Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0009663g0050 Nicotiana tabacum HOM05D000806 ORTHO05D002320 3.0e-84 315.1 155 100.0
CAN.G219.28 Capsicum annuum HOM05D001133 ORTHO05D000941 2.2e-58 229.2 183 66.1
Peaxi162Scf00021g00818 Petunia axillaris HOM05D000806 ORTHO05D002320 7.1e-49 197.6 202 56.9
CAN.G1183.3 Capsicum annuum HOM05D000806 ORTHO05D002320 6.2e-45 184.5 93 94.6
CAN.G1478.9 Capsicum annuum HOM05D000806 ORTHO05D002320 6.2e-45 184.5 93 94.6
Solyc00g500065.1 Solanum lycopersicum HOM05D000806 ORTHO05D002320 8.4e-42 174.1 97 87.6
CAN.G1012.4 Capsicum annuum HOM05D000806 ORTHO05D002320 1.0e-39 167.2 92 87.0
CSS0050017 Camellia sinensis var. sinensis HOM05D000806 ORTHO05D002320 1.3e-39 166.8 195 48.7
Hma1.2p1_0355F.1_g133926 Hydrangea macrophylla HOM05D000806 ORTHO05D002320 3.9e-39 165.2 180 51.1
Nn010s41447 Nelumbo nucifera HOM05D000806 ORTHO05D002320 5.3e-36 154.8 186 49.5
CAN.G1.10 Capsicum annuum HOM05D000806 ORTHO05D002320 1.6e-32 143.3 74 91.9
HanXRQChr00c0702g0576831 Helianthus annuus HOM05D000806 ORTHO05D002320 4.3e-30 135.2 175 45.7
HanXRQChr01g0020371 Helianthus annuus HOM05D000806 ORTHO05D002320 4.3e-30 135.2 175 45.7
HanXRQChr02g0044911 Helianthus annuus HOM05D000806 ORTHO05D002320 4.3e-30 135.2 175 45.7
HanXRQChr08g0210341 Helianthus annuus HOM05D000806 ORTHO05D002320 4.3e-30 135.2 175 45.7
HanXRQChr10g0289251 Helianthus annuus HOM05D000806 ORTHO05D002320 4.3e-30 135.2 175 45.7
HanXRQChr11g0326811 Helianthus annuus HOM05D000806 ORTHO05D002320 4.3e-30 135.2 175 45.7
HanXRQCPg0580021 Helianthus annuus HOM05D000806 ORTHO05D002320 4.3e-30 135.2 175 45.7
Solyc09g091410.2 Solanum lycopersicum HOM05D000806 ORTHO05D002320 4.3e-30 135.2 76 86.8
Nn010s41432 Nelumbo nucifera HOM05D000806 ORTHO05D002320 7.4e-30 134.4 198 42.9
MELO3C000334.2 Cucumis melo HOM05D000806 ORTHO05D002320 9.6e-30 134.0 92 69.6
PGR111G0026 Punica granatum HOM05D000806 ORTHO05D002320 9.6e-30 134.0 173 43.9
Ah.10g027380 Amaranthus hybridus HOM05D000806 ORTHO05D007429 2.1e-29 132.9 179 44.7
Ah.10g027510 Amaranthus hybridus HOM05D000806 ORTHO05D002324 2.1e-29 132.9 179 44.7
Lsat_1_v5_gn_7_98321 Lactuca sativa HOM05D000806 ORTHO05D002320 2.1e-29 132.9 157 49.0
HanXRQChr13g0413531 Helianthus annuus HOM05D000806 ORTHO05D002320 2.8e-29 132.5 175 44.6
Gohir.1Z049999 Gossypium hirsutum HOM05D000806 ORTHO05D002320 3.7e-29 132.1 93 68.8
HanXRQChr02g0041561 Helianthus annuus HOM05D000806 ORTHO05D002320 4.8e-29 131.7 172 45.9
Sed0009930 Sechium edule HOM05D000806 ORTHO05D002320 1.4e-28 130.2 92 66.3
Sed0026664 Sechium edule HOM05D000806 ORTHO05D002320 1.4e-28 130.2 92 66.3
Ah.10g027920 Amaranthus hybridus HOM05D000806 ORTHO05D002324 5.3e-28 128.3 177 44.1
Ah.10g028630 Amaranthus hybridus HOM05D000806 ORTHO05D002324 5.3e-28 128.3 177 44.1
RcHm_v2.0_Chr5g0042991 Rosa chinensis HOM05D000806 ORTHO05D002320 6.9e-28 127.9 94 66.0
RcHm_v2.0_CPg0502101 Rosa chinensis HOM05D000806 ORTHO05D002320 6.9e-28 127.9 94 66.0
Gohir.D01G102333 Gossypium hirsutum HOM05D000806 ORTHO05D002320 1.2e-27 127.1 93 65.6
DCAR_032493 Daucus carota HOM05D000806 ORTHO05D002320 2.0e-27 126.3 178 43.3
MELO3C029533.2 Cucumis melo HOM05D000806 ORTHO05D002320 1.0e-26 124.0 92 64.1
EL10As15g24118 Beta vulgaris HOM05D001133 ORTHO05D000941 3.2e-25 119.0 180 40.0
PSO548G0072 Papaver somniferum HOM05D000806 ORTHO05D002320 3.2e-25 119.0 89 67.4
EL10As15g24119 Beta vulgaris HOM05D000806 ORTHO05D002320 1.6e-24 116.7 90 63.3
Migut.L00565 Erythranthe guttata HOM05D000806 ORTHO05D002320 2.1e-24 116.3 88 68.2
