Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0009301g0040 Nicotiana tabacum HOM05D003706 ORTHO05D004487 4.7e-88 327.8 162 100.0
Nitab4.5_0006805g0040 Nicotiana tabacum HOM05D003706 ORTHO05D004487 1.7e-74 282.7 171 84.2
CAN.G1856.6 Capsicum annuum HOM05D003706 ORTHO05D004487 1.5e-70 269.6 171 79.5
Peaxi162Scf00260g00418 Petunia axillaris HOM05D003706 ORTHO05D004487 1.5e-70 269.6 163 84.7
Peaxi162Scf00190g01214 Petunia axillaris HOM05D003706 ORTHO05D004487 1.3e-69 266.5 161 83.2
PGSC0003DMG400026229 Solanum tuberosum HOM05D003706 ORTHO05D004487 3.2e-68 261.9 165 81.2
Lj2C226G3 Lonicera japonica HOM05D003706 ORTHO05D004487 5.5e-68 261.2 156 82.1
Solyc08g078140.3 Solanum lycopersicum HOM05D003706 ORTHO05D004487 7.1e-68 260.8 165 80.6
Solyc06g060850.3 Solanum lycopersicum HOM05D003706 ORTHO05D004487 9.3e-68 260.4 162 82.1
Sopen06g021000 Solanum pennellii HOM05D003706 ORTHO05D004487 9.3e-68 260.4 162 82.1
PGSC0003DMG400024158 Solanum tuberosum HOM05D003706 ORTHO05D004487 2.1e-67 259.2 162 82.1
Nitab4.5_0000618g0150 Nicotiana tabacum HOM05D003706 ORTHO05D004487 6.0e-67 257.7 163 81.0
Nitab4.5_0002206g0070 Nicotiana tabacum HOM05D003706 ORTHO05D004487 7.9e-67 257.3 163 80.4
Hma1.2p1_0821F.1_g224200 Hydrangea macrophylla HOM05D003706 ORTHO05D004487 3.0e-66 255.4 169 75.7
Manes.02G042700 Manihot esculenta HOM05D003706 ORTHO05D004487 1.5e-65 253.1 172 74.4
Dinv28848 Davidia involucrata HOM05D003706 ORTHO05D004487 1.9e-65 252.7 169 76.3
Dinv39188 Davidia involucrata HOM05D003706 ORTHO05D004487 1.9e-65 252.7 169 76.3
Dinv21679 Davidia involucrata HOM05D003706 ORTHO05D004487 4.3e-65 251.5 169 75.1
Oeu040685.1 Olea europaea HOM05D003706 ORTHO05D004487 5.6e-65 251.1 169 75.1
SGA_v2.0_scaffold104G30203 Striga asiatica HOM05D003706 ORTHO05D004487 5.6e-65 251.1 159 78.6
SGA_v2.0_scaffold199G41234 Striga asiatica HOM05D003706 ORTHO05D004487 5.6e-65 251.1 146 83.6
TWI15G0458 Tripterygium wilfordii HOM05D003706 ORTHO05D004487 1.3e-64 250.0 162 77.8
Duzib084G0672 Durio zibethinus HOM05D003706 ORTHO05D004487 1.6e-64 249.6 154 79.2
Potri.003G081000 Populus trichocarpa HOM05D003706 ORTHO05D004487 2.8e-64 248.8 172 73.3
Actinidia25892 Actinidia chinensis HOM05D003706 ORTHO05D004487 3.7e-64 248.4 169 73.4
Sabra03G0052000 Salix brachista HOM05D003706 ORTHO05D004487 6.2e-64 247.7 172 74.4
Lalb_Chr05g0221021 Lupinus albus HOM05D003706 ORTHO05D004487 1.8e-63 246.1 167 73.7
CANSAT21G1120 Cannabis sativa HOM05D003706 ORTHO05D004487 3.1e-63 245.4 172 70.9
Migut.A01026 Erythranthe guttata HOM05D003706 ORTHO05D004487 4.0e-63 245.0 169 74.0
