Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0009451g0070 Nicotiana tabacum HOM05D003893 ORTHO05D005167 4.6e-266 920.6 453 100.0
Nitab4.5_0000500g0300 Nicotiana tabacum HOM05D003893 ORTHO05D005167 2.1e-234 815.5 599 72.0
Solyc08g077850.2 Solanum lycopersicum HOM05D003893 ORTHO05D005167 9.5e-203 710.3 590 63.9
CAN.G572.10 Capsicum annuum HOM05D003893 ORTHO05D005167 8.9e-201 703.7 587 64.7
Peaxi162Scf00301g00417 Petunia axillaris HOM05D003893 ORTHO05D005167 1.3e-191 673.3 610 61.3
Sopen08g026360 Solanum pennellii HOM05D003893 ORTHO05D005167 6.4e-159 564.7 502 60.6
Dinv25135 Davidia involucrata HOM05D003893 ORTHO05D005167 6.3e-122 441.8 593 42.8
Cc08_g11340 Coffea canephora HOM05D003893 ORTHO05D005167 2.2e-119 433.3 610 42.0
QL12p008764 Quercus lobata HOM05D003893 ORTHO05D005167 1.8e-116 423.7 584 41.3
Actinidia25908 Actinidia chinensis HOM05D003893 ORTHO05D005167 2.2e-111 406.8 593 39.8
DCAR_005586 Daucus carota HOM05D003893 ORTHO05D005167 2.9e-111 406.4 589 40.2
Migut.E01633 Erythranthe guttata HOM05D003893 ORTHO05D005167 1.5e-110 404.1 602 38.5
CSS0002187 Camellia sinensis var. sinensis HOM05D003893 ORTHO05D005167 4.2e-110 402.5 594 39.4
Potri.001G150900 Populus trichocarpa HOM05D003893 ORTHO05D005167 7.5e-107 391.7 593 39.1
TAR375G0027 Trochodendron aralioides HOM05D003893 ORTHO05D005167 4.8e-106 389.0 592 38.9
Atru.chr9.1207 Acer truncatum HOM05D003893 ORTHO05D005167 2.7e-104 383.3 595 39.5
RcHm_v2.0_Chr7g0205631 Rosa chinensis HOM05D003893 ORTHO05D005167 7.7e-104 381.7 586 38.6
Duzib205G1731 Durio zibethinus HOM05D003893 ORTHO05D005167 2.3e-103 380.2 597 38.2
Gorai.008G230900 Gossypium raimondii HOM05D003893 ORTHO05D005167 4.2e-102 375.9 608 37.3
MSTRG.1953 Avicennia marina HOM05D003893 ORTHO05D005167 5.5e-102 375.6 588 38.4
Ciclev10024446m.g Citrus clementina HOM05D003893 ORTHO05D005167 4.7e-101 372.5 598 38.3
Sabra01G0120900 Salix brachista HOM05D003893 ORTHO05D005167 8.0e-101 371.7 574 38.9
Sc07g0009060 Simmondsia chinensis HOM05D003893 ORTHO05D005167 1.0e-100 371.3 590 37.8
Manes.01G088800 Manihot esculenta HOM05D003893 ORTHO05D005167 1.8e-100 370.5 593 38.6
Rhsim11G0002100 Rhododendron simsii HOM05D003893 ORTHO05D005167 4.0e-100 369.4 581 38.2
Gohir.A12G212800 Gossypium hirsutum HOM05D003893 ORTHO05D005167 1.5e-99 367.5 580 38.1
SGA_v2.0_scaffold20G09254 Striga asiatica HOM05D003893 ORTHO05D005167 5.7e-99 365.5 497 43.1
CANSAT21G1178 Cannabis sativa HOM05D003893 ORTHO05D005167 9.8e-99 364.8 587 37.8
Prupe.5G055400 Prunus persica HOM05D003893 ORTHO05D005167 1.3e-98 364.4 591 38.1
FvH4_5g20370 Fragaria vesca HOM05D003893 ORTHO05D005167 8.3e-98 361.7 587 37.3
Thecc.03G240200 Theobroma cacao HOM05D003893 ORTHO05D005167 1.4e-97 360.9 593 38.1
Eucgr.E00353 Eucalyptus grandis HOM05D003893 ORTHO05D005167 7.0e-97 358.6 584 37.0
Carub.0007s2378 Capsella rubella HOM05D003893 ORTHO05D005167 4.5e-96 355.9 588 36.1
FAN08G3381 Fragaria x ananassa HOM05D003893 ORTHO05D005167 1.0e-95 354.8 596 37.1
