Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0009266g0010 Nicotiana tabacum HOM05D012161 ORTHO05D002431 1.1e-173 613.2 304 100.0
Nitab4.5_0006764g0020 Nicotiana tabacum HOM05D012161 ORTHO05D002431 1.2e-116 423.7 304 74.3
Sopen11g024730 Solanum pennellii HOM05D012161 ORTHO05D002431 2.4e-101 372.9 311 64.3
Solyc11g064930.3 Solanum lycopersicum HOM05D012161 ORTHO05D002431 4.2e-69 265.8 250 59.6
CAN.G468.5 Capsicum annuum HOM05D012161 ORTHO05D002431 8.7e-59 231.5 158 74.7
Peaxi162Scf00004g00434 Petunia axillaris HOM05D012161 ORTHO05D002431 1.8e-48 197.2 235 52.8
Peaxi162Scf00272g00824 Petunia axillaris HOM05D023424 ORTHO05D002431 3.2e-13 80.1 141 41.1
Psat2g020800 Pisum sativum HOM05D009394 ORTHO05D002431 2.1e-12 77.4 163 35.0
Gohir.D08G020400 Gossypium hirsutum HOM05D009394 ORTHO05D002431 4.7e-12 76.3 313 25.2
Oeu032569.1 Olea europaea HOM05D002917 ORTHO05D002431 1.4e-11 74.7 56 64.3
Sp6g24940 Schrenkiella parvula HOM05D002917 ORTHO05D002431 3.0e-11 73.6 56 64.3
Potri.009G067600 Populus trichocarpa HOM05D002917 ORTHO05D002431 6.7e-11 72.4 61 59.0
PGR119G1093 Punica granatum HOM05D002917 ORTHO05D002431 1.1e-10 71.6 85 49.4
BraA10t44095Z Brassica rapa HOM05D006224 ORTHO05D007691 2.0e-10 70.9 57 61.4
MBI19_g20793_MAGBIO Magnolia biondii HOM05D002917 ORTHO05D002431 2.0e-10 70.9 56 55.4
Rhsim13G0207800 Rhododendron simsii HOM05D002917 ORTHO05D002431 2.0e-10 70.9 69 47.8
A10p20240 Brassica napus HOM05D006224 ORTHO05D007691 3.3e-10 70.1 52 65.4
C09p56830 Brassica napus HOM05D002917 ORTHO05D002431 3.3e-10 70.1 52 65.4
BolC9t58537H Brassica oleracea HOM05D002917 ORTHO05D002431 3.3e-10 70.1 52 65.4
CSS0017424 Camellia sinensis var. sinensis HOM05D002917 ORTHO05D002431 3.3e-10 70.1 61 54.1
CSS0039673 Camellia sinensis var. sinensis HOM05D002917 ORTHO05D002431 3.3e-10 70.1 61 54.1
Eucgr.J00684 Eucalyptus grandis HOM05D002917 ORTHO05D002431 3.3e-10 70.1 63 54.0
Thhalv10015114m.g Eutrema salsugineum HOM05D002917 ORTHO05D002431 3.3e-10 70.1 52 65.4
Potri.001G273300 Populus trichocarpa HOM05D002917 ORTHO05D002431 3.3e-10 70.1 59 57.6
Sabra09G0050600 Salix brachista HOM05D002917 ORTHO05D002431 4.4e-10 69.7 59 57.6
CSS0010926 Camellia sinensis var. sinensis HOM05D002917 ORTHO05D002431 5.7e-10 69.3 52 59.6
AL6G30970 Arabidopsis lyrata HOM05D002917 ORTHO05D002431 7.5e-10 68.9 56 62.5
Manes.02G136400 Manihot esculenta HOM05D002917 ORTHO05D002431 7.5e-10 68.9 60 53.3
Dinv15024 Davidia involucrata HOM05D002917 ORTHO05D002431 9.7e-10 68.6 71 46.5
Carub.0006s1781 Capsella rubella HOM05D002917 ORTHO05D002431 1.7e-09 67.8 56 60.7
GSVIVG01037326001 Vitis vinifera HOM05D002917 ORTHO05D002431 2.2e-09 67.4 72 47.2
CARHR193450 Cardamine hirsuta HOM05D002917 ORTHO05D002431 3.7e-09 66.6 52 61.5
CiPaw.13G149300 Carya illinoinensis HOM05D002917 ORTHO05D002431 3.7e-09 66.6 58 55.2
Haze_23253 Corylus avellana HOM05D002917 ORTHO05D002431 3.7e-09 66.6 58 55.2
THA.LOC104799140 Tarenaya hassleriana HOM05D012161 ORTHO05D002431 4.8e-09 66.2 50 60.0
Ciclev10018107m.g Citrus clementina HOM05D002917 ORTHO05D002431 6.3e-09 65.9 58 55.2
AT5G19473 Arabidopsis thaliana HOM05D002917 ORTHO05D002431 8.2e-09 65.5 55 60.0
TPR.G24378 Trifolium pratense HOM05D012161 ORTHO05D002431 1.4e-08 64.7 166 34.9
Nn7g36760 Nelumbo nucifera HOM05D002917 ORTHO05D002431 1.8e-08 64.3 66 48.5
QL01p016834 Quercus lobata HOM05D012161 ORTHO05D002431 1.8e-08 64.3 53 60.4
