Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0009681g0010 Nicotiana tabacum HOM05D004189 ORTHO05D004092 0.0e+00 1080.5 670 100.0
Nitab4.5_0000716g0020 Nicotiana tabacum HOM05D004189 ORTHO05D004092 1.7e-232 809.7 603 76.3
PGSC0003DMG400014293 Solanum tuberosum HOM05D004189 ORTHO05D004092 5.0e-176 622.1 723 60.7
Peaxi162Scf00444g00847 Petunia axillaris HOM05D004189 ORTHO05D004092 2.0e-164 583.6 678 59.1
Solyc03g025810.4 Solanum lycopersicum HOM05D004189 ORTHO05D004092 2.3e-157 560.1 726 58.1
Sopen03g004620 Solanum pennellii HOM05D004189 ORTHO05D004092 9.9e-148 528.1 701 59.3
CAN.G490.32 Capsicum annuum HOM05D004189 ORTHO05D004092 4.2e-138 496.1 906 45.7
Cc03_g07610 Coffea canephora HOM05D004189 ORTHO05D004092 8.3e-70 269.2 414 47.8
Oeu024223.1 Olea europaea HOM05D004189 ORTHO05D004092 3.6e-65 253.8 404 44.8
Actinidia34113 Actinidia chinensis HOM05D004189 ORTHO05D004092 1.2e-52 212.2 377 43.0
TAR374G0772 Trochodendron aralioides HOM05D004189 ORTHO05D004092 2.0e-52 211.5 399 40.6
vmacro06681 Vaccinium macrocarpon HOM05D004189 ORTHO05D004092 1.1e-50 205.7 430 39.1
Gorai.008G277500 Gossypium raimondii HOM05D004189 ORTHO05D004092 6.2e-49 199.9 408 39.5
Gohir.A12G257800 Gossypium hirsutum HOM05D004189 ORTHO05D004092 1.1e-48 199.1 402 39.1
Gohir.D12G259100 Gossypium hirsutum HOM05D004189 ORTHO05D004092 1.4e-48 198.7 408 39.2
QL09p014192 Quercus lobata HOM05D004189 ORTHO05D004092 2.0e-47 194.9 366 43.4
TWI23G0464 Tripterygium wilfordii HOM05D004189 ORTHO05D004092 3.4e-47 194.1 396 38.1
QL09p014207 Quercus lobata HOM05D004189 ORTHO05D004092 5.8e-47 193.4 382 41.9
Potri.012G141300 Populus trichocarpa HOM05D004189 ORTHO05D004092 7.5e-47 193.0 392 39.3
COL.COLO4_14310 Corchorus olitorius HOM05D004189 ORTHO05D004092 3.7e-46 190.7 353 40.5
Ciclev10004574m.g Citrus clementina HOM05D004189 ORTHO05D004092 1.1e-45 189.1 440 37.3
Cpa.g.sc107.53 Carica papaya HOM05D004189 ORTHO05D004092 9.2e-45 186.0 395 37.5
Sabra15G0153700 Salix brachista HOM05D004189 ORTHO05D004092 2.7e-44 184.5 364 38.2
CSS0002108 Camellia sinensis var. sinensis HOM05D004189 ORTHO05D004092 1.3e-43 182.2 402 37.3
CSS0007027 Camellia sinensis var. sinensis HOM05D004189 ORTHO05D004092 1.7e-43 181.8 372 38.7
Duzib205G0656 Durio zibethinus HOM05D004189 ORTHO05D004092 1.7e-43 181.8 344 41.3
MD01G1201000 Malus domestica HOM05D004189 ORTHO05D004092 3.0e-43 181.0 436 35.6
Sc19g0001510 Simmondsia chinensis HOM05D004189 ORTHO05D004092 3.9e-43 180.6 411 38.0
Migut.F01119 Erythranthe guttata HOM05D004189 ORTHO05D004092 1.5e-42 178.7 377 40.1
BcaC03g14545 Brassica carinata HOM05D004189 ORTHO05D004092 1.6e-41 175.3 432 37.5
Thecc.03G176700 Theobroma cacao HOM05D004189 ORTHO05D004092 4.7e-41 173.7 342 39.5
C02p19900 Brassica napus HOM05D004189 ORTHO05D004092 3.1e-40 171.0 428 37.6
