Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0009218g0020 Nicotiana tabacum HOM05D004374 ORTHO05D005430 4.5e-200 701.0 357 100.0
Peaxi162Scf00088g01332 Petunia axillaris HOM05D004374 ORTHO05D005430 1.0e-138 497.3 316 81.6
Nitab4.5_0005465g0010 Nicotiana tabacum HOM05D004374 ORTHO05D005430 1.3e-133 480.3 306 84.0
Nitab4.5_0002008g0060 Nicotiana tabacum HOM05D004374 ORTHO05D005430 1.3e-127 460.3 289 83.7
Sopen07g003820 Solanum pennellii HOM05D004374 ORTHO05D005430 7.9e-120 434.5 341 69.8
Solyc07g007940.3 Solanum lycopersicum HOM05D004374 ORTHO05D005430 5.1e-119 431.8 341 69.5
CAN.G1315.2 Capsicum annuum HOM05D004374 ORTHO05D005430 2.6e-118 429.5 312 74.4
CAN.G1963.3 Capsicum annuum HOM05D004374 ORTHO05D005430 3.6e-112 409.1 366 63.4
Hma1.2p1_0343F.1_g130960 Hydrangea macrophylla HOM05D004374 ORTHO05D005430 7.5e-94 348.2 312 59.3
Dinv41475 Davidia involucrata HOM05D004374 ORTHO05D005430 1.8e-92 343.6 302 60.3
Rhsim01G0061800 Rhododendron simsii HOM05D004374 ORTHO05D005430 4.5e-91 339.0 296 59.5
Hma1.2p1_1220F.1_g268070 Hydrangea macrophylla HOM05D004374 ORTHO05D005430 5.9e-91 338.6 312 58.0
Migut.K00426 Erythranthe guttata HOM05D004374 ORTHO05D005430 3.2e-89 332.8 305 57.7
TAR626G1960 Trochodendron aralioides HOM05D004374 ORTHO05D005430 9.5e-89 331.3 305 56.7
SalBow1G4424 Salvia bowleyana HOM05D004374 ORTHO05D005430 2.1e-88 330.1 330 56.4
Cc06_g08080 Coffea canephora HOM05D004374 ORTHO05D005430 8.0e-88 328.2 266 62.0
MSTRG.26430 Avicennia marina HOM05D004374 ORTHO05D005430 3.0e-87 326.2 332 51.8
PGR042G2992 Punica granatum HOM05D004374 ORTHO05D005430 2.0e-83 313.5 315 53.0
Dinv36480 Davidia involucrata HOM05D004374 ORTHO05D005430 2.7e-83 313.2 266 60.9
Nn8g39541 Nelumbo nucifera HOM05D004374 ORTHO05D005430 2.7e-83 313.2 307 54.1
GSVIVG01015588001 Vitis vinifera HOM05D004374 ORTHO05D005430 5.9e-83 312.0 304 53.9
QL02p089838 Quercus lobata HOM05D004374 ORTHO05D005430 1.0e-82 311.2 305 53.4
PGSC0003DMG400030909 Solanum tuberosum HOM05D004374 ORTHO05D005430 1.0e-82 311.2 316 57.6
Ciclev10002076m.g Citrus clementina HOM05D004374 ORTHO05D005430 2.3e-82 310.1 304 53.6
Potri.006G065800 Populus trichocarpa HOM05D004374 ORTHO05D005430 3.8e-82 309.3 263 57.8
Ciclev10032301m.g Citrus clementina HOM05D004374 ORTHO05D005430 5.0e-82 308.9 304 52.6
Nitab4.5_0000245g0210 Nicotiana tabacum HOM05D004374 ORTHO05D005430 6.6e-82 308.5 190 88.4
vmacro15378 Vaccinium macrocarpon HOM05D004374 ORTHO05D005430 4.3e-81 305.8 380 46.8
TWI34G0112 Tripterygium wilfordii HOM05D004374 ORTHO05D005430 2.8e-80 303.1 304 51.6
Prupe.1G493600 Prunus persica HOM05D004374 ORTHO05D005430 8.0e-80 301.6 305 51.1
Ca_06940_v3 Cicer arietinum L. HOM05D004374 ORTHO05D005430 3.0e-79 299.7 295 53.2