Potri.013G162600 Populus trichocarpa HOM05D000806 ORTHO05D002320 4.6e-24 115.2 87 65.5
HanXRQChr10g0283541 Helianthus annuus HOM05D000806 ORTHO05D002320 5.1e-23 111.7 147 44.2
Eucgr.I02537 Eucalyptus grandis HOM05D000806 ORTHO05D002320 6.7e-23 111.3 91 61.5
MELO3C034228.2 Cucumis melo HOM05D000806 ORTHO05D002320 1.9e-22 109.8 75 66.7
MELO3C028653.2 Cucumis melo HOM05D000806 ORTHO05D002320 4.3e-22 108.6 72 70.8
LjContig00318g0000728 Lotus japonicus HOM05D000806 ORTHO05D002320 3.7e-21 105.5 105 54.3
BolSC29t60465H Brassica oleracea HOM05D000806 ORTHO05D002320 2.0e-19 99.8 92 56.5
BolSC46t60998H Brassica oleracea HOM05D000806 ORTHO05D002320 2.0e-19 99.8 92 56.5
BolSC47t61099H Brassica oleracea HOM05D000806 ORTHO05D002320 2.0e-19 99.8 92 56.5
CARHR282090 Cardamine hirsuta HOM05D000806 ORTHO05D002320 3.4e-19 99.0 112 50.9
C09p40220 Brassica napus HOM05D000806 ORTHO05D002320 4.5e-19 98.6 92 56.5
BraA06t25423Z Brassica rapa HOM05D000806 ORTHO05D002320 4.5e-19 98.6 92 56.5
BraSC140t45575Z Brassica rapa HOM05D000806 ORTHO05D007429 4.5e-19 98.6 92 56.5
AL2G21530 Arabidopsis lyrata HOM05D000806 ORTHO05D002320 5.8e-19 98.2 92 55.4
ATCG00500 Arabidopsis thaliana HOM05D000806 ORTHO05D002320 1.7e-18 96.7 93 53.8
Lsat_1_v5_gn_4_102681 Lactuca sativa HOM05D000806 ORTHO05D002320 1.7e-18 96.7 156 41.7
arahy.Tifrunner.gnm1.ann1.HP88CG Arachis hypogaea HOM05D000806 ORTHO05D002320 3.8e-18 95.5 99 55.6
Thhalv10011034m.g Eutrema salsugineum HOM05D000806 ORTHO05D002320 8.4e-18 94.4 92 55.4
Gohir.D04G129256 Gossypium hirsutum HOM05D000806 ORTHO05D002320 8.4e-18 94.4 93 51.6
arahy.Tifrunner.gnm1.ann1.0T2FMW Arachis hypogaea HOM05D000445 ORTHO05D000314 1.1e-17 94.0 89 58.4
Migut.D01360 Erythranthe guttata HOM05D000806 ORTHO05D002320 1.1e-17 94.0 167 40.1
Gorai.001G206400 Gossypium raimondii HOM05D001133 ORTHO05D000941 1.4e-17 93.6 126 46.0
SGA_v2.0_scaffold781G53597 Striga asiatica HOM05D000806 ORTHO05D002320 1.4e-17 93.6 79 58.2
Gohir.D13G043800 Gossypium hirsutum HOM05D000806 ORTHO05D002320 1.9e-17 93.2 84 57.1
Solyc04g039830.3 Solanum lycopersicum HOM05D000806 ORTHO05D002320 7.1e-17 91.3 121 49.6
Lj1g0000993 Lotus japonicus HOM05D000806 ORTHO05D002320 1.3e-15 87.0 82 52.4
arahy.Tifrunner.gnm1.ann1.J4M97S Arachis hypogaea HOM05D000806 ORTHO05D002320 2.5e-14 82.8 112 45.5
Gohir.A07G163645 Gossypium hirsutum HOM05D001133 ORTHO05D000941 3.1e-12 75.9 129 38.0
MELO3C031612.2 Cucumis melo HOM05D000806 ORTHO05D002320 1.3e-10 70.5 61 60.7
Gohir.1Z050266 Gossypium hirsutum HOM05D000806 ORTHO05D002320 1.3e-10 70.5 55 56.4
Gohir.A07G163654 Gossypium hirsutum HOM05D000806 ORTHO05D002320 2.2e-10 69.7 53 58.5
EL10As12g24027 Beta vulgaris HOM05D000806 ORTHO05D002320 5.0e-10 68.6 80 55.0
MD11G1294800 Malus domestica HOM05D000806 ORTHO05D002320 1.1e-09 67.4 54 57.4
Gorai.005G127400 Gossypium raimondii HOM05D000806 ORTHO05D002320 1.4e-09 67.0 66 48.5
HanXRQChr10g0284231 Helianthus annuus HOM05D000806 ORTHO05D002320 3.2e-09 65.9 36 75.0
Nn1g04062 Nelumbo nucifera HOM05D000806 ORTHO05D002320 2.7e-08 62.8 42 69.0
Nn1g07561 Nelumbo nucifera HOM05D000806 ORTHO05D002320 2.7e-08 62.8 42 69.0
MD02G1049500 Malus domestica HOM05D000806 ORTHO05D002320 7.9e-08 61.2 54 53.7
BolC9t55819H Brassica oleracea HOM05D000806 ORTHO05D002320 1.4e-07 60.5 52 51.9
Gohir.A09G101966 Gossypium hirsutum HOM05D000806 ORTHO05D002320 4.3e-06 55.5 87 35.6
arahy.Tifrunner.gnm1.ann1.3WU3U6 Arachis hypogaea HOM05D000806 ORTHO05D002320 5.7e-06 55.1 49 65.3


User provided reference genes

Program Settings