HanXRQChr16g0504541 Helianthus annuus HOM05D003893 ORTHO05D005167 1.7e-95 354.0 551 37.7
FAN18G3472 Fragaria x ananassa HOM05D003893 ORTHO05D005167 3.8e-95 352.8 596 36.6
AT4G17610 Arabidopsis thaliana HOM05D003893 ORTHO05D005167 1.5e-94 350.9 590 36.4
ECA233G0269 Erigeron canadensis HOM05D003893 ORTHO05D005167 3.3e-94 349.7 506 41.3
CARHR224310 Cardamine hirsuta HOM05D003893 ORTHO05D005167 9.5e-94 348.2 591 36.2
Thhalv10024195m.g Eutrema salsugineum HOM05D003893 ORTHO05D005167 1.6e-93 347.4 585 36.1
Ca_22016_v3 Cicer arietinum L. HOM05D003893 ORTHO05D005167 1.4e-92 344.4 589 37.0
Medtr4g099300 Medicago truncatula HOM05D003893 ORTHO05D005167 2.3e-92 343.6 587 35.9
AL7G36990 Arabidopsis lyrata HOM05D003893 ORTHO05D005167 8.9e-92 341.7 588 35.2
CsaV3_3G002270 Cucumis sativus L. HOM05D003893 ORTHO05D005167 1.2e-91 341.3 591 34.5
THA.LOC104798352 Tarenaya hassleriana HOM05D003893 ORTHO05D005167 1.5e-91 340.9 585 36.8
MELO3C013898.2 Cucumis melo HOM05D003893 ORTHO05D005167 7.5e-91 338.6 592 35.3
Aqoxy5G02623 Aquilegia oxysepala HOM05D003893 ORTHO05D005167 1.3e-90 337.8 594 36.2
Sp7g16550 Schrenkiella parvula HOM05D003893 ORTHO05D005167 2.2e-90 337.0 590 35.9
EL10Ac5g12271 Beta vulgaris HOM05D003893 ORTHO05D005167 3.7e-90 336.3 588 36.6
Psat4g076000 Pisum sativum HOM05D003893 ORTHO05D005167 3.7e-90 336.3 584 35.6
Aa31LG6G350 Aethionema arabicum HOM05D003893 ORTHO05D005167 4.9e-90 335.9 599 34.9
PSO732G0344 Papaver somniferum HOM05D003893 ORTHO05D005167 8.3e-90 335.1 587 35.6
Hund14479 Selenicereus undatus HOM05D003893 ORTHO05D005167 1.1e-89 334.7 578 36.9
BcaNung00076 Brassica carinata HOM05D003893 ORTHO05D005167 1.9e-89 334.0 591 34.7
Lalb_Chr09g0329781 Lupinus albus HOM05D003893 ORTHO05D005167 2.4e-89 333.6 588 36.1
TPR.G25755 Trifolium pratense HOM05D003893 ORTHO05D005167 2.4e-89 333.6 584 35.4
Lsat_1_v5_gn_6_67000 Lactuca sativa HOM05D003893 ORTHO05D005167 4.1e-89 332.8 554 37.0
PSO675G1423 Papaver somniferum HOM05D003893 ORTHO05D005167 5.4e-89 332.4 587 36.3
PGR042G1290 Punica granatum HOM05D003893 ORTHO05D005167 1.2e-88 331.3 584 34.8
Glyma.17G148200 Glycine max HOM05D003893 ORTHO05D005167 2.7e-88 330.1 596 35.6
BcaC09g51627 Brassica carinata HOM05D003893 ORTHO05D005167 5.0e-87 325.9 581 35.3
C01p11280 Brassica napus HOM05D003893 ORTHO05D005167 8.6e-87 325.1 584 35.6
BolC1t01093H Brassica oleracea HOM05D003893 ORTHO05D005167 8.6e-87 325.1 584 35.6
Phvul.003G225400 Phaseolus vulgaris HOM05D003893 ORTHO05D005167 8.6e-87 325.1 592 35.3
A01p09670 Brassica napus HOM05D003893 ORTHO05D005167 1.1e-86 324.7 585 34.9
Cfa012326 Carpinus fangiana HOM05D003893 ORTHO05D005167 2.5e-86 323.6 401 43.9
Sed0003705 Sechium edule HOM05D003893 ORTHO05D005167 5.6e-86 322.4 579 35.2
Lj4g0018101 Lotus japonicus HOM05D003893 ORTHO05D005167 2.8e-85 320.1 584 35.4
Oeu054285.1 Olea europaea HOM05D003893 ORTHO05D005167 4.7e-85 319.3 422 42.4
BraA01t00910Z Brassica rapa HOM05D003893 ORTHO05D005167 8.0e-85 318.5 592 34.3
