Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0009303g0010 Nicotiana tabacum HOM05D007200 ORTHO05D009030 1.9e-150 535.8 270 100.0
Nitab4.5_0002420g0030 Nicotiana tabacum HOM05D007200 ORTHO05D009030 1.2e-141 506.5 282 91.1
Peaxi162Scf00071g00636 Petunia axillaris HOM05D007200 ORTHO05D009030 9.3e-121 437.2 282 80.1
PGSC0003DMG400007427 Solanum tuberosum HOM05D007200 ORTHO05D009030 7.6e-107 391.0 278 74.5
CAN.G321.37 Capsicum annuum HOM05D007200 ORTHO05D009030 5.1e-103 378.3 270 74.1
Solyc11g008480.2 Solanum lycopersicum HOM05D007200 ORTHO05D009030 1.5e-102 376.7 278 71.9
Sopen11g004260 Solanum pennellii HOM05D007200 ORTHO05D009030 5.6e-102 374.8 263 74.5
HanXRQChr11g0339441 Helianthus annuus HOM05D007200 ORTHO05D009030 9.3e-97 357.5 263 68.8
Manes.08G119500 Manihot esculenta HOM05D007200 ORTHO05D009030 1.2e-96 357.1 281 65.8
Ciclev10002020m.g Citrus clementina HOM05D007200 ORTHO05D009030 2.7e-96 355.9 290 62.4
CSS0011307 Camellia sinensis var. sinensis HOM05D007200 ORTHO05D009030 1.3e-95 353.6 276 65.2
GSVIVG01031113001 Vitis vinifera HOM05D007200 ORTHO05D009030 1.8e-95 353.2 274 67.2
TWI12G0470 Tripterygium wilfordii HOM05D007200 ORTHO05D009030 3.9e-95 352.1 272 65.1
Duzib177G0869 Durio zibethinus HOM05D007200 ORTHO05D009030 5.1e-95 351.7 290 63.4
Thecc.05G310900 Theobroma cacao HOM05D007200 ORTHO05D009030 8.7e-95 350.9 290 63.8
Actinidia24645 Actinidia chinensis HOM05D007200 ORTHO05D009030 1.1e-94 350.5 282 64.2
DCAR_001939 Daucus carota HOM05D007200 ORTHO05D009030 3.3e-94 349.0 285 64.2
FAN14G1797 Fragaria x ananassa HOM05D007200 ORTHO05D009030 4.3e-94 348.6 291 63.2
CANSAT54G2021 Cannabis sativa HOM05D007200 ORTHO05D009030 9.6e-94 347.4 280 64.6
MD12G1216700 Malus domestica HOM05D007200 ORTHO05D009030 1.3e-93 347.1 284 63.7
Nn3g21404 Nelumbo nucifera HOM05D007200 ORTHO05D009030 1.3e-93 347.1 292 61.6
FvH4_6g06280 Fragaria vesca HOM05D007200 ORTHO05D009030 2.1e-93 346.3 291 62.9
TAR365G0906 Trochodendron aralioides HOM05D007200 ORTHO05D009030 3.7e-93 345.5 282 62.1
Sabra05G0032400 Salix brachista HOM05D007200 ORTHO05D009030 4.8e-93 345.1 276 65.2
TAR365G0308 Trochodendron aralioides HOM05D007200 ORTHO05D009030 4.8e-93 345.1 282 62.1
RcHm_v2.0_Chr3g0455321 Rosa chinensis HOM05D007200 ORTHO05D009030 6.2e-93 344.7 289 61.9
Rhsim05G0141700 Rhododendron simsii HOM05D007200 ORTHO05D009030 1.8e-92 343.2 263 65.4
ECA236G3394 Erigeron canadensis HOM05D007200 ORTHO05D009030 5.3e-92 341.7 274 65.7
Haze_04164 Corylus avellana HOM05D007200 ORTHO05D009030 6.9e-92 341.3 277 62.8
FAN09G0829 Fragaria x ananassa HOM05D007200 ORTHO05D009030 9.0e-92 340.9 291 61.2
Gohir.A11G266300 Gossypium hirsutum HOM05D007200 ORTHO05D009030 2.0e-91 339.7 285 62.1
AUR62000793 Chenopodium quinoa HOM05D007200 ORTHO05D009030 4.5e-91 338.6 283 60.4
VMungo0720G1786 Vigna mungo HOM05D007200 ORTHO05D009030 5.8e-91 338.2 247 69.6
