Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0009103g0030 Nicotiana tabacum HOM05D004087 ORTHO05D004787 9.2e-114 413.7 226 100.0
Nitab4.5_0000772g0090 Nicotiana tabacum HOM05D004087 ORTHO05D004787 1.3e-80 303.5 227 80.2
PGSC0003DMG400025835 Solanum tuberosum HOM05D004087 ORTHO05D004787 3.6e-70 268.9 228 73.7
Sopen01g049120 Solanum pennellii HOM05D004087 ORTHO05D004787 1.5e-68 263.5 228 74.1
Solyc01g106810.4 Solanum lycopersicum HOM05D004087 ORTHO05D004787 2.9e-67 259.2 228 73.2
Peaxi162Scf00016g03121 Petunia axillaris HOM05D004087 ORTHO05D004787 7.6e-60 234.6 223 67.3
CSS0031122 Camellia sinensis var. sinensis HOM05D004087 ORTHO05D004787 5.5e-42 175.3 209 58.4
GSVIVG01037047001 Vitis vinifera HOM05D004087 ORTHO05D004787 6.1e-41 171.8 204 56.9
Eucgr.G01187 Eucalyptus grandis HOM05D004087 ORTHO05D004787 1.8e-40 170.2 186 54.8
Atru.chr5.2274 Acer truncatum HOM05D004087 ORTHO05D004787 1.5e-39 167.2 216 54.6
Actinidia00355 Actinidia chinensis HOM05D004087 ORTHO05D004787 4.3e-39 165.6 208 54.8
TAR628G1056 Trochodendron aralioides HOM05D000194 ORTHO05D000069 4.3e-39 165.6 211 53.1
PSO170G3120 Papaver somniferum HOM05D004087 ORTHO05D004787 1.3e-38 164.1 214 50.9
Hma1.2p1_0661F.1_g198070 Hydrangea macrophylla HOM05D004087 ORTHO05D004787 1.7e-38 163.7 210 57.1
PSO017G3065 Papaver somniferum HOM05D004087 ORTHO05D004787 1.7e-38 163.7 214 47.7
Dinv09536 Davidia involucrata HOM05D004087 ORTHO05D004787 1.2e-36 157.5 221 52.0
Lsat_1_v5_gn_7_84781 Lactuca sativa HOM05D004087 ORTHO05D004787 2.6e-36 156.4 189 55.6
Thecc.02G120300 Theobroma cacao HOM05D004087 ORTHO05D004787 3.4e-36 156.0 187 54.0
CiPaw.05G021000 Carya illinoinensis HOM05D004087 ORTHO05D004787 4.5e-36 155.6 211 52.1
FAN27G0771 Fragaria x ananassa HOM05D004087 ORTHO05D004787 4.5e-36 155.6 209 50.7
Duzib132G0587 Durio zibethinus HOM05D004087 ORTHO05D004787 5.9e-36 155.2 187 54.5
CANSAT25G1673 Cannabis sativa HOM05D004087 ORTHO05D004787 1.3e-35 154.1 211 53.6
Ciclev10029333m.g Citrus clementina HOM05D004087 ORTHO05D004787 1.3e-35 154.1 200 54.0
FvH4_2g03150 Fragaria vesca HOM05D004087 ORTHO05D004787 1.3e-35 154.1 223 49.3
ECA236G0105 Erigeron canadensis HOM05D004087 ORTHO05D004787 1.7e-35 153.7 190 54.7
Cfa004696 Carpinus fangiana HOM05D004087 ORTHO05D004787 2.2e-35 153.3 213 49.8
ClCG02G007130 Citrullus lanatus HOM05D004087 ORTHO05D004787 2.2e-35 153.3 191 55.5
COL.COLO4_32481 Corchorus olitorius HOM05D004087 ORTHO05D004787 2.9e-35 152.9 181 55.2
Prupe.8G150800 Prunus persica HOM05D004087 ORTHO05D004787 2.9e-35 152.9 212 53.3
CsaV3_7G007690 Cucumis sativus L. HOM05D004087 ORTHO05D004787 3.8e-35 152.5 188 54.8
FAN20G2318 Fragaria x ananassa HOM05D004087 ORTHO05D004787 3.8e-35 152.5 220 49.5
