Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0008996g0010 Nicotiana tabacum HOM05D004252 ORTHO05D005101 0.0e+00 2691.0 1390 100.0
Nitab4.5_0001592g0060 Nicotiana tabacum HOM05D004252 ORTHO05D005101 0.0e+00 2391.3 1536 82.9
Peaxi162Scf00282g00418 Petunia axillaris HOM05D004252 ORTHO05D005101 0.0e+00 2340.5 1758 73.2
Solyc01g097320.3 Solanum lycopersicum HOM05D004252 ORTHO05D005101 0.0e+00 2274.2 1764 71.4
Sopen01g040990 Solanum pennellii HOM05D004252 ORTHO05D005101 0.0e+00 2103.2 1664 70.3
Dinv20302 Davidia involucrata HOM05D004252 ORTHO05D005101 0.0e+00 1872.8 1791 59.3
Cc02_g30700 Coffea canephora HOM05D004252 ORTHO05D005101 0.0e+00 1845.5 1785 58.7
Lj1A1079G39 Lonicera japonica HOM05D004252 ORTHO05D005101 0.0e+00 1792.7 1775 57.8
CSS0026350 Camellia sinensis var. sinensis HOM05D004252 ORTHO05D005101 0.0e+00 1781.5 1773 58.0
TWI12G0933 Tripterygium wilfordii HOM05D004252 ORTHO05D005101 0.0e+00 1746.5 1777 56.3
Prupe.6G343600 Prunus persica HOM05D004252 ORTHO05D005101 0.0e+00 1743.0 1795 56.3
GSVIVG01021781001 Vitis vinifera HOM05D004252 ORTHO05D005101 0.0e+00 1741.9 1706 58.7
Cfa006427 Carpinus fangiana HOM05D004252 ORTHO05D005101 0.0e+00 1741.1 1806 55.8
Actinidia32806 Actinidia chinensis HOM05D004252 ORTHO05D005101 0.0e+00 1739.2 1723 57.6
Thecc.05G283200 Theobroma cacao HOM05D004252 ORTHO05D005101 0.0e+00 1738.8 1804 56.0
COL.COLO4_15351 Corchorus olitorius HOM05D004252 ORTHO05D005101 0.0e+00 1735.7 1795 55.4
Ciclev10000014m.g Citrus clementina HOM05D004252 ORTHO05D005101 0.0e+00 1735.3 1792 56.0
QL03p026982 Quercus lobata HOM05D004252 ORTHO05D005101 0.0e+00 1735.3 1818 55.7
Haze_04358 Corylus avellana HOM05D004252 ORTHO05D005101 0.0e+00 1731.1 1841 54.8
Manes.09G152800 Manihot esculenta HOM05D004252 ORTHO05D005101 0.0e+00 1729.9 1802 55.4
CiPaw.08G123300 Carya illinoinensis HOM05D004252 ORTHO05D005101 0.0e+00 1723.8 1809 55.4
Migut.B01091 Erythranthe guttata HOM05D004252 ORTHO05D005101 0.0e+00 1714.5 1778 56.2
Duzib128G1785 Durio zibethinus HOM05D004252 ORTHO05D005101 0.0e+00 1708.3 1811 54.9
MD12G1241600 Malus domestica HOM05D004252 ORTHO05D005101 0.0e+00 1706.8 1785 55.7
MD04G1224900 Malus domestica HOM05D004252 ORTHO05D005101 0.0e+00 1703.7 1787 55.3
Duzib177G1152 Durio zibethinus HOM05D004252 ORTHO05D005101 0.0e+00 1703.0 1797 55.1
DCAR_023243 Daucus carota HOM05D004252 ORTHO05D005101 0.0e+00 1698.7 1760 55.3
Gorai.004G246800 Gossypium raimondii HOM05D004252 ORTHO05D005101 0.0e+00 1696.8 1803 55.1
TAR362G1238 Trochodendron aralioides HOM05D004252 ORTHO05D005101 0.0e+00 1694.9 1807 54.7
SalBow3G2512 Salvia bowleyana HOM05D004252 ORTHO05D005101 0.0e+00 1694.1 1766 55.5
CANSAT54G1217 Cannabis sativa HOM05D004252 ORTHO05D005101 0.0e+00 1693.7 1784 55.3