QL03p012758 Quercus lobata HOM05D007200 ORTHO05D009030 7.6e-91 337.8 286 60.8
AUR62005175 Chenopodium quinoa HOM05D007200 ORTHO05D009030 2.9e-90 335.9 282 60.3
Glyma.10G153100 Glycine max HOM05D007200 ORTHO05D009030 5.0e-90 335.1 247 68.0
Cfa006611 Carpinus fangiana HOM05D007200 ORTHO05D009030 6.5e-90 334.7 292 59.2
Gorai.007G298700 Gossypium raimondii HOM05D007200 ORTHO05D009030 8.4e-90 334.3 285 61.4
Atru.chr12.1493 Acer truncatum HOM05D007200 ORTHO05D009030 1.9e-89 333.2 285 61.8
Gohir.D11G276600 Gossypium hirsutum HOM05D007200 ORTHO05D009030 1.9e-89 333.2 285 61.1
Phvul.007G196200 Phaseolus vulgaris HOM05D007200 ORTHO05D009030 1.9e-89 333.2 247 68.0
Eucgr.B01933 Eucalyptus grandis HOM05D007200 ORTHO05D009030 1.6e-88 330.1 266 63.2
Lsat_1_v5_gn_9_87521 Lactuca sativa HOM05D007200 ORTHO05D009030 1.6e-88 330.1 276 63.0
Lj9C128T5 Lonicera japonica HOM05D007200 ORTHO05D009030 1.6e-88 330.1 265 64.2
Prupe.6G323000 Prunus persica HOM05D007200 ORTHO05D009030 2.1e-88 329.7 249 67.9
PGR083G0889 Punica granatum HOM05D007200 ORTHO05D009030 2.7e-88 329.3 288 59.7
Medtr1g083110 Medicago truncatula HOM05D007200 ORTHO05D009030 1.0e-87 327.4 261 64.4
COL.COLO4_10491 Corchorus olitorius HOM05D007200 ORTHO05D009030 1.8e-87 326.6 268 64.2
Lalb_Chr21g0310651 Lupinus albus HOM05D007200 ORTHO05D009030 1.8e-87 326.6 271 62.0
Aqoxy5G00700 Aquilegia oxysepala HOM05D007200 ORTHO05D009030 5.1e-87 325.1 285 60.0
CiPaw.07G020000 Carya illinoinensis HOM05D007200 ORTHO05D009030 1.1e-86 323.9 271 60.5
Migut.O00553 Erythranthe guttata HOM05D007200 ORTHO05D009030 2.5e-86 322.8 277 60.6
Migut.N01991 Erythranthe guttata HOM05D007200 ORTHO05D009030 5.7e-86 321.6 266 61.7
Lj5g0005198 Lotus japonicus HOM05D007200 ORTHO05D009030 1.3e-85 320.5 269 61.7
Psat6g149880 Pisum sativum HOM05D007200 ORTHO05D009030 2.2e-85 319.7 274 62.0
arahy.Tifrunner.gnm1.ann1.PH9A9F Arachis hypogaea HOM05D007200 ORTHO05D009030 1.1e-84 317.4 239 68.6
Aa31LG5G15970 Aethionema arabicum HOM05D007200 ORTHO05D009030 1.4e-84 317.0 249 63.9
Cc02_g31060 Coffea canephora HOM05D007200 ORTHO05D009030 1.8e-84 316.6 251 66.1
Sed0020284 Sechium edule HOM05D007200 ORTHO05D009030 1.8e-84 316.6 251 66.5
Lj9C124T9 Lonicera japonica HOM05D007200 ORTHO05D009030 2.4e-84 316.2 289 58.5
Cpa.g.sc48.76 Carica papaya HOM05D007200 ORTHO05D009030 4.1e-84 315.5 283 58.0
CARHR079750 Cardamine hirsuta HOM05D007200 ORTHO05D009030 5.3e-84 315.1 265 61.1
arahy.Tifrunner.gnm1.ann1.H2XQXC Arachis hypogaea HOM05D007200 ORTHO05D009030 6.9e-84 314.7 239 68.2
THA.LOC104818708 Tarenaya hassleriana HOM05D007200 ORTHO05D009030 6.9e-84 314.7 285 58.9
TPR.G6036 Trifolium pratense HOM05D007200 ORTHO05D009030 9.0e-84 314.3 271 60.1
Thhalv10021289m.g Eutrema salsugineum HOM05D007200 ORTHO05D009030 2.0e-83 313.2 249 63.1
vmacro19623 Vaccinium macrocarpon HOM05D007200 ORTHO05D009030 4.5e-83 312.0 255 64.3
