Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0008846g0010 Nicotiana tabacum HOM05D003776 ORTHO05D004459 0.0e+00 2495.7 1263 100.0
Nitab4.5_0002658g0150 Nicotiana tabacum HOM05D003776 ORTHO05D004459 0.0e+00 2245.7 1390 85.1
Sopen12g002420 Solanum pennellii HOM05D003776 ORTHO05D004459 0.0e+00 2196.4 1416 80.7
Solyc12g006480.2 Solanum lycopersicum HOM05D003776 ORTHO05D004459 0.0e+00 2191.4 1416 80.8
Peaxi162Scf01211g00016 Petunia axillaris HOM05D003776 ORTHO05D004459 0.0e+00 2070.4 1454 76.3
Cc06_g08530 Coffea canephora HOM05D003776 ORTHO05D004459 0.0e+00 1845.5 1421 68.3
GSVIVG01015528001 Vitis vinifera HOM05D003776 ORTHO05D004459 0.0e+00 1823.1 1429 66.6
Rhsim03G0247900 Rhododendron simsii HOM05D003776 ORTHO05D004459 0.0e+00 1818.9 1453 66.3
MSTRG.19598 Avicennia marina HOM05D003776 ORTHO05D004459 0.0e+00 1815.8 1423 66.8
TAR625G0211 Trochodendron aralioides HOM05D003776 ORTHO05D004459 0.0e+00 1813.5 1429 66.2
Cfa003371 Carpinus fangiana HOM05D003776 ORTHO05D004459 0.0e+00 1812.0 1424 66.5
Thecc.09G126200 Theobroma cacao HOM05D003776 ORTHO05D004459 0.0e+00 1811.2 1428 65.8
QL02p088328 Quercus lobata HOM05D003776 ORTHO05D004459 0.0e+00 1809.3 1425 66.5
CiPaw.03G244000 Carya illinoinensis HOM05D003776 ORTHO05D004459 0.0e+00 1803.1 1424 65.4
Dinv36529 Davidia involucrata HOM05D003776 ORTHO05D004459 0.0e+00 1791.2 1351 69.4
vmacro06129 Vaccinium macrocarpon HOM05D003776 ORTHO05D004459 0.0e+00 1785.8 1415 66.3
Gohir.D07G039800 Gossypium hirsutum HOM05D003776 ORTHO05D004459 0.0e+00 1775.4 1428 64.5
Haze_25580 Corylus avellana HOM05D003776 ORTHO05D004459 0.0e+00 1775.0 1431 65.3
Nn8g39448 Nelumbo nucifera HOM05D003776 ORTHO05D004459 0.0e+00 1775.0 1427 64.3
Ciclev10007244m.g Citrus clementina HOM05D003776 ORTHO05D004459 0.0e+00 1771.1 1428 64.8
Migut.J01158 Erythranthe guttata HOM05D003776 ORTHO05D004459 0.0e+00 1771.1 1424 65.4
Gohir.A07G035800 Gossypium hirsutum HOM05D003776 ORTHO05D004459 0.0e+00 1771.1 1428 64.6
Atru.chr7.1164 Acer truncatum HOM05D003776 ORTHO05D004459 0.0e+00 1766.9 1427 65.0
CANSAT11G0130 Cannabis sativa HOM05D003776 ORTHO05D004459 0.0e+00 1762.3 1429 64.4
MD02G1032900 Malus domestica HOM05D003776 ORTHO05D004459 0.0e+00 1756.9 1426 64.4
Manes.05G119700 Manihot esculenta HOM05D003776 ORTHO05D004459 0.0e+00 1755.3 1428 63.9
Prupe.7G242500 Prunus persica HOM05D003776 ORTHO05D004459 0.0e+00 1752.6 1429 64.4