Manes.01G085700 Manihot esculenta HOM05D003706 ORTHO05D004487 5.3e-63 244.6 162 76.5
TAR636G2892 Trochodendron aralioides HOM05D003706 ORTHO05D004487 6.9e-63 244.2 167 73.7
CSS0020819 Camellia sinensis var. sinensis HOM05D003706 ORTHO05D004487 9.0e-63 243.8 169 72.8
Cpa.g.sc89.37 Carica papaya HOM05D003706 ORTHO05D004487 9.0e-63 243.8 164 73.2
HanXRQChr16g0511641 Helianthus annuus HOM05D003706 ORTHO05D004487 1.2e-62 243.4 160 76.9
Glyma.17G145500 Glycine max HOM05D003706 ORTHO05D004487 2.0e-62 242.7 161 75.8
Lalb_Chr05g0214291 Lupinus albus HOM05D003706 ORTHO05D004487 2.0e-62 242.7 166 71.7
Cc08_g11880 Coffea canephora HOM05D003706 ORTHO05D004487 3.4e-62 241.9 168 73.8
Gohir.D08G185500 Gossypium hirsutum HOM05D003706 ORTHO05D004487 3.4e-62 241.9 157 76.4
GSVIVG01004795001 Vitis vinifera HOM05D003706 ORTHO05D004487 3.4e-62 241.9 157 75.8
MSTRG.12138 Avicennia marina HOM05D003706 ORTHO05D004487 4.5e-62 241.5 169 71.6
FAN04G0187 Fragaria x ananassa HOM05D003706 ORTHO05D004487 4.5e-62 241.5 154 77.9
Lsat_1_v5_gn_9_30321 Lactuca sativa HOM05D003706 ORTHO05D004487 4.5e-62 241.5 165 75.8
COL.COLO4_10024 Corchorus olitorius HOM05D003706 ORTHO05D004487 5.8e-62 241.1 167 71.9
Glyma.05G063800 Glycine max HOM05D003706 ORTHO05D004487 5.8e-62 241.1 161 75.2
Gorai.004G194900 Gossypium raimondii HOM05D003706 ORTHO05D004487 5.8e-62 241.1 157 76.4
PGR042G3774 Punica granatum HOM05D003706 ORTHO05D004487 7.6e-62 240.7 172 69.8
CAN.G62.15 Capsicum annuum HOM05D003706 ORTHO05D004487 1.0e-61 240.4 163 76.1
FAN08G3606 Fragaria x ananassa HOM05D003706 ORTHO05D004487 1.0e-61 240.4 154 77.3
RcHm_v2.0_Chr7g0204661 Rosa chinensis HOM05D003706 ORTHO05D004487 1.0e-61 240.4 164 74.4
THA.LOC104813337 Tarenaya hassleriana HOM05D003706 ORTHO05D004487 1.0e-61 240.4 174 69.5
TAR629G3078 Trochodendron aralioides HOM05D003706 ORTHO05D004487 1.0e-61 240.4 159 74.8
Duzib068G0005 Durio zibethinus HOM05D003706 ORTHO05D004487 1.3e-61 240.0 162 73.5
FAN13G2930 Fragaria x ananassa HOM05D003706 ORTHO05D004487 1.3e-61 240.0 160 75.0
arahy.Tifrunner.gnm1.ann1.JF7LYS Arachis hypogaea HOM05D003706 ORTHO05D004487 1.7e-61 239.6 156 76.3
arahy.Tifrunner.gnm1.ann1.MI1D26 Arachis hypogaea HOM05D003706 ORTHO05D004487 1.7e-61 239.6 156 76.3
Ciclev10023537m.g Citrus clementina HOM05D003706 ORTHO05D004487 1.7e-61 239.6 162 71.6
Phvul.003G223748 Phaseolus vulgaris HOM05D003706 ORTHO05D004487 1.7e-61 239.6 161 73.9
FAN18G2986 Fragaria x ananassa HOM05D003706 ORTHO05D004487 2.9e-61 238.8 155 76.1
Gohir.A08G166700 Gossypium hirsutum HOM05D003706 ORTHO05D004487 2.9e-61 238.8 167 72.5
