0002470 Lotus japonicus HOM05D004668 ORTHO05D006460 1.8e-274 948.7 516 89.0
TAR383G0581 Trochodendron aralioides HOM05D004668 ORTHO05D006460 1.8e-274 948.7 526 88.0
Atru.chr7.2149 Acer truncatum HOM05D004668 ORTHO05D006460 5.3e-274 947.2 516 88.8
Nn3g18078 Nelumbo nucifera HOM05D004668 ORTHO05D006460 5.3e-274 947.2 526 87.6
Migut.A00230 Erythranthe guttata HOM05D004668 ORTHO05D006460 9.0e-274 946.4 515 89.5
Duzib150G0487 Durio zibethinus HOM05D004668 ORTHO05D006460 1.2e-273 946.0 521 88.9
Gohir.A06G095600 Gossypium hirsutum HOM05D004668 ORTHO05D006460 1.5e-273 945.7 521 88.7
Actinidia13314 Actinidia chinensis HOM05D004668 ORTHO05D006460 4.5e-273 944.1 518 88.4
MD15G1096700 Malus domestica HOM05D004668 ORTHO05D006460 4.5e-273 944.1 530 86.6
Gorai.010G110200 Gossypium raimondii HOM05D004668 ORTHO05D006460 5.8e-273 943.7 521 88.5
MD08G1117100 Malus domestica HOM05D004668 ORTHO05D006460 5.8e-273 943.7 530 86.6
Gohir.A05G047900 Gossypium hirsutum HOM05D004668 ORTHO05D006460 7.6e-273 943.3 521 88.3
Gorai.009G051100 Gossypium raimondii HOM05D004668 ORTHO05D006460 1.3e-272 942.6 521 88.3
PGR044G2637 Punica granatum HOM05D004668 ORTHO05D006460 1.3e-272 942.6 525 87.6
CANSAT25G3625 Cannabis sativa HOM05D004668 ORTHO05D006460 2.2e-272 941.8 521 88.1
Gohir.D06G095700 Gossypium hirsutum HOM05D004668 ORTHO05D006460 2.2e-272 941.8 521 88.5
MSTRG.1654 Avicennia marina HOM05D004668 ORTHO05D006460 3.8e-272 941.0 517 88.2
arahy.Tifrunner.gnm1.ann1.1GG9S8 Arachis hypogaea HOM05D004668 ORTHO05D006460 4.9e-272 940.6 524 87.6
arahy.Tifrunner.gnm1.ann1.ID3432 Arachis hypogaea HOM05D004668 ORTHO05D006460 4.9e-272 940.6 524 87.6
Hund03417 Selenicereus undatus HOM05D004668 ORTHO05D006460 1.4e-271 939.1 526 86.5
Haze_21865 Corylus avellana HOM05D004668 ORTHO05D006460 4.2e-271 937.6 565 83.0
Gohir.D05G049800 Gossypium hirsutum HOM05D004668 ORTHO05D006460 5.5e-271 937.2 521 87.9
Thhalv10003996m.g Eutrema salsugineum HOM05D004668 ORTHO05D006460 2.7e-270 934.9 524 86.5
Potri.018G038500 Populus trichocarpa HOM05D004668 ORTHO05D006460 3.5e-270 934.5 520 87.1
Thhalv10004012m.g Eutrema salsugineum HOM05D004668 ORTHO05D006460 6.0e-270 933.7 518 87.3
BcaNung04843 Brassica carinata HOM05D004668 ORTHO05D006460 7.9e-270 933.3 524 86.6
TWI63G0192 Tripterygium wilfordii HOM05D004668 ORTHO05D006460 1.0e-269 932.9 518 88.2
EL10Ac2g04059 Beta vulgaris HOM05D004668 ORTHO05D006460 1.8e-269 932.2 518 86.3
SalBow8G2719 Salvia bowleyana HOM05D004668 ORTHO05D006460 1.8e-269 932.2 518 87.1
AUR62009316 Chenopodium quinoa HOM05D004668 ORTHO05D006460 3.9e-269 931.0 522 85.6
Ca_15614_v3 Cicer arietinum L. HOM05D004668 ORTHO05D006460 2.5e-268 928.3 504 89.3
Lsat_1_v5_gn_5_33301 Lactuca sativa HOM05D004668 ORTHO05D006460 4.3e-268 927.5 517 87.0