TWI34G1787 Tripterygium wilfordii HOM05D003776 ORTHO05D004459 0.0e+00 1742.2 1427 63.5
Potri.006G119600 Populus trichocarpa HOM05D003776 ORTHO05D004459 0.0e+00 1739.9 1427 64.3
HanXRQChr10g0315491 Helianthus annuus HOM05D003776 ORTHO05D004459 0.0e+00 1738.4 1408 64.3
ECA234G1804 Erigeron canadensis HOM05D003776 ORTHO05D004459 0.0e+00 1733.4 1453 62.7
RcHm_v2.0_Chr2g0088511 Rosa chinensis HOM05D003776 ORTHO05D004459 0.0e+00 1729.5 1429 64.1
Gorai.001G042000 Gossypium raimondii HOM05D003776 ORTHO05D004459 0.0e+00 1725.3 1427 63.5
Glyma.06G222100 Glycine max HOM05D003776 ORTHO05D004459 0.0e+00 1720.7 1428 63.3
FvH4_1g03320 Fragaria vesca HOM05D003776 ORTHO05D004459 0.0e+00 1719.9 1429 63.5
FAN23G1640 Fragaria x ananassa HOM05D003776 ORTHO05D004459 0.0e+00 1719.5 1427 63.4
Lsat_1_v5_gn_5_96021 Lactuca sativa HOM05D003776 ORTHO05D004459 0.0e+00 1718.0 1423 62.8
FAN26G1438 Fragaria x ananassa HOM05D003776 ORTHO05D004459 0.0e+00 1716.8 1429 63.3
Lj7C629G11 Lonicera japonica HOM05D003776 ORTHO05D004459 0.0e+00 1703.0 1263 69.1
FAN28G2120 Fragaria x ananassa HOM05D003776 ORTHO05D004459 0.0e+00 1695.6 1431 62.7
Ca_14403_v3 Cicer arietinum L. HOM05D003776 ORTHO05D004459 0.0e+00 1692.2 1428 62.7
Sc08g0006640 Simmondsia chinensis HOM05D003776 ORTHO05D004459 0.0e+00 1691.8 1427 62.1
Lalb_Chr11g0072121 Lupinus albus HOM05D003776 ORTHO05D004459 0.0e+00 1690.6 1439 62.9
Lj3g0001115 Lotus japonicus HOM05D003776 ORTHO05D004459 0.0e+00 1689.1 1429 62.4
Phvul.009G198200 Phaseolus vulgaris HOM05D003776 ORTHO05D004459 0.0e+00 1683.7 1429 62.6
Sabra06G0094200 Salix brachista HOM05D003776 ORTHO05D004459 0.0e+00 1680.6 1532 59.4
Psat1g024680 Pisum sativum HOM05D003776 ORTHO05D004459 0.0e+00 1676.0 1432 61.9
Eucgr.C04218 Eucalyptus grandis HOM05D003776 ORTHO05D004459 0.0e+00 1672.1 1425 62.4
TPR.G21471 Trifolium pratense HOM05D003776 ORTHO05D004459 0.0e+00 1670.2 1432 62.1
Medtr7g099880 Medicago truncatula HOM05D003776 ORTHO05D004459 0.0e+00 1667.1 1432 61.9
Aqoxy7G02178 Aquilegia oxysepala HOM05D003776 ORTHO05D004459 0.0e+00 1650.2 1424 61.4
FAN19G1245 Fragaria x ananassa HOM05D003776 ORTHO05D004459 0.0e+00 1648.6 1429 61.5
Aqoxy3G01756 Aquilegia oxysepala HOM05D003776 ORTHO05D004459 0.0e+00 1644.4 1423 61.2
PSO455G0084 Papaver somniferum HOM05D003776 ORTHO05D004459 0.0e+00 1643.6 1434 61.1
CsaV3_2G002830 Cucumis sativus L. HOM05D003776 ORTHO05D004459 0.0e+00 1640.9 1424 59.7
PSO170G4267 Papaver somniferum HOM05D003776 ORTHO05D004459 0.0e+00 1633.2 1428 60.7