MD04G1057500 Malus domestica HOM05D003706 ORTHO05D004487 2.9e-61 238.8 157 74.5
QL12p009718 Quercus lobata HOM05D003706 ORTHO05D004487 2.9e-61 238.8 172 70.3
Sed0008996 Sechium edule HOM05D003706 ORTHO05D004487 3.8e-61 238.4 173 71.7
CiPaw.11G084300 Carya illinoinensis HOM05D003706 ORTHO05D004487 4.9e-61 238.0 162 72.8
ClCG10G002430 Citrullus lanatus HOM05D003706 ORTHO05D004487 4.9e-61 238.0 173 70.5
Lj4g0012322 Lotus japonicus HOM05D003706 ORTHO05D004487 4.9e-61 238.0 169 72.2
vmacro00025 Vaccinium macrocarpon HOM05D003706 ORTHO05D004487 4.9e-61 238.0 168 71.4
Prupe.5G061500 Prunus persica HOM05D003706 ORTHO05D004487 6.5e-61 237.7 167 71.9
QL12p009287 Quercus lobata HOM05D003706 ORTHO05D004487 6.5e-61 237.7 172 69.8
ECA240G2285 Erigeron canadensis HOM05D003706 ORTHO05D004487 8.4e-61 237.3 166 73.5
Lalb_Chr16g0386511 Lupinus albus HOM05D003706 ORTHO05D004487 8.4e-61 237.3 167 71.9
MD06G1051100 Malus domestica HOM05D003706 ORTHO05D004487 8.4e-61 237.3 172 69.2
Thecc.03G244800 Theobroma cacao HOM05D003706 ORTHO05D004487 8.4e-61 237.3 167 71.3
arahy.Tifrunner.gnm1.ann1.P7CRZW Arachis hypogaea HOM05D003706 ORTHO05D004487 1.1e-60 236.9 172 69.8
arahy.Tifrunner.gnm1.ann1.PS7EZR Arachis hypogaea HOM05D003706 ORTHO05D004487 1.1e-60 236.9 172 69.8
SalBow7G0213 Salvia bowleyana HOM05D003706 ORTHO05D004487 1.4e-60 236.5 169 69.2
DCAR_000641 Daucus carota HOM05D003706 ORTHO05D004487 1.9e-60 236.1 172 69.8
FvH4_5g19870 Fragaria vesca HOM05D003706 ORTHO05D004487 1.9e-60 236.1 154 75.3
Gohir.A12G214200 Gossypium hirsutum HOM05D003706 ORTHO05D004487 1.9e-60 236.1 168 70.2
Oeu031158.1 Olea europaea HOM05D003706 ORTHO05D004487 3.2e-60 235.3 167 73.1
EL10Ac5g12313 Beta vulgaris HOM05D003706 ORTHO05D004487 4.2e-60 235.0 166 71.1
Gohir.D12G216800 Gossypium hirsutum HOM05D003706 ORTHO05D004487 5.5e-60 234.6 168 69.6
Gorai.008G232400 Gossypium raimondii HOM05D003706 ORTHO05D004487 5.5e-60 234.6 168 69.6
PSO063G5263 Papaver somniferum HOM05D003706 ORTHO05D004487 5.5e-60 234.6 158 70.9
PSO782G4370 Papaver somniferum HOM05D003706 ORTHO05D004487 5.5e-60 234.6 158 71.5
Phvul.002G000300 Phaseolus vulgaris HOM05D003706 ORTHO05D004487 5.5e-60 234.6 164 72.6
AUR62007134 Chenopodium quinoa HOM05D003706 ORTHO05D004487 7.1e-60 234.2 159 73.6
Haze_07960 Corylus avellana HOM05D003706 ORTHO05D004487 7.1e-60 234.2 171 71.3
Thhalv10026137m.g Eutrema salsugineum HOM05D003706 ORTHO05D004487 7.1e-60 234.2 163 71.8
Glyma.01G206200 Glycine max HOM05D003706 ORTHO05D004487 7.1e-60 234.2 164 71.3
Aa31LG6G250 Aethionema arabicum HOM05D003706 ORTHO05D004487 1.6e-59 233.0 174 66.7