BcaC05g30148 Brassica carinata HOM05D007200 ORTHO05D009030 5.9e-83 311.6 249 63.9
AT3G05410 Arabidopsis thaliana HOM05D007200 ORTHO05D009030 7.7e-83 311.2 281 59.1
BraA05t23030Z Brassica rapa HOM05D007200 ORTHO05D009030 1.0e-82 310.8 249 64.7
CsaV3_2G006520 Cucumis sativus L. HOM05D007200 ORTHO05D009030 1.0e-82 310.8 250 64.8
AL3G15960 Arabidopsis lyrata HOM05D007200 ORTHO05D009030 1.3e-82 310.5 288 58.0
FAN02G4393 Fragaria x ananassa HOM05D007200 ORTHO05D009030 1.7e-82 310.1 286 58.0
Carub.0003s0469 Capsella rubella HOM05D007200 ORTHO05D009030 2.9e-82 309.3 277 59.2
Sp3g04270 Schrenkiella parvula HOM05D007200 ORTHO05D009030 2.9e-82 309.3 278 58.3
BolC5t34842H Brassica oleracea HOM05D007200 ORTHO05D000438 5.0e-82 308.5 249 63.9
BcaC05g30124 Brassica carinata HOM05D007200 ORTHO05D009030 1.4e-81 307.0 249 63.5
MELO3C004233.2 Cucumis melo HOM05D007200 ORTHO05D009030 3.2e-81 305.8 253 63.6
EL10Ac4g09392 Beta vulgaris HOM05D007200 ORTHO05D009030 6.1e-80 301.6 285 54.0
Ah.04g160430 Amaranthus hybridus HOM05D007200 ORTHO05D009030 3.0e-79 299.3 257 59.1
SGA_v2.0_scaffold98G29315 Striga asiatica HOM05D007200 ORTHO05D009030 3.3e-78 295.8 262 58.4
unitig_746.g26859 Utricularia gibba HOM05D004477 ORTHO05D005615 1.3e-77 293.9 249 61.0
MSTRG.27987 Avicennia marina HOM05D007200 ORTHO05D009030 1.7e-77 293.5 273 57.1
Zm00001eb142170 Zea mays HOM05D007200 ORTHO05D009030 1.4e-76 290.4 250 59.6
FAN05G3823 Fragaria x ananassa HOM05D000179 ORTHO05D009030 6.9e-76 288.1 222 65.3
MBI19_g12813_MAGBIO Magnolia biondii HOM05D007200 ORTHO05D009030 5.9e-75 285.0 256 59.8
CANSAT54G2778 Cannabis sativa HOM05D007200 ORTHO05D009030 8.5e-74 281.2 209 67.9
ATR0706G032 Amborella trichopoda HOM05D007200 ORTHO05D009030 3.2e-73 279.3 249 59.8
PSO210G0998 Papaver somniferum HOM05D007200 ORTHO05D009030 6.1e-72 275.0 285 54.4
BcaC05g30126 Brassica carinata HOM05D007200 ORTHO05D009030 1.0e-71 274.2 237 61.6
ClCG02G015570 Citrullus lanatus HOM05D007200 ORTHO05D009030 1.4e-71 273.9 253 60.1
PSO832G2855 Papaver somniferum HOM05D007200 ORTHO05D009030 4.8e-69 265.4 285 54.4
CDE02G3507 Ceratophyllum demersum HOM05D007200 ORTHO05D009030 5.3e-68 261.9 275 53.1
Potri.005G027100 Populus trichocarpa HOM05D007200 ORTHO05D009030 6.1e-64 248.4 211 64.0
HPP92_006928 Vanilla planifolia HOM05D000065 ORTHO05D001606 5.3e-60 235.3 233 54.5
Os01g0934400 Oryza sativa ssp. japonica HOM05D007200 ORTHO05D009030 5.5e-57 225.3 179 61.5
AagrBONN_evm.TU.Sc2ySwM_228.2760 Anthoceros agrestis HOM05D007200 ORTHO05D009030 1.3e-50 204.1 243 46.5
Pp3c2_22000 Physcomitrium patens HOM05D007200 ORTHO05D009030 8.5e-50 201.4 248 46.8
Mapoly0092s0016 Marchantia polymorpha HOM05D007200 ORTHO05D009030 3.0e-47 193.0 239 43.9
Hund07085 Selenicereus undatus HOM05D007200 ORTHO05D009030 4.0e-47 192.6 177 55.4
SMO140G0101 Selaginella moellendorffii HOM05D007200 ORTHO05D009030 2.2e-45 186.8 238 45.8
AUR62004827 Chenopodium quinoa HOM05D007200 ORTHO05D009030 1.2e-40 171.0 170 53.5