Sed0006794 Sechium edule HOM05D003776 ORTHO05D004459 0.0e+00 1625.9 1426 59.5
DCAR_017818 Daucus carota HOM05D003776 ORTHO05D004459 0.0e+00 1612.4 1489 58.6
THA.LOC104808989 Tarenaya hassleriana HOM05D003776 ORTHO05D004459 0.0e+00 1607.0 1429 59.1
PGR102G3028 Punica granatum HOM05D003776 ORTHO05D004459 0.0e+00 1604.3 1432 59.8
Duzib168G2222 Durio zibethinus HOM05D003776 ORTHO05D004459 0.0e+00 1603.2 1423 60.4
EL10Ac8g18652 Beta vulgaris HOM05D003776 ORTHO05D004459 0.0e+00 1585.5 1445 59.4
Carub.0008s1091 Capsella rubella HOM05D003776 ORTHO05D004459 0.0e+00 1570.1 1417 58.5
Sp4g09050 Schrenkiella parvula HOM05D003776 ORTHO05D004459 0.0e+00 1561.6 1423 58.3
AUR62013362 Chenopodium quinoa HOM05D003776 ORTHO05D004459 0.0e+00 1559.7 1424 59.3
AL8G25470 Arabidopsis lyrata HOM05D003776 ORTHO05D004459 0.0e+00 1559.3 1421 58.2
CARHR118630 Cardamine hirsuta HOM05D003776 ORTHO05D004459 0.0e+00 1558.9 1423 58.6
AT5G51200 Arabidopsis thaliana HOM05D003776 ORTHO05D004459 0.0e+00 1557.0 1421 58.1
ClCG11G003010 Citrullus lanatus HOM05D003776 ORTHO05D004459 0.0e+00 1554.7 1343 60.8
Hund09133 Selenicereus undatus HOM05D003776 ORTHO05D004459 0.0e+00 1533.9 1429 58.5
AUR62011127 Chenopodium quinoa HOM05D003776 ORTHO05D004459 0.0e+00 1522.3 1428 58.3
BraA07t29494Z Brassica rapa HOM05D003776 ORTHO05D004459 0.0e+00 1512.3 1459 55.9
Thhalv10002339m.g Eutrema salsugineum HOM05D003776 ORTHO05D004459 0.0e+00 1508.8 1421 56.8
MELO3C004510.2 Cucumis melo HOM05D003776 ORTHO05D004459 0.0e+00 1501.9 1554 52.6
A07p17720 Brassica napus HOM05D003776 ORTHO05D004459 0.0e+00 1490.7 1427 56.3
C07p25670 Brassica napus HOM05D003776 ORTHO05D004459 0.0e+00 1488.8 1427 56.1
BolC7t43085H Brassica oleracea HOM05D003776 ORTHO05D004459 0.0e+00 1484.2 1428 56.0
VMungo1309G0107 Vigna mungo HOM05D003776 ORTHO05D004459 0.0e+00 1469.9 1859 47.4
Aa31LG5G9110 Aethionema arabicum HOM05D003776 ORTHO05D004459 0.0e+00 1456.8 1424 55.3
Zm00001eb235620 Zea mays HOM05D003776 ORTHO05D004459 0.0e+00 1324.3 1281 54.4
ATR0322G072 Amborella trichopoda HOM05D003776 ORTHO05D004459 0.0e+00 1240.3 1124 58.4
Os02g0202250 Oryza sativa ssp. japonica HOM05D003776 ORTHO05D004459 0.0e+00 1161.4 1213 51.4
Pp3c4_20350 Physcomitrium patens HOM05D003776 ORTHO05D004459 0.0e+00 1149.0 1378 45.9
arahy.Tifrunner.gnm1.ann1.GK8SHH Arachis hypogaea HOM05D003776 ORTHO05D004459 0.0e+00 1133.2 941 63.3