Ciclev10022039m.g Citrus clementina HOM05D003706 ORTHO05D004487 1.6e-59 233.0 162 70.4
AUR62018878 Chenopodium quinoa HOM05D003706 ORTHO05D004487 2.1e-59 232.6 165 70.9
Atru.chr9.1245 Acer truncatum HOM05D003706 ORTHO05D004487 3.5e-59 231.9 167 68.9
Carub.0007s2389 Capsella rubella HOM05D003706 ORTHO05D004487 3.5e-59 231.9 163 71.8
Ca_21985_v3 Cicer arietinum L. HOM05D003706 ORTHO05D004487 4.6e-59 231.5 166 71.1
Ca_21998_v3 Cicer arietinum L. HOM05D003706 ORTHO05D004487 4.6e-59 231.5 166 71.1
MBI04_g41760_MAGBIO Magnolia biondii HOM05D003706 ORTHO05D004487 6.0e-59 231.1 164 70.1
C01p11160 Brassica napus HOM05D003706 ORTHO05D004487 7.9e-59 230.7 158 72.8
BraA03t14138Z Brassica rapa HOM05D003706 ORTHO05D004487 1.0e-58 230.3 176 67.0
AT4G17510 Arabidopsis thaliana HOM05D003706 ORTHO05D004487 1.3e-58 229.9 163 69.9
VMungo0251G2656 Vigna mungo HOM05D003706 ORTHO05D004487 1.3e-58 229.9 161 73.3
BcaC09g51635 Brassica carinata HOM05D003706 ORTHO05D004487 1.8e-58 229.6 158 72.8
BolC1t01081H Brassica oleracea HOM05D003706 ORTHO05D004487 1.8e-58 229.6 158 72.8
Eucgr.E00375 Eucalyptus grandis HOM05D003706 ORTHO05D004487 2.3e-58 229.2 152 73.7
Medtr4g100360 Medicago truncatula HOM05D003706 ORTHO05D004487 2.3e-58 229.2 156 73.1
Psat4g074200 Pisum sativum HOM05D003706 ORTHO05D004487 2.3e-58 229.2 164 71.3
BcaNung00085 Brassica carinata HOM05D003706 ORTHO05D004487 3.0e-58 228.8 158 72.8
Sp7g16650 Schrenkiella parvula HOM05D003706 ORTHO05D004487 3.0e-58 228.8 163 71.8
TPR.G10445 Trifolium pratense HOM05D003706 ORTHO05D004487 3.0e-58 228.8 152 75.0
BcaNung03459 Brassica carinata HOM05D003706 ORTHO05D004487 3.9e-58 228.4 176 66.5
CARHR224210 Cardamine hirsuta HOM05D003706 ORTHO05D004487 3.9e-58 228.4 163 69.9
A01p09590 Brassica napus HOM05D003706 ORTHO05D004487 5.1e-58 228.0 158 72.2
A03p50490 Brassica napus HOM05D003706 ORTHO05D004487 5.1e-58 228.0 176 65.9
BraA01t00901Z Brassica rapa HOM05D003706 ORTHO05D004487 5.1e-58 228.0 158 72.2
C07p48810 Brassica napus HOM05D003706 ORTHO05D004487 6.7e-58 227.6 176 66.5
BolC7t45389H Brassica oleracea HOM05D003706 ORTHO05D004487 6.7e-58 227.6 176 66.5
Aqoxy3G02726 Aquilegia oxysepala HOM05D003706 ORTHO05D004487 1.1e-57 226.9 153 71.9
AL7G37120 Arabidopsis lyrata HOM05D003706 ORTHO05D004487 1.1e-57 226.9 174 66.1
Hund14510 Selenicereus undatus HOM05D003706 ORTHO05D004487 1.5e-57 226.5 170 69.4
VMungo1215G2603 Vigna mungo HOM05D003706 ORTHO05D004487 1.9e-57 226.1 173 65.9
DCAR_004606 Daucus carota HOM05D003706 ORTHO05D004487 3.3e-57 225.3 162 70.4
Lalb_Chr00c54g0413631 Lupinus albus HOM05D003706 ORTHO05D004487 5.7e-57 224.6 212 58.0