Gohir.D08G232300 Gossypium hirsutum HOM05D004252 ORTHO05D005101 0.0e+00 1693.7 1803 55.0
RcHm_v2.0_Chr3g0451091 Rosa chinensis HOM05D004252 ORTHO05D005101 0.0e+00 1689.1 1781 55.3
Potri.005G053700 Populus trichocarpa HOM05D004252 ORTHO05D005101 0.0e+00 1686.4 1796 54.9
Rhsim04G0066800 Rhododendron simsii HOM05D004252 ORTHO05D005101 0.0e+00 1686.0 1790 55.2
Nn3g19509 Nelumbo nucifera HOM05D004252 ORTHO05D005101 0.0e+00 1684.1 1800 53.6
vmacro20358 Vaccinium macrocarpon HOM05D004252 ORTHO05D005101 0.0e+00 1675.2 1850 53.4
Sabra05G0047100 Salix brachista HOM05D004252 ORTHO05D005101 0.0e+00 1666.7 1796 54.2
Potri.013G041201 Populus trichocarpa HOM05D004252 ORTHO05D005101 0.0e+00 1664.0 1797 54.2
FvH4_6g02880 Fragaria vesca HOM05D004252 ORTHO05D005101 0.0e+00 1663.7 1798 54.4
Glyma.19G245100 Glycine max HOM05D004252 ORTHO05D005101 0.0e+00 1660.2 1784 53.8
TAR633G0655 Trochodendron aralioides HOM05D004252 ORTHO05D005101 0.0e+00 1651.3 1810 53.6
FAN05G2119 Fragaria x ananassa HOM05D004252 ORTHO05D005101 0.0e+00 1647.1 1793 54.3
FAN02G2888 Fragaria x ananassa HOM05D004252 ORTHO05D005101 0.0e+00 1641.3 1804 54.0
CAN.G134.97 Capsicum annuum HOM05D004252 ORTHO05D005101 0.0e+00 1640.9 1201 75.1
VMungo0540G0159 Vigna mungo HOM05D004252 ORTHO05D005101 0.0e+00 1640.9 1787 53.7
Sabra13G0038000 Salix brachista HOM05D004252 ORTHO05D005101 0.0e+00 1640.6 1832 52.8
arahy.Tifrunner.gnm1.ann1.9CBY7M Arachis hypogaea HOM05D004252 ORTHO05D005101 0.0e+00 1640.2 1784 53.5
CsaV3_2G004140 Cucumis sativus L. HOM05D004252 ORTHO05D005101 0.0e+00 1640.2 1795 53.6
FAN09G2874 Fragaria x ananassa HOM05D004252 ORTHO05D005101 0.0e+00 1638.6 1795 54.2
DCAR_014751 Daucus carota HOM05D004252 ORTHO05D005101 0.0e+00 1636.3 1778 53.4
Glyma.03G247300 Glycine max HOM05D004252 ORTHO05D005101 0.0e+00 1633.2 1789 53.2
Phvul.006G101900 Phaseolus vulgaris HOM05D004252 ORTHO05D005101 0.0e+00 1632.5 1794 53.1
Sed0025221 Sechium edule HOM05D004252 ORTHO05D005101 0.0e+00 1626.7 1796 53.2
arahy.Tifrunner.gnm1.ann1.39XKQR Arachis hypogaea HOM05D004252 ORTHO05D005101 0.0e+00 1626.3 1783 53.4
PGR142G2894 Punica granatum HOM05D004252 ORTHO05D005101 0.0e+00 1617.8 1799 53.7
Lj1g0020341 Lotus japonicus HOM05D004252 ORTHO05D005101 0.0e+00 1617.4 1785 53.5
Sed0020402 Sechium edule HOM05D004252 ORTHO05D005101 0.0e+00 1616.7 1796 53.1
Lalb_Chr04g0262241 Lupinus albus HOM05D004252 ORTHO05D005101 0.0e+00 1614.0 1785 52.5
Aqoxy5G01125 Aquilegia oxysepala HOM05D004252 ORTHO05D005101 0.0e+00 1611.7 1766 53.1
EL10Ac4g09148 Beta vulgaris HOM05D004252 ORTHO05D005101 0.0e+00 1608.2 1756 53.2
MELO3C004380.2 Cucumis melo HOM05D004252 ORTHO05D005101 0.0e+00 1606.3 1859 52.1
ECA240G2739 Erigeron canadensis HOM05D004252 ORTHO05D005101 0.0e+00 1599.3 1725 54.1
Medtr7g115190 Medicago truncatula HOM05D004252 ORTHO05D005101 0.0e+00 1598.6 1753 53.3