BolC2t08123H Brassica oleracea HOM05D004189 ORTHO05D004092 3.1e-40 171.0 428 37.6
ECA238G1803 Erigeron canadensis HOM05D004189 ORTHO05D004092 4.0e-40 170.6 381 35.7
RcHm_v2.0_Chr1g0377331 Rosa chinensis HOM05D013146 ORTHO05D004092 4.0e-40 170.6 403 38.2
Nn6g33499 Nelumbo nucifera HOM05D004189 ORTHO05D004092 2.6e-39 167.9 408 35.0
A02p11900 Brassica napus HOM05D004189 ORTHO05D004092 4.4e-39 167.2 425 37.2
THA.LOC104811978 Tarenaya hassleriana HOM05D004189 ORTHO05D004092 7.6e-39 166.4 366 39.9
FAN01G1221 Fragaria x ananassa HOM05D013146 ORTHO05D004092 1.3e-38 165.6 414 36.0
Hund11746 Selenicereus undatus HOM05D004189 ORTHO05D004092 2.9e-38 164.5 412 34.5
Lj8A24G36 Lonicera japonica HOM05D004189 ORTHO05D004092 6.4e-38 163.3 339 38.6
FAN03G0716 Fragaria x ananassa HOM05D013146 ORTHO05D004092 2.4e-37 161.4 414 35.3
Dinv28441 Davidia involucrata HOM05D004189 ORTHO05D004092 9.2e-37 159.5 433 34.4
FAN03G0039 Fragaria x ananassa HOM05D013146 ORTHO05D004092 9.2e-37 159.5 422 34.6
Manes.06G147200 Manihot esculenta HOM05D004189 ORTHO05D004092 1.6e-36 158.7 415 33.7
Thhalv10013021m.g Eutrema salsugineum HOM05D004189 ORTHO05D004092 4.6e-36 157.1 455 34.7
AT5G52300 Arabidopsis thaliana HOM05D004189 ORTHO05D004092 2.3e-35 154.8 437 35.0
Carub.0008s1240 Capsella rubella HOM05D004189 ORTHO05D004092 5.1e-35 153.7 430 34.4
Migut.F00339 Erythranthe guttata HOM05D004189 ORTHO05D004092 1.6e-33 148.7 356 37.9
FAN10G2986 Fragaria x ananassa HOM05D013146 ORTHO05D004092 2.1e-33 148.3 451 33.3
Eucgr.A02790 Eucalyptus grandis HOM05D004189 ORTHO05D004092 3.1e-32 144.4 468 33.8
Aqoxy7G00356 Aquilegia oxysepala HOM05D004189 ORTHO05D004092 5.2e-32 143.7 497 32.4
BcaB05g21946 Brassica carinata HOM05D004189 ORTHO05D004092 8.9e-32 142.9 415 35.2
Carub.0007s1540 Capsella rubella HOM05D004189 ORTHO05D004092 2.0e-31 141.7 467 32.1
EL10Ac3g05642 Beta vulgaris HOM05D004189 ORTHO05D004092 3.4e-31 141.0 402 33.8
AL8G26690 Arabidopsis lyrata HOM05D004189 ORTHO05D004092 4.4e-31 140.6 397 34.3
arahy.Tifrunner.gnm1.ann1.E2ZRS1 Arachis hypogaea HOM05D004189 ORTHO05D004092 1.7e-30 138.7 538 29.7
PGR042G0303 Punica granatum HOM05D004189 ORTHO05D004092 2.9e-30 137.9 463 34.3
arahy.Tifrunner.gnm1.ann1.EQ3RBX Arachis hypogaea HOM05D004189 ORTHO05D004092 3.8e-30 137.5 535 30.1
Lsat_1_v5_gn_8_8621 Lactuca sativa HOM05D004189 ORTHO05D004092 3.8e-30 137.5 287 37.3
Nitab4.5_0003242g0020 Nicotiana tabacum HOM05D004189 ORTHO05D004092 4.9e-30 137.1 373 32.2
THA.LOC104800253 Tarenaya hassleriana HOM05D004189 ORTHO05D004092 4.9e-30 137.1 317 37.9
Lsat_1_v5_gn_2_132020 Lactuca sativa HOM05D004189 ORTHO05D004092 1.1e-29 136.0 426 31.5
CARHR265280 Cardamine hirsuta HOM05D004189 ORTHO05D004092 1.4e-29 135.6 454 32.8
DCAR_018199 Daucus carota HOM05D004189 ORTHO05D004092 3.2e-29 134.4 491 29.7