TPR.G24785 Trifolium pratense HOM05D004374 ORTHO05D005430 1.2e-78 297.7 263 56.7
ClCG11G003340 Citrullus lanatus HOM05D004374 ORTHO05D005430 2.0e-78 297.0 304 51.0
TAR383G0672 Trochodendron aralioides HOM05D004374 ORTHO05D005430 2.0e-78 297.0 277 54.9
TWI34G1386 Tripterygium wilfordii HOM05D004374 ORTHO05D005430 3.4e-78 296.2 306 51.3
HanXRQChr06g0168691 Helianthus annuus HOM05D004374 ORTHO05D005430 4.4e-78 295.8 308 51.0
Psat4g038960 Pisum sativum HOM05D004374 ORTHO05D005430 4.4e-78 295.8 266 56.4
SGA_v2.0_scaffold138G35279 Striga asiatica HOM05D004374 ORTHO05D005430 4.4e-78 295.8 321 50.5
Aqoxy4G00722 Aquilegia oxysepala HOM05D004374 ORTHO05D005430 5.7e-78 295.4 306 50.3
Sabra06G0048000 Salix brachista HOM05D004374 ORTHO05D005430 7.5e-78 295.0 322 49.7
Manes.06G047300 Manihot esculenta HOM05D004374 ORTHO05D005430 9.8e-78 294.7 309 49.8
Cfa008808 Carpinus fangiana HOM05D004374 ORTHO05D005430 1.3e-77 294.3 265 54.7
DCAR_017779 Daucus carota HOM05D004374 ORTHO05D005430 1.3e-77 294.3 290 51.7
Glyma.13G159900 Glycine max HOM05D004374 ORTHO05D005430 2.2e-77 293.5 263 56.3
Phvul.003G168700 Phaseolus vulgaris HOM05D004374 ORTHO05D005430 2.2e-77 293.5 300 52.3
SGA_v2.0_scaffold154G37188 Striga asiatica HOM05D004374 ORTHO05D005430 2.2e-77 293.5 263 54.4
Medtr4g115320 Medicago truncatula HOM05D004374 ORTHO05D005430 2.9e-77 293.1 265 56.2
Atru.chr12.84 Acer truncatum HOM05D004374 ORTHO05D005430 6.4e-77 292.0 308 49.7
arahy.Tifrunner.gnm1.ann1.QKGT17 Arachis hypogaea HOM05D004374 ORTHO05D005430 1.4e-76 290.8 295 51.5
arahy.Tifrunner.gnm1.ann1.RD7K84 Arachis hypogaea HOM05D004374 ORTHO05D005430 1.4e-76 290.8 295 51.2
Lalb_Chr13g0301591 Lupinus albus HOM05D004374 ORTHO05D005430 2.4e-76 290.0 295 50.8
MD05G1013300 Malus domestica HOM05D004374 ORTHO05D005430 7.0e-76 288.5 304 50.0
Thecc.09G131900 Theobroma cacao HOM05D004374 ORTHO05D005430 1.2e-75 287.7 291 51.2
CANSAT11G1308 Cannabis sativa HOM05D004374 ORTHO05D005430 2.0e-75 287.0 304 49.3
Sed0026824 Sechium edule HOM05D004374 ORTHO05D005430 2.0e-75 287.0 308 49.7
CsaV3_2G003190 Cucumis sativus L. HOM05D002754 ORTHO05D003271 4.6e-75 285.8 304 49.0
MELO3C004466.2 Cucumis melo HOM05D004374 ORTHO05D005430 2.3e-74 283.5 304 49.3
Duzib168G1544 Durio zibethinus HOM05D004374 ORTHO05D005430 3.9e-74 282.7 289 51.6
Cpa.g.sc46.39 Carica papaya HOM05D004374 ORTHO05D005430 8.6e-74 281.6 305 51.1
unitig_0.g2039 Utricularia gibba HOM05D004374 ORTHO05D005430 1.5e-73 280.8 365 43.0
ECA240G2062 Erigeron canadensis HOM05D004374 ORTHO05D005430 4.3e-73 279.3 293 50.2
Lalb_Chr12g0197301 Lupinus albus HOM05D004374 ORTHO05D005430 7.3e-73 278.5 299 49.5