Sc20g0000330 Simmondsia chinensis HOM05D004252 ORTHO05D005101 0.0e+00 1586.6 1764 52.6
PSO832G2970 Papaver somniferum HOM05D004252 ORTHO05D005101 0.0e+00 1585.9 1800 52.2
PSO210G6431 Papaver somniferum HOM05D004252 ORTHO05D005101 0.0e+00 1583.9 1797 52.5
Psat3g007080 Pisum sativum HOM05D004252 ORTHO05D005101 0.0e+00 1575.8 1778 51.9
Hund06974 Selenicereus undatus HOM05D004252 ORTHO05D005101 0.0e+00 1567.7 1779 52.8
AUR62004951 Chenopodium quinoa HOM05D004252 ORTHO05D005101 0.0e+00 1567.0 1760 53.4
Ca_09423_v3 Cicer arietinum L. HOM05D004252 ORTHO05D005101 0.0e+00 1563.9 1787 52.4
Ca_29790_v3 Cicer arietinum L. HOM05D004252 ORTHO05D005101 0.0e+00 1563.9 1787 52.4
ClCG02G016630 Citrullus lanatus HOM05D004252 ORTHO05D005101 0.0e+00 1559.3 1795 52.1
HanXRQChr03g0080781 Helianthus annuus HOM05D004252 ORTHO05D005101 0.0e+00 1553.9 1704 53.6
Aqoxy6G01279 Aquilegia oxysepala HOM05D004252 ORTHO05D005101 0.0e+00 1552.0 1758 52.1
HanXRQChr13g0411361 Helianthus annuus HOM05D004252 ORTHO05D005101 0.0e+00 1540.8 1708 53.3
Eucgr.B02119 Eucalyptus grandis HOM05D004252 ORTHO05D005101 0.0e+00 1531.2 1796 50.7
TPR.G6924 Trifolium pratense HOM05D004252 ORTHO05D005101 0.0e+00 1501.9 1761 51.0
Lsat_1_v5_gn_5_53600 Lactuca sativa HOM05D004252 ORTHO05D005101 0.0e+00 1500.3 1674 54.2
THA.LOC104821672 Tarenaya hassleriana HOM05D004252 ORTHO05D005101 0.0e+00 1492.6 1761 50.9
THA.LOC104818630 Tarenaya hassleriana HOM05D004252 ORTHO05D005101 0.0e+00 1483.4 1707 52.2
Medtr1g087060 Medicago truncatula HOM05D004252 ORTHO05D005101 0.0e+00 1478.8 1745 50.2
AT3G04740 Arabidopsis thaliana HOM05D004252 ORTHO05D005101 0.0e+00 1474.5 1716 51.9
AL3G14870 Arabidopsis lyrata HOM05D004252 ORTHO05D005101 0.0e+00 1462.6 1720 51.5
Thhalv10019885m.g Eutrema salsugineum HOM05D004252 ORTHO05D005101 0.0e+00 1458.0 1721 51.1
Sp3g03590 Schrenkiella parvula HOM05D004252 ORTHO05D005101 0.0e+00 1457.2 1724 51.0
Aa31LG5G15140 Aethionema arabicum HOM05D004252 ORTHO05D005101 0.0e+00 1452.2 1661 52.4
unitig_699.g19676 Utricularia gibba HOM05D004252 ORTHO05D005101 0.0e+00 1448.0 1698 51.8
Carub.0003s0391 Capsella rubella HOM05D004252 ORTHO05D005101 0.0e+00 1426.4 1716 50.7
A05p42820 Brassica napus HOM05D004252 ORTHO05D005101 0.0e+00 1426.0 1640 52.4
C05p62540 Brassica napus HOM05D004252 ORTHO05D005101 0.0e+00 1423.3 1635 52.7
BolC5t34909H Brassica oleracea HOM05D004252 ORTHO05D005101 0.0e+00 1422.5 1635 52.7
BraA05t22970Z Brassica rapa HOM05D004252 ORTHO05D005101 0.0e+00 1412.1 1661 51.7
CDE06G0814 Ceratophyllum demersum HOM05D004252 ORTHO05D005101 0.0e+00 1397.9 1807 47.0
ATR0665G632 Amborella trichopoda HOM05D004252 ORTHO05D005101 0.0e+00 1376.7 1834 45.9
AUR62001006 Chenopodium quinoa HOM05D004252 ORTHO05D005101 0.0e+00 1344.3 1768 48.2