HanXRQChr07g0207021 Helianthus annuus HOM05D004189 ORTHO05D004092 1.2e-28 132.5 388 32.7
FAN10G2376 Fragaria x ananassa HOM05D013146 ORTHO05D004092 1.6e-28 132.1 465 31.4
CARHR233000 Cardamine hirsuta HOM05D004189 ORTHO05D004092 2.1e-28 131.7 380 35.3
arahy.Tifrunner.gnm1.ann1.4R9DEN Arachis hypogaea HOM05D001888 ORTHO05D001842 6.0e-28 130.2 427 32.3
MD07G1268800 Malus domestica HOM05D004189 ORTHO05D004092 7.8e-28 129.8 465 31.8
Oeu056256.2 Olea europaea HOM05D004189 ORTHO05D004092 7.8e-28 129.8 250 39.6
PSO782G0005 Papaver somniferum HOM05D004189 ORTHO05D004092 1.0e-27 129.4 441 31.3
RcHm_v2.0_Chr1g0377291 Rosa chinensis HOM05D013146 ORTHO05D004092 1.7e-27 128.6 408 31.1
AUR62015982 Chenopodium quinoa HOM05D004189 ORTHO05D004092 1.1e-26 125.9 382 33.2
Lalb_Chr19g0130831 Lupinus albus HOM05D004189 ORTHO05D004092 3.3e-26 124.4 276 37.7
arahy.Tifrunner.gnm1.ann1.06RI6S Arachis hypogaea HOM05D004189 ORTHO05D004092 4.3e-26 124.0 430 31.6
ECA233G5127 Erigeron canadensis HOM05D004189 ORTHO05D004092 4.3e-26 124.0 301 34.9
BraA03t14684Z Brassica rapa HOM05D004189 ORTHO05D004092 9.6e-26 122.9 415 33.7
A03p56110 Brassica napus HOM05D004189 ORTHO05D004092 1.3e-25 122.5 415 33.7
AUR62021191 Chenopodium quinoa HOM05D004189 ORTHO05D004092 1.3e-25 122.5 397 33.2
BolC7t45929H Brassica oleracea HOM05D004189 ORTHO05D004092 6.2e-25 120.2 415 32.8
Nn1g01463 Nelumbo nucifera HOM05D004189 ORTHO05D004092 6.2e-25 120.2 347 34.6
C07p54440 Brassica napus HOM05D004189 ORTHO05D004092 1.1e-24 119.4 415 33.0
FvH4_7g29491 Fragaria vesca HOM05D013146 ORTHO05D004092 2.4e-24 118.2 283 39.9
MBI18_g30543_MAGBIO Magnolia biondii HOM05D004189 ORTHO05D004092 3.1e-24 117.9 345 33.0
BcaB01g04200 Brassica carinata HOM05D004189 ORTHO05D004092 4.0e-24 117.5 534 30.3
Cfa008320 Carpinus fangiana HOM05D004189 ORTHO05D004092 4.0e-24 117.5 354 32.8
Sp7g23610 Schrenkiella parvula HOM05D004189 ORTHO05D004092 4.0e-24 117.5 423 31.2
FAN06G2021 Fragaria x ananassa HOM05D013146 ORTHO05D004092 5.3e-24 117.1 283 39.2
Rhsim03G0180900 Rhododendron simsii HOM05D004189 ORTHO05D004092 2.0e-23 115.2 533 27.8
FAN06G1386 Fragaria x ananassa HOM05D013146 ORTHO05D004092 3.4e-23 114.4 391 32.2
Nitab4.5_0002721g0060 Nicotiana tabacum HOM05D004189 ORTHO05D004092 3.4e-23 114.4 390 30.0
AT4G25580 Arabidopsis thaliana HOM05D004189 ORTHO05D004092 9.9e-23 112.8 393 32.3
Glyma.20G158500 Glycine max HOM05D004189 ORTHO05D004092 9.9e-23 112.8 430 30.2
Glyma.16G193200 Glycine max HOM05D004189 ORTHO05D004092 2.2e-22 111.7 352 35.2
Sp6g14560 Schrenkiella parvula HOM05D004189 ORTHO05D004092 2.2e-22 111.7 241 40.7
BcaC01g06182 Brassica carinata HOM05D004189 ORTHO05D004092 4.9e-22 110.5 468 30.6
A03p15730 Brassica napus HOM05D004189 ORTHO05D004092 6.4e-22 110.2 499 28.5