Sc18g0000370 Simmondsia chinensis HOM05D004374 ORTHO05D005430 1.2e-72 277.7 298 49.0
Lj4g0025213 Lotus japonicus HOM05D004374 ORTHO05D005430 1.6e-72 277.3 297 50.2
Lsat_1_v5_gn_7_43761 Lactuca sativa HOM05D004374 ORTHO05D005430 1.0e-71 274.6 310 46.1
Gohir.D05G015500 Gossypium hirsutum HOM05D004374 ORTHO05D005430 1.4e-71 274.2 266 52.3
vmacro07719 Vaccinium macrocarpon HOM05D004374 ORTHO05D005430 2.3e-71 273.5 436 39.0
Gorai.009G015600 Gossypium raimondii HOM05D004374 ORTHO05D005430 3.1e-71 273.1 266 51.9
Eucgr.C01384 Eucalyptus grandis HOM05D004374 ORTHO05D005430 5.2e-71 272.3 281 49.1
VMungo1215G2312 Vigna mungo HOM05D004374 ORTHO05D005430 5.2e-71 272.3 248 56.0
AUR62008844 Chenopodium quinoa HOM05D004374 ORTHO05D005430 1.1e-68 264.6 263 51.3
AUR62011174 Chenopodium quinoa HOM05D004374 ORTHO05D005430 1.9e-68 263.8 298 48.0
PGSC0003DMG400020805 Solanum tuberosum HOM05D004374 ORTHO05D005430 2.0e-67 260.4 241 64.3
Lj3g0009396 Lotus japonicus HOM05D004374 ORTHO05D005430 2.7e-67 260.0 275 49.5
Medtr3g113180 Medicago truncatula HOM05D004374 ORTHO05D005430 1.0e-66 258.1 263 51.7
AUR62025401 Chenopodium quinoa HOM05D004374 ORTHO05D005430 1.7e-66 257.3 262 50.4
MBI04_g39649_MAGBIO Magnolia biondii HOM05D004374 ORTHO05D005430 3.9e-66 256.1 286 49.3
Lj3g0021552 Lotus japonicus HOM05D004374 ORTHO05D005430 6.6e-66 255.4 269 49.4
Haze_11824 Corylus avellana HOM05D004374 ORTHO05D005430 1.1e-65 254.6 305 46.9
Thhalv10010555m.g Eutrema salsugineum HOM05D004374 ORTHO05D005430 7.3e-65 251.9 288 45.8
HPP92_020472 Vanilla planifolia HOM05D004374 ORTHO05D005430 9.5e-65 251.5 285 47.4
THA.LOC104826552 Tarenaya hassleriana HOM05D004374 ORTHO05D005430 1.6e-64 250.8 306 45.4
HPP92_026160 Vanilla planifolia HOM05D004374 ORTHO05D005430 2.1e-64 250.4 285 47.4
Carub.0005s1981 Capsella rubella HOM05D004374 ORTHO05D005430 3.6e-64 249.6 300 44.7
Sp5g09070 Schrenkiella parvula HOM05D004374 ORTHO05D005430 3.6e-64 249.6 257 49.0
Zm00001eb288690 Zea mays HOM05D004374 ORTHO05D005430 6.2e-64 248.8 264 45.8
BolC6t37295H Brassica oleracea HOM05D004374 ORTHO05D005430 1.8e-63 247.3 304 44.4
AT3G53270 Arabidopsis thaliana HOM05D004374 ORTHO05D005430 2.3e-63 246.9 261 47.5
A07p21500 Brassica napus HOM05D004374 ORTHO05D005430 2.3e-63 246.9 294 44.2
CiPaw.05G118700 Carya illinoinensis HOM05D004374 ORTHO05D005430 3.1e-63 246.5 181 64.6
Zm00001eb030790 Zea mays HOM05D004374 ORTHO05D005430 3.1e-63 246.5 264 45.5
Zm00001eb030830 Zea mays HOM05D004374 ORTHO05D005430 3.1e-63 246.5 264 45.5
EL10Ac8g18718 Beta vulgaris HOM05D004374 ORTHO05D005430 5.2e-63 245.7 297 45.1
C06p21110 Brassica napus HOM05D004374 ORTHO05D005430 5.2e-63 245.7 294 44.6
AL5G21410 Arabidopsis lyrata HOM05D004374 ORTHO05D005430 6.8e-63 245.4 300 43.7