SGA_v2.0_scaffold95G28806 Striga asiatica HOM05D007200 ORTHO05D009030 1.2e-40 171.0 160 57.5
Sc16g0008540 Simmondsia chinensis HOM05D007200 ORTHO05D009030 8.9e-39 164.9 174 55.2
CBR_g32304 Chara braunii HOM05D007200 ORTHO05D009030 4.9e-37 159.1 266 36.1
MCO07G015 Micromonas commoda HOM05D007200 ORTHO05D009030 2.9e-34 149.8 241 39.8
Oeu012109.1 Olea europaea HOM05D007200 ORTHO05D009030 8.6e-34 148.3 105 66.7
PRCOL_00003141 Prasinoderma coloniale HOM05D007200 ORTHO05D009030 2.5e-33 146.7 235 41.3
Cre09.g389578 Chlamydomonas reinhardtii HOM05D007200 ORTHO05D009030 1.2e-32 144.4 257 36.2
Actinidia19786 Actinidia chinensis HOM05D007200 ORTHO05D009030 8.0e-32 141.7 107 60.7
MD04G1202900 Malus domestica HOM05D007200 ORTHO05D009030 1.1e-25 121.3 122 54.9
C05p61820 Brassica napus HOM05D000205 ORTHO05D000438 5.6e-25 119.0 132 53.0
Os01g0934350 Oryza sativa ssp. japonica HOM05D007200 ORTHO05D009030 5.4e-12 75.9 61 62.3
CAN.G1228.6 Capsicum annuum HOM05D002933 ORTHO05D007742 1.7e-10 70.9 143 32.9
PSO135G0212 Papaver somniferum HOM05D002933 ORTHO05D007742 1.5e-09 67.8 102 34.3
AUR62032114 Chenopodium quinoa HOM05D002933 ORTHO05D007742 1.9e-09 67.4 220 25.9
AUR62039657 Chenopodium quinoa HOM05D002933 ORTHO05D007742 2.5e-09 67.0 218 25.7
PSO384G2709 Papaver somniferum HOM05D002933 ORTHO05D007742 3.3e-09 66.6 102 34.3
BcaC02g09745 Brassica carinata HOM05D002933 ORTHO05D007742 5.6e-09 65.9 238 26.1
BolC4t25275H Brassica oleracea HOM05D002933 ORTHO05D007742 5.6e-09 65.9 238 26.1
A04p04610 Brassica napus HOM05D002933 ORTHO05D007742 7.3e-09 65.5 173 28.9
BraA04t16171Z Brassica rapa HOM05D002933 ORTHO05D007742 7.3e-09 65.5 173 28.9
Hma1.2p1_0060F.1_g032910 Hydrangea macrophylla HOM05D002933 ORTHO05D007742 7.3e-09 65.5 172 27.3
PGSC0003DMG400024531 Solanum tuberosum HOM05D002933 ORTHO05D007742 9.6e-09 65.1 143 30.8
Ah.11g047550 Amaranthus hybridus HOM05D006809 ORTHO05D008609 1.2e-08 64.7 252 23.8
Carub.0005s2198 Capsella rubella HOM05D002933 ORTHO05D007742 2.1e-08 63.9 173 27.7
BcaB02g08429 Brassica carinata HOM05D002933 ORTHO05D007742 2.8e-08 63.5 144 29.9
Solyc03g114930.3 Solanum lycopersicum HOM05D002933 ORTHO05D007742 3.6e-08 63.2 143 30.1
Sopen03g034010 Solanum pennellii HOM05D002933 ORTHO05D007742 3.6e-08 63.2 143 30.1
unitig_52.g17502 Utricularia gibba HOM05D002933 ORTHO05D007742 3.6e-08 63.2 116 35.3
Thhalv10010685m.g Eutrema salsugineum HOM05D002933 ORTHO05D007742 6.2e-08 62.4 144 29.2
Hund02566 Selenicereus undatus HOM05D002933 ORTHO05D007742 8.1e-08 62.0 116 32.8
EL10Ac5g11164 Beta vulgaris HOM05D002933 ORTHO05D007742 1.4e-07 61.2 141 28.4
Migut.B00505 Erythranthe guttata HOM05D002933 ORTHO05D007742 3.1e-07 60.1 116 29.3
PRCOL_00000618 Prasinoderma coloniale HOM05D002933 ORTHO05D007742 4.4e-06 56.2 171 25.7


User provided reference genes

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