Gohir.A08G215700 Gossypium hirsutum HOM05D004252 ORTHO05D005101 0.0e+00 1330.5 1355 57.0
Os09g0281900 Oryza sativa ssp. japonica HOM05D004252 ORTHO05D005101 0.0e+00 1288.1 1722 45.9
Zm00001eb097360 Zea mays HOM05D004252 ORTHO05D005101 0.0e+00 1262.3 1711 45.7
HPP92_026425 Vanilla planifolia HOM05D004252 ORTHO05D005101 0.0e+00 1216.1 1586 47.7
Dinv08153 Davidia involucrata HOM05D004252 ORTHO05D005101 0.0e+00 1198.0 1208 56.3
arahy.Tifrunner.gnm1.ann1.QZ0BKE Arachis hypogaea HOM05D004252 ORTHO05D005101 0.0e+00 1162.9 1320 52.9
Oeu002657.3 Olea europaea HOM05D004252 ORTHO05D005101 0.0e+00 1160.6 1333 52.4
arahy.Tifrunner.gnm1.ann1.YD0KDM Arachis hypogaea HOM05D004252 ORTHO05D005101 0.0e+00 1157.9 1330 52.1
BcaB04g19300 Brassica carinata HOM05D004252 ORTHO05D005101 0.0e+00 1135.2 1565 46.6
CiPaw.07G067400 Carya illinoinensis HOM05D004252 ORTHO05D005101 0.0e+00 1111.3 1355 51.3
FAN14G3887 Fragaria x ananassa HOM05D004252 ORTHO05D005101 1.6e-293 1013.4 874 64.0
arahy.Tifrunner.gnm1.ann1.795G7S Arachis hypogaea HOM05D004252 ORTHO05D005101 1.2e-277 960.7 1184 49.7
Mapoly0110s0011 Marchantia polymorpha HOM05D004252 ORTHO05D005101 4.0e-260 902.5 1941 35.1
SMO118G0536 Selaginella moellendorffii HOM05D004252 ORTHO05D005101 4.9e-258 895.6 1700 37.3
Ah.06g192370 Amaranthus hybridus HOM05D004252 ORTHO05D005101 2.1e-253 880.2 1291 45.5
Pp3c9_5080 Physcomitrium patens HOM05D004252 ORTHO05D005101 2.1e-237 827.0 1874 33.8
AagrBONN_evm.TU.Sc2ySwM_368.2529 Anthoceros agrestis HOM05D004252 ORTHO05D005101 4.0e-236 822.8 1866 34.3
Oeu027473.1 Olea europaea HOM05D004252 ORTHO05D005101 3.7e-229 799.7 1093 46.1
Pp3c9_4280 Physcomitrium patens HOM05D004252 ORTHO05D005101 5.3e-228 795.8 1905 32.8
CDE02G2007 Ceratophyllum demersum HOM05D004252 ORTHO05D005101 1.7e-226 790.8 635 64.3
SGA_v2.0_scaffold172G38984 Striga asiatica HOM05D004252 ORTHO05D005101 1.7e-205 721.1 741 57.6
Ah.06g192380 Amaranthus hybridus HOM05D004252 ORTHO05D005101 3.2e-193 680.2 466 74.9
CARHR078990 Cardamine hirsuta HOM05D004252 ORTHO05D005101 7.2e-193 679.1 708 55.9
SEGI_19302 Sequoiadendron giganteum HOM05D004252 ORTHO05D005101 2.6e-182 644.0 1343 37.6
SHI18417 Sapria himalayana HOM05D004252 ORTHO05D005101 8.3e-181 639.0 1349 35.4
arahy.Tifrunner.gnm1.ann1.8T8W7S Arachis hypogaea HOM05D004252 ORTHO05D005101 1.4e-180 638.3 610 57.9
CDE02G1705 Ceratophyllum demersum HOM05D004252 ORTHO05D005101 5.4e-172 609.8 726 50.1
Oeu027472.1 Olea europaea HOM05D004252 ORTHO05D005101 3.7e-165 587.0 361 79.8
Cpa.g.c42029 Carica papaya HOM05D004252 ORTHO05D005101 3.5e-163 580.5 360 79.4
Os08g0332800 Oryza sativa ssp. japonica HOM05D004252 ORTHO05D005101 3.4e-158 563.9 426 65.7
CAN.G134.96 Capsicum annuum HOM05D004252 ORTHO05D005101 6.4e-141 506.5 443 63.7