THA.LOC104799201 Tarenaya hassleriana HOM05D004668 ORTHO05D006460 5.7e-268 927.2 530 85.1
Lalb_Chr11g0064411 Lupinus albus HOM05D004668 ORTHO05D006460 7.4e-268 926.8 523 85.7
Sc24g0002000 Simmondsia chinensis HOM05D004668 ORTHO05D006460 9.6e-268 926.4 499 88.6
A06p36360 Brassica napus HOM05D004668 ORTHO05D006460 1.3e-267 926.0 524 85.9
BraA06t26560Z Brassica rapa HOM05D004668 ORTHO05D006460 1.3e-267 926.0 524 85.9
BcaNung03928 Brassica carinata HOM05D004668 ORTHO05D006460 1.6e-267 925.6 524 86.1
C07p42150 Brassica napus HOM05D004668 ORTHO05D006460 1.6e-267 925.6 524 86.1
Medtr3g110068 Medicago truncatula HOM05D004668 ORTHO05D006460 1.6e-267 925.6 504 88.7
Aa31LG11G4750 Aethionema arabicum HOM05D004668 ORTHO05D006460 4.8e-267 924.1 527 85.4
BolC7t44746H Brassica oleracea HOM05D004668 ORTHO05D006460 4.8e-267 924.1 524 85.9
FAN20G1164 Fragaria x ananassa HOM05D004668 ORTHO05D006460 4.8e-267 924.1 523 86.4
MBI01_g15706_MAGBIO Magnolia biondii HOM05D004668 ORTHO05D006460 4.8e-267 924.1 524 84.9
Carub.0006s2352 Capsella rubella HOM05D004668 ORTHO05D006460 8.2e-267 923.3 522 85.1
FAN15G0799 Fragaria x ananassa HOM05D004668 ORTHO05D006460 8.2e-267 923.3 523 85.9
Lalb_Chr08g0243231 Lupinus albus HOM05D004668 ORTHO05D006460 1.1e-266 922.9 527 85.0
MELO3C003453.2 Cucumis melo HOM05D004668 ORTHO05D006460 1.4e-266 922.5 528 86.0
Sabra18G0038900 Salix brachista HOM05D004668 ORTHO05D006460 1.4e-266 922.5 529 85.3
TWI23G1109 Tripterygium wilfordii HOM05D004668 ORTHO05D006460 1.8e-266 922.2 520 86.0
BcaB04g19770 Brassica carinata HOM05D004668 ORTHO05D006460 2.4e-266 921.8 521 85.8
ClCG11G015260 Citrullus lanatus HOM05D004668 ORTHO05D006460 4.1e-266 921.0 528 85.8
CsaV3_3G048680 Cucumis sativus L. HOM05D004668 ORTHO05D006460 4.1e-266 921.0 528 85.8
Sed0007190 Sechium edule HOM05D004668 ORTHO05D006460 3.4e-265 917.9 528 85.6
Nn2g11692 Nelumbo nucifera HOM05D004668 ORTHO05D006460 5.9e-265 917.1 525 84.8
Carub.0006s2353 Capsella rubella HOM05D004668 ORTHO05D006460 7.6e-265 916.8 522 84.3
AUR62029669 Chenopodium quinoa HOM05D004668 ORTHO05D006460 1.3e-264 916.0 546 81.9
FAN27G2976 Fragaria x ananassa HOM05D004668 ORTHO05D006460 2.9e-264 914.8 523 85.7
HanXRQChr08g0236271 Helianthus annuus HOM05D004668 ORTHO05D006460 3.8e-264 914.4 514 86.4
Sed0009143 Sechium edule HOM05D004668 ORTHO05D006460 6.5e-264 913.7 528 84.5
RcHm_v2.0_Chr6g0305871 Rosa chinensis HOM05D004668 ORTHO05D006460 8.4e-264 913.3 525 85.7
PSO782G3981 Papaver somniferum HOM05D004668 ORTHO05D006460 1.1e-263 912.9 522 85.2
FvH4_2g36000 Fragaria vesca HOM05D004668 ORTHO05D006460 1.4e-263 912.5 491 89.8
Aqoxy7G01598 Aquilegia oxysepala HOM05D004668 ORTHO05D006460 2.5e-263 911.8 532 84.2
Psat5g022480 Pisum sativum HOM05D004668 ORTHO05D006460 4.2e-263 911.0 499 87.4