BcaB01g04859 Brassica carinata HOM05D002917 ORTHO05D002431 4.1e-08 63.2 55 58.2
BcaB01g05147 Brassica carinata HOM05D002917 ORTHO05D002431 4.1e-08 63.2 55 58.2
A03p09490 Brassica napus HOM05D002917 ORTHO05D002431 4.1e-08 63.2 55 58.2
C03p11070 Brassica napus HOM05D002917 ORTHO05D002431 4.1e-08 63.2 55 58.2
BolC3t13577H Brassica oleracea HOM05D002917 ORTHO05D002431 4.1e-08 63.2 55 58.2
BraA03t10267Z Brassica rapa HOM05D002917 ORTHO05D002431 4.1e-08 63.2 55 58.2
Gohir.A08G010300 Gossypium hirsutum HOM05D009394 ORTHO05D002431 5.3e-08 62.8 310 23.9
Gohir.A09G110600 Gossypium hirsutum HOM05D009394 ORTHO05D002431 5.3e-08 62.8 51 56.9
Gohir.D09G107100 Gossypium hirsutum HOM05D009394 ORTHO05D002431 5.3e-08 62.8 51 56.9
Gorai.006G124700 Gossypium raimondii HOM05D009394 ORTHO05D002431 5.3e-08 62.8 51 56.9
Gorai.004G015000 Gossypium raimondii HOM05D009394 ORTHO05D002431 7.0e-08 62.4 38 68.4
Aqoxy1G00393 Aquilegia oxysepala HOM05D002917 ORTHO05D002431 9.1e-08 62.0 73 41.1
COL.COLO4_24485 Corchorus olitorius HOM05D009394 ORTHO05D002431 9.1e-08 62.0 53 60.4
Prupe.4G264200 Prunus persica HOM05D002917 ORTHO05D002431 9.1e-08 62.0 62 50.0
Cpa.g.sc34.178 Carica papaya HOM05D009394 ORTHO05D002431 1.2e-07 61.6 62 53.2
Glyma.15G055400 Glycine max HOM05D009394 ORTHO05D002431 1.2e-07 61.6 55 54.5
Lalb_Chr04g0249281 Lupinus albus HOM05D009394 ORTHO05D002431 1.2e-07 61.6 37 73.0
Phvul.006G204500 Phaseolus vulgaris HOM05D009394 ORTHO05D002431 2.0e-07 60.8 38 63.2
SGA_v2.0_scaffold310G48220 Striga asiatica HOM05D014772 ORTHO05D019381 2.0e-07 60.8 57 61.4
Duzib170G0372 Durio zibethinus HOM05D006044 ORTHO05D007653 2.7e-07 60.5 80 45.0
Sc09g0001070 Simmondsia chinensis HOM05D009394 ORTHO05D002431 2.7e-07 60.5 58 51.7
TPR.G16410 Trifolium pratense HOM05D009394 ORTHO05D002431 2.7e-07 60.5 38 68.4
Medtr5g089290 Medicago truncatula HOM05D009394 ORTHO05D002431 3.5e-07 60.1 51 60.8
Thecc.09G247400 Theobroma cacao HOM05D002917 ORTHO05D002431 3.5e-07 60.1 49 61.2
CsaV3_6G038900 Cucumis sativus L. HOM05D009394 ORTHO05D002431 4.5e-07 59.7 55 52.7
Sabra16G0168400 Salix brachista HOM05D002917 ORTHO05D002431 4.5e-07 59.7 53 52.8
MD03G1164700 Malus domestica HOM05D012161 ORTHO05D002431 5.9e-07 59.3 58 55.2
arahy.Tifrunner.gnm1.ann1.NQ28YP Arachis hypogaea HOM05D009394 ORTHO05D002431 7.7e-07 58.9 37 70.3
arahy.Tifrunner.gnm1.ann1.S8RCCH Arachis hypogaea HOM05D009394 ORTHO05D002431 7.7e-07 58.9 37 70.3
Atru.chr3.2999 Acer truncatum HOM05D002917 ORTHO05D002431 1.3e-06 58.2 50 52.0
Ah.04g159710 Amaranthus hybridus HOM05D002917 ORTHO05D002431 1.3e-06 58.2 50 54.0
LjContig00564g0021896 Lotus japonicus HOM05D009394 ORTHO05D002431 2.2e-06 57.4 66 47.0
Lalb_Chr10g0106201 Lupinus albus HOM05D009394 ORTHO05D002431 2.2e-06 57.4 37 70.3
CANSAT54G1823 Cannabis sativa HOM05D002917 ORTHO05D002431 2.9e-06 57.0 58 50.0
HPP92_001700 Vanilla planifolia HOM05D002917 ORTHO05D002431 5.0e-06 56.2 51 49.0
FAN21G0185 Fragaria x ananassa HOM05D002917 ORTHO05D002431 6.5e-06 55.8 58 51.7
Solyc12g099780.2 Solanum lycopersicum HOM05D023424 ORTHO05D002431 6.5e-06 55.8 75 46.7
Sopen12g034410 Solanum pennellii HOM05D023424 ORTHO05D002431 6.5e-06 55.8 75 46.7
RcHm_v2.0_Chr5g0050361 Rosa chinensis HOM05D012161 ORTHO05D002431 8.5e-06 55.5 63 44.4
PGSC0003DMG400004715 Solanum tuberosum HOM05D023424 ORTHO05D002431 8.5e-06 55.5 75 46.7


User provided reference genes

Program Settings