Cc02_g20080 Coffea canephora HOM05D004087 ORTHO05D004787 6.5e-35 151.8 197 54.3
FAN24G1045 Fragaria x ananassa HOM05D004087 ORTHO05D004787 8.5e-35 151.4 222 48.6
Nn5g30675 Nelumbo nucifera HOM05D004087 ORTHO05D004787 1.4e-34 150.6 224 49.6
RcHm_v2.0_Chr6g0248281 Rosa chinensis HOM05D004087 ORTHO05D004787 2.5e-34 149.8 213 49.3
FAN15G0324 Fragaria x ananassa HOM05D004087 ORTHO05D004787 7.2e-34 148.3 223 48.4
Thhalv10026262m.g Eutrema salsugineum HOM05D004087 ORTHO05D004787 1.2e-33 147.5 200 50.5
Sed0019763 Sechium edule HOM05D004087 ORTHO05D004787 1.6e-33 147.1 185 53.5
Oeu028917.1 Olea europaea HOM05D004087 ORTHO05D004787 2.7e-33 146.4 146 61.6
THA.LOC104807209 Tarenaya hassleriana HOM05D004087 ORTHO05D004787 2.7e-33 146.4 182 48.4
QL11p029242 Quercus lobata HOM05D004087 ORTHO05D004787 3.6e-33 146.0 192 55.2
Aa31sc355G20 Aethionema arabicum HOM05D004087 ORTHO05D004787 4.7e-33 145.6 217 48.4
Aqoxy6G02440 Aquilegia oxysepala HOM05D004087 ORTHO05D004787 4.7e-33 145.6 156 55.8
Sp7g31520 Schrenkiella parvula HOM05D004087 ORTHO05D004787 4.7e-33 145.6 183 51.4
Potri.001G289600 Populus trichocarpa HOM05D004087 ORTHO05D004787 6.1e-33 145.2 214 46.3
Carub.0007s0665 Capsella rubella HOM05D004087 ORTHO05D004787 7.9e-33 144.8 181 49.2
TWI59G0284 Tripterygium wilfordii HOM05D004087 ORTHO05D004787 7.9e-33 144.8 184 53.3
BcaNung04672 Brassica carinata HOM05D004087 ORTHO05D004787 1.8e-32 143.7 182 53.3
Migut.B00471 Erythranthe guttata HOM05D004087 ORTHO05D004787 1.8e-32 143.7 170 55.9
AL7G17680 Arabidopsis lyrata HOM05D004087 ORTHO05D004787 2.3e-32 143.3 183 50.8
AT4G33780 Arabidopsis thaliana HOM05D004087 ORTHO05D004787 2.3e-32 143.3 198 49.0
BcaNung02921 Brassica carinata HOM05D004087 ORTHO05D004787 8.8e-32 141.4 182 52.7
A03p62320 Brassica napus HOM05D004087 ORTHO05D004787 8.8e-32 141.4 171 55.6
BraA03t15307Z Brassica rapa HOM05D004087 ORTHO05D004787 8.8e-32 141.4 171 55.6
HanXRQChr17g0551501 Helianthus annuus HOM05D004087 ORTHO05D004787 1.1e-31 141.0 186 52.2
PGR042G2373 Punica granatum HOM05D004087 ORTHO05D004787 1.5e-31 140.6 188 46.8
BraA01t00439Z Brassica rapa HOM05D004087 ORTHO05D004787 2.0e-31 140.2 182 51.1
Gohir.A03G180900 Gossypium hirsutum HOM05D003497 ORTHO05D003964 2.6e-31 139.8 236 45.3
Gorai.005G229700 Gossypium raimondii HOM05D003497 ORTHO05D003964 1.7e-30 137.1 236 44.5
Manes.10G087100 Manihot esculenta HOM05D004087 ORTHO05D004787 1.7e-30 137.1 167 56.3
ATR0739G081 Amborella trichopoda HOM05D004087 ORTHO05D004787 2.2e-30 136.7 177 53.7
C01p04920 Brassica napus HOM05D004087 ORTHO05D004787 2.2e-30 136.7 129 56.6
C07p59880 Brassica napus HOM05D004087 ORTHO05D004787 2.2e-30 136.7 187 53.5