TPR.G1330 Trifolium pratense HOM05D004668 ORTHO05D006460 9.3e-263 909.8 504 86.7
PSO566G0146 Papaver somniferum HOM05D004668 ORTHO05D006460 2.7e-262 908.3 522 84.5
SGA_v2.0_scaffold169G38650 Striga asiatica HOM05D004668 ORTHO05D006460 1.3e-261 906.0 529 83.9
Lalb_Chr23g0269511 Lupinus albus HOM05D004668 ORTHO05D006460 2.3e-261 905.2 510 84.5
AL3G41810 Arabidopsis lyrata HOM05D004668 ORTHO05D006460 3.9e-261 904.4 516 84.1
AL6G37550 Arabidopsis lyrata HOM05D004668 ORTHO05D006460 1.1e-260 902.9 522 83.0
AT5G25754 Arabidopsis thaliana HOM05D004668 ORTHO05D006460 4.8e-259 897.5 519 83.8
AT5G25757 Arabidopsis thaliana HOM05D004668 ORTHO05D006460 4.8e-259 897.5 519 83.8
CDE02G2035 Ceratophyllum demersum HOM05D004668 ORTHO05D006460 1.2e-257 892.9 511 83.8
ECA246G0301 Erigeron canadensis HOM05D004668 ORTHO05D006460 1.2e-257 892.9 521 84.5
CDE04G3150 Ceratophyllum demersum HOM05D004668 ORTHO05D006460 2.6e-257 891.7 515 81.9
ATR0315G076 Amborella trichopoda HOM05D004668 ORTHO05D006460 8.2e-251 870.2 498 81.5
SGA_v2.0_scaffold163G38083 Striga asiatica HOM05D004668 ORTHO05D006460 3.1e-250 868.2 519 82.7
HPP92_023911 Vanilla planifolia HOM05D004668 ORTHO05D006460 9.1e-250 866.7 528 78.6
unitig_748.g7800 Utricularia gibba HOM05D004668 ORTHO05D006460 2.3e-245 852.0 518 79.9
HPP92_023943 Vanilla planifolia HOM05D004668 ORTHO05D006460 1.4e-242 842.8 528 77.1
SHI18650 Sapria himalayana HOM05D004668 ORTHO05D006460 7.7e-241 837.0 564 74.3
Zm00001eb119330 Zea mays HOM05D004668 ORTHO05D006460 1.2e-233 813.1 521 74.7
Zm00001eb339230 Zea mays HOM05D004668 ORTHO05D006460 2.9e-232 808.5 521 74.9
Os05g0227700 Oryza sativa ssp. japonica HOM05D004668 ORTHO05D006460 2.7e-230 802.0 501 75.8
Actinidia31228 Actinidia chinensis HOM05D004668 ORTHO05D006460 5.2e-229 797.7 473 84.1
Mapoly0007s0280 Marchantia polymorpha HOM05D004668 ORTHO05D006460 6.3e-227 790.8 514 71.8
Os01g0229100 Oryza sativa ssp. japonica HOM05D004668 ORTHO05D006460 6.3e-227 790.8 508 72.6
Pp3s48_70 Physcomitrium patens HOM05D004668 ORTHO05D006460 7.7e-225 783.9 514 71.4
Pp3c21_22430 Physcomitrium patens HOM05D004668 ORTHO05D006460 3.2e-223 778.5 514 70.8
Mapoly0008s0020 Marchantia polymorpha HOM05D004668 ORTHO05D006460 5.7e-220 767.7 514 69.6
Sp2g21880 Schrenkiella parvula HOM05D004668 ORTHO05D006460 1.8e-218 762.7 524 75.2
SEGI_23309 Sequoiadendron giganteum HOM05D004668 ORTHO05D006460 3.1e-218 761.9 518 71.4
Sp2g21870 Schrenkiella parvula HOM05D004668 ORTHO05D006460 2.9e-216 755.4 525 74.1
CARHR289290 Cardamine hirsuta HOM05D004668 ORTHO05D006460 3.6e-214 748.4 412 87.4
Sabra06G0188700 Salix brachista HOM05D004668 ORTHO05D006460 8.9e-213 743.8 520 74.2
AUR62043617 Chenopodium quinoa HOM05D004668 ORTHO05D006460 4.3e-207 724.9 522 71.5