Cpa.g.sc2756.2 Carica papaya HOM05D004252 ORTHO05D005101 5.1e-122 443.7 334 71.6
SHI18418 Sapria himalayana HOM05D004252 ORTHO05D005101 4.2e-116 424.1 538 48.5
Aqoxy1G03371 Aquilegia oxysepala HOM05D004252 ORTHO05D005101 3.9e-114 417.5 329 68.4
Atru.chr2.823 Acer truncatum HOM05D004252 ORTHO05D005101 1.8e-111 408.7 264 79.2
arahy.Tifrunner.gnm1.ann1.82F4VT Arachis hypogaea HOM05D004252 ORTHO05D005101 1.0e-101 376.3 401 54.6
Atru.chr2.822 Acer truncatum HOM05D004252 ORTHO05D005101 3.8e-101 374.4 230 80.9
Dinv08152 Davidia involucrata HOM05D004252 ORTHO05D005101 6.7e-98 363.6 211 84.4
Cpa.g.sc2756.3 Carica papaya HOM05D004252 ORTHO05D005101 1.3e-96 359.4 412 51.5
Os08g0333000 Oryza sativa ssp. japonica HOM05D004252 ORTHO05D005101 3.1e-79 301.6 236 65.7
HanXRQChr01g0016721 Helianthus annuus HOM05D004252 ORTHO05D005101 7.2e-60 237.3 201 63.7
HanXRQChr13g0410791 Helianthus annuus HOM05D004252 ORTHO05D005101 7.2e-60 237.3 200 64.0
arahy.Tifrunner.gnm1.ann1.E2R4RP Arachis hypogaea HOM05D004252 ORTHO05D005101 3.6e-59 235.0 172 70.9
HanXRQChr10g0278361 Helianthus annuus HOM05D004252 ORTHO05D005101 1.2e-57 229.9 201 63.2
Atru.chr2.826 Acer truncatum HOM05D004252 ORTHO05D005101 1.4e-50 206.5 144 72.9
Cpa.g.sc2756.1 Carica papaya HOM05D004252 ORTHO05D005101 6.8e-50 204.1 141 76.6
Atru.chr2.825 Acer truncatum HOM05D004252 ORTHO05D005101 2.4e-47 195.7 131 74.0
Oeu021056.1 Olea europaea HOM05D004252 ORTHO05D005101 6.0e-38 164.5 115 67.0
Sopen00g013550 Solanum pennellii HOM05D004252 ORTHO05D005101 4.7e-27 128.3 71 93.0
Atru.chr2.824 Acer truncatum HOM05D004252 ORTHO05D005101 5.2e-26 124.8 186 45.2
CAN.G1116.5 Capsicum annuum HOM05D004252 ORTHO05D005101 3.4e-25 122.1 70 88.6
SEGI_18631 Sequoiadendron giganteum HOM05D000173 ORTHO05D006747 7.1e-23 114.4 90 64.4
Cpa.g.sc1346.1 Carica papaya HOM05D004252 ORTHO05D005101 5.1e-21 108.2 70 78.6
SEGI_17147 Sequoiadendron giganteum HOM05D004252 ORTHO05D005101 1.9e-15 89.7 66 66.7
SEGI_02854 Sequoiadendron giganteum HOM05D004252 ORTHO05D005101 9.3e-15 87.4 70 61.4
MCO11G870 Micromonas commoda HOM05D004252 ORTHO05D005101 3.9e-13 82.0 204 27.5
Gohir.D03G054650 Gossypium hirsutum HOM05D004252 ORTHO05D005101 6.6e-13 81.3 39 87.2
Gohir.D01G110850 Gossypium hirsutum HOM05D004252 ORTHO05D005101 8.7e-13 80.9 34 100.0
Gohir.D04G023525 Gossypium hirsutum HOM05D004252 ORTHO05D005101 8.7e-13 80.9 34 100.0
Gohir.D10G142750 Gossypium hirsutum HOM05D004252 ORTHO05D005101 8.7e-13 80.9 34 100.0
Gohir.D12G169250 Gossypium hirsutum HOM05D004252 ORTHO05D005101 8.7e-13 80.9 34 100.0
Gorai.004G036500 Gossypium raimondii HOM05D004252 ORTHO05D005101 8.7e-13 80.9 34 100.0
Cre03.g190550 Chlamydomonas reinhardtii HOM05D004252 ORTHO05D005101 2.4e-07 62.8 198 26.3


User provided reference genes

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