BraA07t29837Z Brassica rapa HOM05D004374 ORTHO05D005430 6.8e-63 245.4 275 44.7
FAN05G4736 Fragaria x ananassa HOM05D004374 ORTHO05D005430 8.9e-63 245.0 308 45.1
RcHm_v2.0_Chr2g0138971 Rosa chinensis HOM05D004374 ORTHO05D005430 8.9e-63 245.0 267 47.2
FAN14G1328 Fragaria x ananassa HOM05D004374 ORTHO05D005430 7.5e-62 241.9 267 47.6
ATR0307G110 Amborella trichopoda HOM05D004374 ORTHO05D005430 9.9e-62 241.5 264 47.3
BcaB02g07796 Brassica carinata HOM05D004374 ORTHO05D005430 4.9e-61 239.2 303 42.2
FAN02G2909 Fragaria x ananassa HOM05D004374 ORTHO05D005430 4.9e-61 239.2 267 47.2
FvH4_6g31820 Fragaria vesca HOM05D004374 ORTHO05D005430 1.4e-60 237.7 311 43.4
PSO478G4198 Papaver somniferum HOM05D004374 ORTHO05D005430 1.4e-60 237.7 206 54.4
AL5G34180 Arabidopsis lyrata HOM05D004374 ORTHO05D005430 5.4e-60 235.7 319 41.1
Aa31LG9G14420 Aethionema arabicum HOM05D004374 ORTHO05D005430 3.5e-59 233.0 279 44.4
FAN09G4040 Fragaria x ananassa HOM05D004374 ORTHO05D005430 2.3e-58 230.3 312 43.3
Sp1g13120 Schrenkiella parvula HOM05D004374 ORTHO05D005430 1.1e-57 228.0 311 41.5
COL.COLO4_35152 Corchorus olitorius HOM05D004374 ORTHO05D005430 2.5e-57 226.9 291 44.0
Lj7A483G16 Lonicera japonica HOM05D004374 ORTHO05D005430 3.3e-57 226.5 199 59.3
CAN.G778.6 Capsicum annuum HOM05D004374 ORTHO05D005430 8.1e-56 221.9 220 59.5
Lj5A680G20 Lonicera japonica HOM05D004374 ORTHO05D005430 1.5e-54 217.6 174 61.5
Os10g0493800 Oryza sativa ssp. japonica HOM05D004374 ORTHO05D005430 1.5e-54 217.6 278 39.9
Thhalv10000991m.g Eutrema salsugineum HOM05D004374 ORTHO05D005430 7.6e-54 215.3 296 42.2
Nitab4.5_0000245g0220 Nicotiana tabacum HOM05D004374 ORTHO05D005430 3.8e-53 213.0 124 83.9
PSO017G1812 Papaver somniferum HOM05D004374 ORTHO05D005430 1.5e-49 201.1 258 44.2
Carub.0001s3232 Capsella rubella HOM05D004374 ORTHO05D005430 1.2e-48 198.0 292 40.1
arahy.Tifrunner.gnm1.ann1.9N6VAH Arachis hypogaea HOM05D004374 ORTHO05D005430 2.8e-48 196.8 236 44.9
Gohir.A05G014400 Gossypium hirsutum HOM05D004374 ORTHO05D005430 6.2e-48 195.7 222 47.3
SEGI_33846 Sequoiadendron giganteum HOM05D004374 ORTHO05D005430 6.2e-48 195.7 268 40.3
PSO384G0227 Papaver somniferum HOM05D004374 ORTHO05D005430 6.9e-47 192.2 209 47.4
Hund26613 Selenicereus undatus HOM05D004374 ORTHO05D005430 7.1e-44 182.2 316 36.7
Oeu032454.1 Olea europaea HOM05D004374 ORTHO05D005430 2.5e-41 173.7 222 48.2
CSS0004446 Camellia sinensis var. sinensis HOM05D004374 ORTHO05D005430 5.6e-41 172.6 184 50.5
Potri.004G126720 Populus trichocarpa HOM05D004374 ORTHO05D005430 1.3e-40 171.4 132 61.4
Actinidia40498 Actinidia chinensis HOM05D004374 ORTHO05D005430 2.8e-40 170.2 196 47.4