AL7G37110 Arabidopsis lyrata HOM05D003706 ORTHO05D004487 1.3e-56 223.4 177 66.1
Carub.0007s2388 Capsella rubella HOM05D003706 ORTHO05D004487 2.1e-56 222.6 171 68.4
vmacro00024 Vaccinium macrocarpon HOM05D003706 ORTHO05D004487 3.7e-56 221.9 210 56.7
CiPaw.12G048600 Carya illinoinensis HOM05D003706 ORTHO05D004487 9.0e-55 217.2 150 74.7
Ah.07g198590 Amaranthus hybridus HOM05D003706 ORTHO05D004487 1.2e-54 216.9 159 66.7
CDE11G0530 Ceratophyllum demersum HOM05D003706 ORTHO05D004487 5.9e-54 214.5 154 66.9
HPP92_002099 Vanilla planifolia HOM05D003706 ORTHO05D004487 1.0e-53 213.8 166 64.5
unitig_0.g1053 Utricularia gibba HOM05D003706 ORTHO05D004487 5.0e-53 211.5 164 65.2
arahy.Tifrunner.gnm1.ann1.FUBR3I Arachis hypogaea HOM05D003706 ORTHO05D004487 8.4e-53 210.7 149 68.5
Lalb_Chr00c24g0407441 Lupinus albus HOM05D003706 ORTHO05D004487 1.4e-52 209.9 147 72.1
Rhsim02G0172600 Rhododendron simsii HOM05D003480 ORTHO05D004487 1.2e-51 206.8 139 72.7
Cfa012680 Carpinus fangiana HOM05D003706 ORTHO05D004487 2.7e-51 205.7 166 66.3
Sc22g0001060 Simmondsia chinensis HOM05D003706 ORTHO05D004487 6.1e-51 204.5 153 69.9
Nn1g00853 Nelumbo nucifera HOM05D003706 ORTHO05D004487 7.9e-51 204.1 141 73.0
Zm00001eb427920 Zea mays HOM05D003706 ORTHO05D004487 1.0e-50 203.8 159 62.3
Os02g0654500 Oryza sativa ssp. japonica HOM05D003706 ORTHO05D004487 6.7e-50 201.1 162 62.3
CsaV3_3G002450 Cucumis sativus L. HOM05D003706 ORTHO05D004487 1.1e-49 200.3 137 73.7
Zm00001eb186330 Zea mays HOM05D003706 ORTHO05D004487 1.5e-49 199.9 159 63.5
MELO3C013914.2 Cucumis melo HOM05D003706 ORTHO05D004487 3.3e-49 198.7 132 74.2
ATR0057G038 Amborella trichopoda HOM05D003706 ORTHO05D004487 3.7e-48 195.3 146 66.4
TPR.G4685 Trifolium pratense HOM05D003706 ORTHO05D004487 3.7e-48 195.3 138 71.7
Zm00001eb249260 Zea mays HOM05D003706 ORTHO05D004487 1.1e-47 193.7 168 57.1
VMungo0251G2614 Vigna mungo HOM05D003706 ORTHO05D006202 9.0e-47 190.7 136 69.9
HPP92_014688 Vanilla planifolia HOM05D003706 ORTHO05D004487 2.0e-46 189.5 160 60.6
Mapoly0021s0071 Marchantia polymorpha HOM05D003706 ORTHO05D004487 7.7e-46 187.6 169 60.4
AagrBONN_evm.TU.Sc2ySwM_368.2205 Anthoceros agrestis HOM05D003706 ORTHO05D004487 8.5e-45 184.1 176 55.1
Pp3c3_8410 Physcomitrium patens HOM05D003706 ORTHO05D004487 1.6e-43 179.9 155 58.1
SMO364G0877 Selaginella moellendorffii HOM05D003706 ORTHO05D004487 3.9e-42 175.3 165 56.4
BcaC06g33562 Brassica carinata HOM05D003706 ORTHO05D004487 6.3e-40 167.9 119 70.6
CBR_g30854 Chara braunii HOM05D003706 ORTHO05D004487 6.3e-40 167.9 156 55.1