ClCG10G002220 Citrullus lanatus HOM05D003893 ORTHO05D005167 2.3e-84 317.0 572 34.8
Lj8C277G4 Lonicera japonica HOM05D003893 ORTHO05D005167 1.2e-80 304.7 646 33.4
Gohir.D12G215300 Gossypium hirsutum HOM05D003893 ORTHO05D005167 1.1e-78 298.1 280 52.5
arahy.Tifrunner.gnm1.ann1.763U0W Arachis hypogaea HOM05D003893 ORTHO05D005167 2.9e-74 283.5 591 32.5
AUR62018840 Chenopodium quinoa HOM05D003893 ORTHO05D005167 2.9e-74 283.5 412 40.8
MD04G1055600 Malus domestica HOM05D003893 ORTHO05D005167 1.5e-67 261.2 262 52.3
VMungo0251G3747 Vigna mungo HOM05D003893 ORTHO05D005167 3.8e-66 256.5 700 29.1
SalBow1G0831 Salvia bowleyana HOM05D003893 ORTHO05D005167 1.9e-62 244.2 476 34.7
vmacro17755 Vaccinium macrocarpon HOM05D003893 ORTHO05D005167 3.3e-62 243.4 445 35.1
arahy.Tifrunner.gnm1.ann1.TA1JJE Arachis hypogaea HOM05D003893 ORTHO05D005167 9.6e-62 241.9 596 31.0
Zm00001eb000190 Zea mays HOM05D003893 ORTHO05D005167 1.3e-58 231.5 249 46.6
AUR62007166 Chenopodium quinoa HOM05D003893 ORTHO05D005167 4.3e-54 216.5 535 32.0
SEGI_27963 Sequoiadendron giganteum HOM05D003893 ORTHO05D005167 1.1e-52 211.8 242 44.6
Mapoly0105s0045 Marchantia polymorpha HOM05D003893 ORTHO05D005167 3.5e-48 196.8 279 39.1
CDE12G0047 Ceratophyllum demersum HOM05D003893 ORTHO05D005167 5.1e-47 193.0 172 54.1
COL.COLO4_07201 Corchorus olitorius HOM05D003893 ORTHO05D005167 5.6e-46 189.5 451 32.6
COL.COLO4_22133 Corchorus olitorius HOM05D003893 ORTHO05D005167 1.2e-40 171.8 452 31.6
Haze_08365 Corylus avellana HOM05D003893 ORTHO05D005167 7.9e-40 169.1 363 32.8
Haze_08366 Corylus avellana HOM05D003893 ORTHO05D005167 1.4e-36 158.3 130 55.4
Migut.E01263 Erythranthe guttata HOM05D003893 ORTHO05D005167 5.3e-36 156.4 271 35.8
ATR0665G055 Amborella trichopoda HOM05D003893 ORTHO05D005167 6.9e-36 156.0 486 28.2
Ah.07g199160 Amaranthus hybridus HOM05D003893 ORTHO05D005167 1.5e-30 138.3 128 51.6
SalBow1G6370 Salvia bowleyana HOM05D003893 ORTHO05D005167 7.4e-30 136.0 125 49.6
Ca_30504_v3 Cicer arietinum L. HOM05D003893 ORTHO05D005167 4.2e-25 120.2 113 46.9
CiPaw.11G072500 Carya illinoinensis HOM05D003893 ORTHO05D005167 5.7e-22 109.8 177 39.0
Os10g0142900 Oryza sativa ssp. japonica HOM05D003893 ORTHO05D005167 1.4e-20 105.1 122 45.9
C01p32750 Brassica napus HOM05D003893 ORTHO05D017260 2.4e-20 104.4 265 30.6
unitig_21.g20369 Utricularia gibba HOM05D003893 ORTHO05D005167 9.1e-20 102.4 319 30.4
BcaC09g49809 Brassica carinata HOM05D003893 ORTHO05D017260 2.0e-14 84.7 116 37.1
CBR_g21120 Chara braunii HOM05D003893 ORTHO05D005167 2.0e-14 84.7 217 29.5
Ah.07g199150 Amaranthus hybridus HOM05D003893 ORTHO05D017260 2.2e-13 81.3 89 43.8
A01p25860 Brassica napus HOM05D003893 ORTHO05D017260 2.8e-13 80.9 105 39.0
BcaB04g18068 Brassica carinata HOM05D003893 ORTHO05D017260 1.0e-07 62.4 91 34.1
BcaC09g49608 Brassica carinata HOM05D000205 ORTHO05D017260 1.5e-06 58.5 70 35.7
BcaB07g32633 Brassica carinata HOM05D003893 ORTHO05D017260 2.6e-06 57.8 78 37.2


User provided reference genes

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