Oeu032455.1 Olea europaea HOM05D004374 ORTHO05D005430 1.4e-39 167.9 103 73.8
AUR62013310 Chenopodium quinoa HOM05D004374 ORTHO05D005430 1.2e-38 164.9 205 43.9
Actinidia21954 Actinidia chinensis HOM05D004374 ORTHO05D005430 1.2e-35 154.8 136 55.9
Potri.004G126760 Populus trichocarpa HOM05D004374 ORTHO05D005430 6.0e-35 152.5 181 45.9
Hund26538 Selenicereus undatus HOM05D004374 ORTHO05D005430 8.1e-32 142.1 397 29.2
arahy.Tifrunner.gnm1.ann1.8FF2M6 Arachis hypogaea HOM05D004374 ORTHO05D005430 1.5e-30 137.9 194 40.2
Ah.09g224840 Amaranthus hybridus HOM05D004374 ORTHO05D005430 3.4e-30 136.7 338 28.7
SEGI_36985 Sequoiadendron giganteum HOM05D004374 ORTHO05D005430 3.4e-30 136.7 291 32.0
CSS0020843 Camellia sinensis var. sinensis HOM05D004374 ORTHO05D005430 5.1e-26 122.9 289 32.2
Mapoly0001s0311 Marchantia polymorpha HOM05D004374 ORTHO05D005430 3.3e-25 120.2 208 34.1
CDE06G2323 Ceratophyllum demersum HOM05D004374 ORTHO05D005430 7.4e-25 119.0 258 29.5
CARHR163170 Cardamine hirsuta HOM05D004374 ORTHO05D005430 1.8e-23 114.4 167 38.9
Pp3c16_3150 Physcomitrium patens HOM05D004374 ORTHO05D005430 6.9e-23 112.5 310 27.7
AagrBONN_evm.TU.Sc2ySwM_228.3625 Anthoceros agrestis HOM05D004374 ORTHO05D005430 1.4e-20 104.8 262 27.5
Nn8g39548 Nelumbo nucifera HOM05D004374 ORTHO05D005430 5.5e-20 102.8 129 47.3
Actinidia21955 Actinidia chinensis HOM05D004374 ORTHO05D005430 1.6e-19 101.3 86 59.3
BcaC07g39690 Brassica carinata HOM05D004374 ORTHO05D005430 8.7e-18 95.5 141 41.1
C08p28500 Brassica napus HOM05D000209 ORTHO05D024195 3.1e-15 87.0 141 36.9
BolC8t50457H Brassica oleracea HOM05D000209 ORTHO05D024195 3.1e-15 87.0 141 36.9
CSS0024212 Camellia sinensis var. sinensis HOM05D004374 ORTHO05D005430 9.0e-15 85.5 73 61.6
TWI09G0688 Tripterygium wilfordii HOM05D004374 ORTHO05D005430 9.0e-15 85.5 262 26.7
Lj5C680T4 Lonicera japonica HOM05D004374 ORTHO05D005430 5.9e-14 82.8 131 41.2
C04p05170 Brassica napus HOM05D000111 ORTHO05D000134 1.4e-12 78.2 147 30.6
SMO358G0132 Selaginella moellendorffii HOM05D004374 ORTHO05D005430 2.5e-12 77.4 197 29.9
SHI22473 Sapria himalayana HOM05D004374 ORTHO05D005430 3.2e-12 77.0 66 56.1
CSS0046554 Camellia sinensis var. sinensis HOM05D004374 ORTHO05D005430 7.2e-12 75.9 59 62.7
CBR_g54313 Chara braunii HOM05D004374 ORTHO05D005430 2.1e-11 74.3 132 30.3
BcaB07g32803 Brassica carinata HOM05D000209 ORTHO05D000129 7.9e-11 72.4 59 55.9
CARHR163160 Cardamine hirsuta HOM05D004374 ORTHO05D005430 5.7e-09 66.2 96 37.5
SHI22474 Sapria himalayana HOM05D004374 ORTHO05D005430 4.8e-08 63.2 40 72.5
A04p15700 Brassica napus HOM05D004374 ORTHO05D040369 7.7e-06 55.8 58 51.7


User provided reference genes

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