Zm00001eb433120 Zea mays HOM05D003706 ORTHO05D004487 5.3e-39 164.9 148 55.4
Ciclev10024619m.g Citrus clementina HOM05D003706 ORTHO05D004487 2.5e-36 156.0 111 70.3
SHI07667 Sapria himalayana HOM05D003706 ORTHO05D004487 4.2e-36 155.2 157 54.1
BcaC06g33564 Brassica carinata HOM05D003706 ORTHO05D004487 7.2e-36 154.5 138 60.9
Cc11_g04870 Coffea canephora HOM05D003706 ORTHO05D004487 4.4e-33 145.2 121 65.3
Actinidia02181 Actinidia chinensis HOM05D003706 ORTHO05D004487 5.0e-29 131.7 93 69.9
Cre03.g194250 Chlamydomonas reinhardtii HOM05D003706 ORTHO05D004487 5.0e-29 131.7 175 41.7
MCO01G147 Micromonas commoda HOM05D003706 ORTHO05D004487 3.6e-27 125.6 177 40.1
Sopen08g026630 Solanum pennellii HOM05D003706 ORTHO05D004487 2.3e-26 122.9 66 86.4
TWI15G0745 Tripterygium wilfordii HOM05D003706 ORTHO05D004487 9.7e-25 117.5 68 82.4
Cc01_g05720 Coffea canephora HOM05D003706 ORTHO05D004487 4.8e-24 115.2 82 70.7
arahy.Tifrunner.gnm1.ann1.77EYCF Arachis hypogaea HOM05D003706 ORTHO05D004487 2.7e-22 109.4 69 71.0
MBI04_g33725_MAGBIO Magnolia biondii HOM05D003706 ORTHO05D004487 4.1e-15 85.5 48 75.0
Cc00_g03590 Coffea canephora HOM05D003706 ORTHO05D004487 2.7e-14 82.8 80 56.2
Zm00001eb146790 Zea mays HOM05D005629 ORTHO05D003607 3.5e-14 82.4 78 59.0
Zm00001eb389020 Zea mays HOM05D003706 ORTHO05D004487 3.5e-14 82.4 78 59.0
Os04g0667500 Oryza sativa ssp. japonica HOM05D003706 ORTHO05D004487 5.9e-14 81.6 62 59.7
RcHm_v2.0_Chr7g0214021 Rosa chinensis HOM05D003706 ORTHO05D004487 1.3e-13 80.5 59 69.5
Zm00001eb296140 Zea mays HOM05D003706 ORTHO05D004487 3.8e-13 79.0 78 57.7
Zm00001eb389030 Zea mays HOM05D003706 ORTHO05D004487 1.1e-12 77.4 72 59.7
arahy.Tifrunner.gnm1.ann1.CH87W6 Arachis hypogaea HOM05D003706 ORTHO05D004487 3.2e-12 75.9 96 46.9
TAR375G0973 Trochodendron aralioides HOM05D003706 ORTHO05D004487 5.5e-12 75.1 44 79.5
PRCOL_00002923 Prasinoderma coloniale HOM05D003706 ORTHO05D004487 9.5e-12 74.3 179 32.4
C07p48160 Brassica napus HOM05D003706 ORTHO05D004487 2.7e-11 72.8 96 46.9
Sopen08g026640 Solanum pennellii HOM05D003706 ORTHO05D004487 1.1e-07 60.8 40 75.0
Os04g0546400 Oryza sativa ssp. japonica HOM05D003706 ORTHO05D004487 3.1e-07 59.3 59 54.2
arahy.Tifrunner.gnm1.ann1.5G37N1 Arachis hypogaea HOM05D003706 ORTHO05D031576 1.6e-06 57.0 28 92.9
VMungo0331G1368 Vigna mungo HOM05D003706 ORTHO05D031576 1.6e-06 57.0 27 92.6
GSVIVG01005551001 Vitis vinifera HOM05D003706 ORTHO05D031576 2.0e-06 56.6 27 92.6
SEGI_34669 Sequoiadendron giganteum HOM05D003706 ORTHO05D004487 4.5e-06 55.5 61 50.8


User provided reference genes

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