BolC7t46432H Brassica oleracea HOM05D004087 ORTHO05D004787 2.2e-30 136.7 187 53.5
Gohir.D02G203142 Gossypium hirsutum HOM05D003497 ORTHO05D004787 2.2e-30 136.7 236 44.5
CARHR241870 Cardamine hirsuta HOM05D004087 ORTHO05D004787 2.8e-30 136.3 184 50.0
BcaNung04326 Brassica carinata HOM05D004087 ORTHO05D004787 8.2e-30 134.8 128 57.0
Ah.01g007120 Amaranthus hybridus HOM05D004087 ORTHO05D004787 1.1e-29 134.4 209 48.8
Sc05g0005570 Simmondsia chinensis HOM05D004087 ORTHO05D004787 1.8e-29 133.7 170 54.1
Hund06504 Selenicereus undatus HOM05D004087 ORTHO05D004787 9.1e-29 131.3 218 48.2
DCAR_021942 Daucus carota HOM05D004087 ORTHO05D004787 1.2e-28 131.0 229 46.7
Hund06503 Selenicereus undatus HOM05D004087 ORTHO05D004787 1.6e-28 130.6 218 47.7
MD05G1106700 Malus domestica HOM05D004087 ORTHO05D004787 1.0e-27 127.9 222 46.4
Sabra16G0181200 Salix brachista HOM05D004087 ORTHO05D004787 1.3e-27 127.5 225 43.6
BolC1t00476H Brassica oleracea HOM05D004087 ORTHO05D004787 1.7e-27 127.1 124 54.0
CDE04G2047 Ceratophyllum demersum HOM05D004087 ORTHO05D004787 2.2e-27 126.7 129 54.3
Glyma.01G241400 Glycine max HOM05D004087 ORTHO05D004787 1.9e-26 123.6 124 54.0
BcaC09g52189 Brassica carinata HOM05D000477 ORTHO05D000338 4.2e-26 122.5 215 47.4
CDE06G2321 Ceratophyllum demersum HOM05D001904 ORTHO05D001854 1.6e-25 120.6 124 53.2
MBI16_g37623_MAGBIO Magnolia biondii HOM05D004087 ORTHO05D004787 1.0e-24 117.9 181 50.3
Zm00001eb009500 Zea mays HOM05D004087 ORTHO05D004787 2.3e-24 116.7 205 44.9
Phvul.002G050600 Phaseolus vulgaris HOM05D004087 ORTHO05D004787 3.0e-24 116.3 216 40.3
SGA_v2.0_scaffold32G12983 Striga asiatica HOM05D004087 ORTHO05D004787 2.2e-22 110.2 111 51.4
EL10Ac9g22175 Beta vulgaris HOM05D004087 ORTHO05D004787 4.8e-22 109.0 273 36.3
AUR62027025 Chenopodium quinoa HOM05D003497 ORTHO05D003964 4.1e-21 105.9 118 51.7
vmacro01944 Vaccinium macrocarpon HOM05D004087 ORTHO05D004787 2.9e-19 99.8 74 66.2
Sabra08G0144800 Salix brachista HOM05D004087 ORTHO05D004787 1.5e-18 97.4 127 45.7
Lj5A221T58 Lonicera japonica HOM05D004087 ORTHO05D004787 1.2e-17 94.4 121 58.7
Potri.008G190900 Populus trichocarpa HOM05D004087 ORTHO05D004787 2.1e-17 93.6 127 44.1
SalBow6G0931 Salvia bowleyana HOM05D004087 ORTHO05D004787 2.7e-17 93.2 106 51.9
Haze_10292 Corylus avellana HOM05D004087 ORTHO05D004787 8.0e-17 91.7 257 35.4
BcaC03g14363 Brassica carinata HOM05D004087 ORTHO05D004787 1.0e-16 91.3 92 56.5
Manes.05G094600 Manihot esculenta HOM05D004087 ORTHO05D004787 1.8e-16 90.5 127 44.1
BolC2t07908H Brassica oleracea HOM05D004087 ORTHO05D004787 5.2e-16 89.0 91 54.9
COL.COLO4_36242 Corchorus olitorius HOM05D004087 ORTHO05D004787 8.8e-16 88.2 127 41.7