PSO478G0985 Papaver somniferum HOM05D004189 ORTHO05D004092 6.4e-22 110.2 489 28.2
BraA03t10863Z Brassica rapa HOM05D004189 ORTHO05D004092 8.4e-22 109.8 505 28.9
Prupe.2G294400 Prunus persica HOM05D004189 ORTHO05D004092 1.1e-21 109.4 403 31.0
Thhalv10024860m.g Eutrema salsugineum HOM05D004189 ORTHO05D004092 1.4e-21 109.0 397 30.0
VMungo0720G0841 Vigna mungo HOM05D004189 ORTHO05D004092 2.4e-21 108.2 381 32.0
Phvul.007G069800 Phaseolus vulgaris HOM05D004189 ORTHO05D004092 7.1e-21 106.7 383 31.6
Aa31LG3G8720 Aethionema arabicum HOM05D004189 ORTHO05D004092 9.3e-21 106.3 238 42.9
GSVIVG01028976001 Vitis vinifera HOM05D004189 ORTHO05D004092 2.7e-20 104.8 302 30.8
BcaC06g32799 Brassica carinata HOM05D004189 ORTHO05D004092 4.6e-20 104.0 377 32.9
Glyma.16G189900 Glycine max HOM05D004189 ORTHO05D004092 3.0e-19 101.3 262 37.0
Ca_10770_v3 Cicer arietinum L. HOM05D004189 ORTHO05D004092 6.7e-19 100.1 340 33.8
Potri.015G143950 Populus trichocarpa HOM05D004189 ORTHO05D004092 1.5e-18 99.0 372 30.1
Medtr1g100627 Medicago truncatula HOM05D004189 ORTHO05D004092 1.9e-18 98.6 380 33.2
Peaxi162Scf00234g00811 Petunia axillaris HOM05D004189 ORTHO05D004092 1.9e-18 98.6 383 28.7
CiPaw.03G106300 Carya illinoinensis HOM05D004189 ORTHO05D004092 2.5e-18 98.2 173 43.4
TPR.G10757 Trifolium pratense HOM05D004189 ORTHO05D004092 2.5e-18 98.2 242 37.2
Lj5g0019959 Lotus japonicus HOM05D004189 ORTHO05D004092 3.3e-18 97.8 374 31.6
CANSAT21G0752 Cannabis sativa HOM05D004189 ORTHO05D004092 5.6e-18 97.1 343 30.0
Ah.07g207200 Amaranthus hybridus HOM05D032681 ORTHO05D004092 9.6e-18 96.3 430 30.7
Glyma.09G139600 Glycine max HOM05D004189 ORTHO05D004092 2.1e-17 95.1 255 35.3
CANSAT21G0725 Cannabis sativa HOM05D004189 ORTHO05D004092 3.6e-17 94.4 403 26.8
CDE08G1026 Ceratophyllum demersum HOM05D004189 ORTHO05D004092 8.1e-17 93.2 369 29.5
Glyma.10G236000 Glycine max HOM05D004189 ORTHO05D004092 1.1e-16 92.8 382 30.9
Ca_25745_v3 Cicer arietinum L. HOM05D004189 ORTHO05D004092 1.8e-16 92.0 282 31.9
AL7G27520 Arabidopsis lyrata HOM05D004189 ORTHO05D004092 5.3e-16 90.5 447 28.2
ATR0680G076 Amborella trichopoda HOM05D004189 ORTHO05D004092 9.0e-16 89.7 312 31.4
HanXRQChr06g0183811 Helianthus annuus HOM05D004189 ORTHO05D004092 2.6e-15 88.2 291 31.3
Aa31LG7G12260 Aethionema arabicum HOM05D004189 ORTHO05D004092 9.9e-15 86.3 390 27.9
BolC3t14234H Brassica oleracea HOM05D004189 ORTHO05D004092 2.2e-14 85.1 480 27.1
arahy.Tifrunner.gnm1.ann1.UM41MD Arachis hypogaea HOM05D004189 ORTHO05D004092 6.4e-14 83.6 210 34.8
FAN06G3443 Fragaria x ananassa HOM05D013146 ORTHO05D004092 1.1e-13 82.8 217 33.6
Thhalv10015427m.g Eutrema salsugineum HOM05D004189 ORTHO05D004092 2.4e-13 81.6 329 31.3
SGA_v2.0_scaffold60G21043 Striga asiatica HOM05D004189 ORTHO05D004092 3.2e-13 81.3 196 36.2
FvH4_7g29480 Fragaria vesca HOM05D013146 ORTHO05D004092 4.2e-13 80.9 217 33.2