CBR_g38842 Chara braunii HOM05D004668 ORTHO05D006460 4.4e-204 714.9 491 68.2
GSVIVG01035660001 Vitis vinifera HOM05D004668 ORTHO05D006460 5.2e-197 691.4 379 89.4
SMO118G0091 Selaginella moellendorffii HOM05D004668 ORTHO05D006460 3.2e-194 682.2 537 62.4
AagrBONN_evm.TU.Sc2ySwM_344.1641 Anthoceros agrestis HOM05D004668 ORTHO05D006460 4.0e-189 665.2 504 65.3
Duzib187G0091 Durio zibethinus HOM05D004668 ORTHO05D006460 1.0e-184 650.6 419 79.5
Cpa.g.sc78.74 Carica papaya HOM05D004668 ORTHO05D006460 2.5e-183 646.0 346 92.5
Hma1.2p1_0140F.1_g063460 Hydrangea macrophylla HOM05D004668 ORTHO05D006460 4.9e-179 631.7 344 89.8
Oeu012190.1 Olea europaea HOM05D004668 ORTHO05D006460 5.6e-167 591.7 522 59.8
CAN.G21.33 Capsicum annuum HOM05D004668 ORTHO05D006460 4.5e-164 582.0 287 97.2
BcaC03g17894 Brassica carinata HOM05D004668 ORTHO05D006460 5.3e-157 558.5 355 78.6
vmacro05363 Vaccinium macrocarpon HOM05D004668 ORTHO05D006460 4.2e-154 548.9 294 88.1
PRCOL_00004532 Prasinoderma coloniale HOM05D004668 ORTHO05D006460 1.1e-151 540.8 491 52.7
Dinv14234 Davidia involucrata HOM05D004668 ORTHO05D006460 1.6e-142 510.4 275 92.7
AL6G38760 Arabidopsis lyrata HOM05D004668 ORTHO05D006460 1.7e-139 500.4 356 72.5
MCO02G037 Micromonas commoda HOM05D004668 ORTHO05D006460 6.5e-139 498.4 510 51.8
Cre17.g697450 Chlamydomonas reinhardtii HOM05D004668 ORTHO05D006460 1.4e-128 464.2 502 49.4
C02p59370 Brassica napus HOM05D004668 ORTHO05D006460 2.0e-124 450.3 285 80.0
Dinv14235 Davidia involucrata HOM05D004668 ORTHO05D024316 7.3e-98 362.1 191 89.0
Cfa026236 Carpinus fangiana HOM05D004668 ORTHO05D123177 4.0e-80 303.1 409 39.6
HanXRQChr06g0165701 Helianthus annuus HOM05D004668 ORTHO05D220881 4.0e-64 250.0 325 45.8
HanXRQChr06g0165631 Helianthus annuus HOM05D004668 ORTHO05D220789 1.2e-63 248.4 413 40.7
CARHR187670 Cardamine hirsuta HOM05D004668 ORTHO05D024316 9.0e-48 195.7 120 76.7
BolC2t12000H Brassica oleracea HOM05D004668 ORTHO05D006460 1.2e-39 168.7 93 87.1
Nitab4.5_0000052g0210 Nicotiana tabacum HOM05D004668 ORTHO05D044669 5.5e-37 159.8 79 100.0
CARHR187660 Cardamine hirsuta HOM05D004668 ORTHO05D024316 5.9e-31 139.8 93 72.0
Cc08_g09150 Coffea canephora HOM05D004668 ORTHO05D044669 4.3e-26 123.6 68 82.4
BcaC03g17896 Brassica carinata HOM05D004668 ORTHO05D024316 8.8e-19 99.4 80 63.8
SGA_v2.0_scaffold47G17509 Striga asiatica HOM05D004668 ORTHO05D405290 1.4e-16 92.0 72 65.3
Medtr3g109300 Medicago truncatula HOM05D000944 ORTHO05D003581 8.5e-14 82.8 125 43.2
RcHm_v2.0_Chr3g0458091 Rosa chinensis HOM05D001034 ORTHO05D000955 7.4e-10 69.7 48 58.3
RcHm_v2.0_Chr6g0279321 Rosa chinensis HOM05D004668 ORTHO05D000955 1.0e-06 59.3 35 68.6


User provided reference genes

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