PSO832G0995 Papaver somniferum HOM05D004087 ORTHO05D004787 8.8e-16 88.2 127 41.7
GSVIVG01020122001 Vitis vinifera HOM05D004087 ORTHO05D004787 8.8e-16 88.2 108 48.1
Glyma.01G039100 Glycine max HOM05D004087 ORTHO05D004787 1.2e-15 87.8 108 45.4
MD10G1111500 Malus domestica HOM05D004087 ORTHO05D004787 1.2e-15 87.8 171 48.0
CAN.G300.5 Capsicum annuum HOM05D004087 ORTHO05D004787 1.5e-15 87.4 167 44.3
Lalb_Chr05g0217411 Lupinus albus HOM05D004087 ORTHO05D004787 2.0e-15 87.0 109 45.9
Phvul.002G079300 Phaseolus vulgaris HOM05D004087 ORTHO05D004787 2.0e-15 87.0 108 45.4
Solyc04g005120.3 Solanum lycopersicum HOM05D004087 ORTHO05D004787 2.0e-15 87.0 106 47.2
Sopen04g001140 Solanum pennellii HOM05D004087 ORTHO05D004787 2.0e-15 87.0 106 47.2
VMungo1215G1106 Vigna mungo HOM05D004087 ORTHO05D004787 2.0e-15 87.0 108 45.4
Atru.chr11.1891 Acer truncatum HOM05D004087 ORTHO05D004787 2.6e-15 86.7 109 43.1
MBI01_g41231_MAGBIO Magnolia biondii HOM05D004087 ORTHO05D004787 2.6e-15 86.7 127 41.7
PSO591G0142 Papaver somniferum HOM05D004087 ORTHO05D004787 3.4e-15 86.3 108 44.4
arahy.Tifrunner.gnm1.ann1.0DC02M Arachis hypogaea HOM05D004087 ORTHO05D004787 4.4e-15 85.9 107 45.8
arahy.Tifrunner.gnm1.ann1.F53DZL Arachis hypogaea HOM05D004087 ORTHO05D004787 4.4e-15 85.9 107 45.8
MELO3C018531.2 Cucumis melo HOM05D004087 ORTHO05D004787 7.5e-15 85.1 135 51.1
Glyma.02G025600 Glycine max HOM05D004087 ORTHO05D004787 7.5e-15 85.1 106 44.3
Medtr5g037230 Medicago truncatula HOM05D004087 ORTHO05D004787 9.8e-15 84.7 108 43.5
Peaxi162Scf00187g00617 Petunia axillaris HOM05D004087 ORTHO05D004787 9.8e-15 84.7 114 45.6
Cpa.g.sc5.304 Carica papaya HOM05D004087 ORTHO05D004787 1.3e-14 84.3 106 43.4
RhsimUnG0040800 Rhododendron simsii HOM05D004087 ORTHO05D004787 1.3e-14 84.3 112 44.6
Actinidia01168 Actinidia chinensis HOM05D004087 ORTHO05D004787 1.7e-14 84.0 192 35.4
TPR.G26706 Trifolium pratense HOM05D004087 ORTHO05D004787 1.7e-14 84.0 109 41.3
Ciclev10032809m.g Citrus clementina HOM05D004087 ORTHO05D004787 2.8e-14 83.2 108 42.6
TAR622G0570 Trochodendron aralioides HOM05D004087 ORTHO05D004787 3.7e-14 82.8 108 46.3
Aqoxy3G03190 Aquilegia oxysepala HOM05D004087 ORTHO05D004787 4.8e-14 82.4 108 45.4
CiPaw.06G078300 Carya illinoinensis HOM05D004087 ORTHO05D004787 4.8e-14 82.4 106 45.3
Nitab4.5_0000710g0070 Nicotiana tabacum HOM05D004087 ORTHO05D004787 4.8e-14 82.4 126 49.2
Hma1.2p1_0289F.1_g114450 Hydrangea macrophylla HOM05D004087 ORTHO05D004787 8.3e-14 81.6 110 45.5
Psat2g117160 Pisum sativum HOM05D004087 ORTHO05D004787 1.1e-13 81.3 108 43.5
PGR119G1273 Punica granatum HOM05D004087 ORTHO05D004787 1.1e-13 81.3 106 45.3
BcaB03g14773 Brassica carinata HOM05D004087 ORTHO05D004787 1.4e-13 80.9 108 44.4