TPR.G14322 Trifolium pratense HOM05D004189 ORTHO05D004092 4.2e-13 80.9 384 28.1
C03p18370 Brassica napus HOM05D004189 ORTHO05D004092 3.5e-12 77.8 463 28.1
ClCG09G012920 Citrullus lanatus HOM05D004189 ORTHO05D004092 6.0e-12 77.0 368 27.4
Sopen01g005170 Solanum pennellii HOM05D000155 ORTHO05D000022 7.9e-12 76.6 119 42.9
Sp6g14580 Schrenkiella parvula HOM05D004189 ORTHO05D004092 1.3e-11 75.9 284 31.3
MELO3C003321.2 Cucumis melo HOM05D004189 ORTHO05D004092 2.3e-11 75.1 381 29.1
Medtr6g045273 Medicago truncatula HOM05D004189 ORTHO05D004092 2.3e-11 75.1 222 32.0
Lj2g0010006 Lotus japonicus HOM05D004189 ORTHO05D004092 3.9e-11 74.3 264 31.8
Hund04742 Selenicereus undatus HOM05D004189 ORTHO05D004092 6.7e-11 73.6 252 32.5
Solyc01g009660.3 Solanum lycopersicum HOM05D004189 ORTHO05D004092 1.1e-10 72.8 118 43.2
CAN.G166.11 Capsicum annuum HOM05D004189 ORTHO05D004092 1.5e-10 72.4 112 44.6
PSO782G3516 Papaver somniferum HOM05D064671 ORTHO05D004092 5.6e-10 70.5 282 29.8
PGSC0003DMG400030008 Solanum tuberosum HOM05D004189 ORTHO05D004092 9.6e-10 69.7 115 41.7
PSO478G2886 Papaver somniferum HOM05D064671 ORTHO05D004092 1.3e-09 69.3 283 29.0
Lalb_Chr21g0305031 Lupinus albus HOM05D004189 ORTHO05D004092 1.6e-09 68.9 171 36.3
BraA02t06255Z Brassica rapa HOM05D004189 ORTHO05D004092 6.2e-09 67.0 214 32.7
AL271U10030 Arabidopsis lyrata HOM05D004189 ORTHO05D004092 1.8e-08 65.5 207 30.9
SGA_v2.0_scaffold10G05341 Striga asiatica HOM05D026728 ORTHO05D004092 3.1e-08 64.7 73 47.9
Psat6g199400 Pisum sativum HOM05D004189 ORTHO05D004092 5.3e-08 63.9 352 26.4
CsaV3_3G049950 Cucumis sativus L. HOM05D004189 ORTHO05D004092 1.5e-07 62.4 241 30.7
THA.LOC104799430 Tarenaya hassleriana HOM05D006297 ORTHO05D007873 1.5e-07 62.4 113 38.1
Zm00001eb220700 Zea mays HOM05D036983 ORTHO05D037006 3.4e-07 61.2 124 37.1
MBI17_g21975_MAGBIO Magnolia biondii HOM05D004189 ORTHO05D004092 1.3e-06 59.3 115 37.4
Medtr1g100623 Medicago truncatula HOM05D004189 ORTHO05D004092 1.3e-06 59.3 109 38.5
PSO478G0660 Papaver somniferum HOM05D057890 ORTHO05D004092 1.3e-06 59.3 240 29.2
CARHR259130 Cardamine hirsuta HOM05D004189 ORTHO05D004092 1.7e-06 58.9 125 41.6
CARHR265290 Cardamine hirsuta HOM05D004189 ORTHO05D004092 2.2e-06 58.5 276 28.3
GSVIVG01031399001 Vitis vinifera HOM05D006297 ORTHO05D007873 2.2e-06 58.5 123 38.2
Sed0017584 Sechium edule HOM05D006297 ORTHO05D007873 2.9e-06 58.2 145 30.3
A08p21090 Brassica napus HOM05D002154 ORTHO05D002362 3.8e-06 57.8 88 44.3
BcaC01g01889 Brassica carinata HOM05D006297 ORTHO05D007873 6.5e-06 57.0 154 33.8
Thhalv10002567m.g Eutrema salsugineum HOM05D006297 ORTHO05D007873 6.5e-06 57.0 140 32.9
SalBow2G2574 Salvia bowleyana HOM05D004189 ORTHO05D004092 6.5e-06 57.0 139 37.4


User provided reference genes

Program Settings