Eucgr.B02582 Eucalyptus grandis HOM05D004087 ORTHO05D004787 1.4e-13 80.9 106 44.3
Gohir.D04G136500 Gossypium hirsutum HOM05D004087 ORTHO05D004787 1.4e-13 80.9 108 41.7
Gorai.012G120300 Gossypium raimondii HOM05D004087 ORTHO05D004787 1.4e-13 80.9 108 41.7
BcaC08g46444 Brassica carinata HOM05D004087 ORTHO05D004787 2.4e-13 80.1 108 43.5
C06p43810 Brassica napus HOM05D004087 ORTHO05D004787 2.4e-13 80.1 108 43.5
BolC6t39453H Brassica oleracea HOM05D004087 ORTHO05D004787 2.4e-13 80.1 108 43.5
A07p36390 Brassica napus HOM05D004087 ORTHO05D004787 5.4e-13 79.0 108 43.5
A01p04540 Brassica napus HOM05D004087 ORTHO05D004787 9.1e-13 78.2 131 47.3
BraA07t31211Z Brassica rapa HOM05D004087 ORTHO05D004787 9.1e-13 78.2 105 43.8
Lj2g0011291 Lotus japonicus HOM05D004087 ORTHO05D004787 9.1e-13 78.2 109 42.2
Sp5g25060 Schrenkiella parvula HOM05D004087 ORTHO05D004787 1.2e-12 77.8 170 40.0
Gohir.A13G047950 Gossypium hirsutum HOM05D004087 ORTHO05D004787 1.6e-12 77.4 130 43.1
THA.LOC104822080 Tarenaya hassleriana HOM05D004087 ORTHO05D004787 1.6e-12 77.4 104 39.4
CARHR063040 Cardamine hirsuta HOM05D004087 ORTHO05D004787 2.7e-12 76.6 109 39.4
AUR62030868 Chenopodium quinoa HOM05D004087 ORTHO05D004787 7.7e-12 75.1 91 48.4
Carub.0002s1665 Capsella rubella HOM05D004087 ORTHO05D004787 1.0e-11 74.7 104 40.4
Thhalv10019201m.g Eutrema salsugineum HOM05D004087 ORTHO05D004787 1.0e-11 74.7 109 38.5
Dinv24938 Davidia involucrata HOM05D004087 ORTHO05D004787 1.7e-11 73.9 98 44.9
AL2G29180 Arabidopsis lyrata HOM05D004087 ORTHO05D004787 2.9e-11 73.2 108 38.9
Haze_12080 Corylus avellana HOM05D004087 ORTHO05D004787 3.8e-11 72.8 188 31.4
Cpa.g.sc106.30 Carica papaya HOM05D004087 ORTHO05D004787 6.5e-11 72.0 95 58.9
AT1G69935 Arabidopsis thaliana HOM05D004087 ORTHO05D004787 8.5e-11 71.6 108 38.0
VMungo1215G2093 Vigna mungo HOM05D004087 ORTHO05D004787 8.5e-11 71.6 158 34.2
C02p17780 Brassica napus HOM05D004087 ORTHO05D004787 1.1e-10 71.2 78 52.6
unitig_0.g632 Utricularia gibba HOM05D004087 ORTHO05D004787 1.2e-09 67.8 77 50.6
Cfa009049 Carpinus fangiana HOM05D004087 ORTHO05D004787 6.1e-09 65.5 106 38.7
Lsat_1_v5_gn_9_118200 Lactuca sativa HOM05D004087 ORTHO05D004787 8.0e-09 65.1 102 53.9
Mapoly0011s0173 Marchantia polymorpha HOM05D004087 ORTHO05D004787 1.0e-08 64.7 132 27.3
Lsat_1_v5_gn_3_112521 Lactuca sativa HOM05D004087 ORTHO05D004787 1.4e-08 64.3 94 53.2
Rhsim12G0127500 Rhododendron simsii HOM05D004087 ORTHO05D004787 5.2e-08 62.4 151 33.1
AagrBONN_evm.TU.Sc2ySwM_344.3821 Anthoceros agrestis HOM05D004087 ORTHO05D004787 2.8e-06 56.6 116 31.9


User provided reference genes

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