Oeu055885.1 Olea europaea HOM05D003776 ORTHO05D004459 0.0e+00 1121.3 943 64.2
Mapoly0052s0095 Marchantia polymorpha HOM05D003776 ORTHO05D004459 0.0e+00 1117.1 1367 45.8
AagrBONN_evm.TU.Sc2ySwM_228.87 Anthoceros agrestis HOM05D003776 ORTHO05D004459 0.0e+00 1097.8 1377 45.3
COL.COLO4_35084 Corchorus olitorius HOM05D003776 ORTHO05D004459 1.1e-301 1040.4 729 71.9
CDE02G1576 Ceratophyllum demersum HOM05D003776 ORTHO05D004459 3.3e-293 1012.3 1109 51.7
SMO347G0235 Selaginella moellendorffii HOM05D003776 ORTHO05D004459 2.9e-289 999.2 1377 41.8
Lalb_Chr08g0234811 Lupinus albus HOM05D003776 ORTHO05D004459 2.1e-268 929.9 958 55.0
HPP92_008667 Vanilla planifolia HOM05D003776 ORTHO05D004459 3.1e-267 926.0 1127 48.0
CAN.G816.2 Capsicum annuum HOM05D003776 ORTHO05D004459 7.6e-258 894.8 592 79.9
Ah.09g226230 Amaranthus hybridus HOM05D003776 ORTHO05D004459 3.4e-242 842.8 713 62.7
CBR_g37692 Chara braunii HOM05D003776 ORTHO05D004459 8.7e-230 801.6 1363 37.0
Actinidia26393 Actinidia chinensis HOM05D003776 ORTHO05D004459 1.1e-221 774.6 1324 40.0
RcHm_v2.0_Chr2g0152361 Rosa chinensis HOM05D003776 ORTHO05D004459 3.6e-207 726.5 1073 44.6
Duzib187G1323 Durio zibethinus HOM05D003776 ORTHO05D004459 1.7e-201 707.6 673 57.4
RcHm_v2.0_Chr2g0152391 Rosa chinensis HOM05D003776 ORTHO05D004459 1.3e-196 691.4 1065 42.9
Ah.09g226220 Amaranthus hybridus HOM05D003776 ORTHO05D004459 4.5e-186 656.4 689 52.8
Lalb_Chr08g0234831 Lupinus albus HOM05D003776 ORTHO05D004459 4.5e-178 629.8 382 78.8
vmacro22117 Vaccinium macrocarpon HOM05D003776 ORTHO05D004459 1.7e-169 601.3 446 70.0
Cpa.g.sc75.31 Carica papaya HOM05D003776 ORTHO05D004459 1.7e-161 574.7 490 61.6
SEGI_34338 Sequoiadendron giganteum HOM05D003776 ORTHO05D004459 8.3e-156 555.8 698 45.4
Hma1.2p1_0018F.1_g012430 Hydrangea macrophylla HOM05D003776 ORTHO05D004459 9.0e-142 509.2 495 57.4
Pp3c20_13260 Physcomitrium patens HOM05D003776 ORTHO05D004459 4.9e-140 503.4 600 47.3
FvH4_6g38790 Fragaria vesca HOM05D003776 ORTHO05D004459 3.3e-136 490.7 565 50.6
Pp3c23_3420 Physcomitrium patens HOM05D003776 ORTHO05D004459 9.6e-136 489.2 581 46.1
CDE02G1439 Ceratophyllum demersum HOM05D003776 ORTHO05D004459 9.3e-131 472.6 319 69.9
HPP92_008649 Vanilla planifolia HOM05D003776 ORTHO05D004459 3.4e-125 454.1 324 67.3
unitig_26.g8982 Utricularia gibba HOM05D003776 ORTHO05D004459 4.9e-124 450.3 317 69.7
Cpa.g.sc75.30 Carica papaya HOM05D003776 ORTHO05D004459 1.0e-105 389.4 399 56.6
arahy.Tifrunner.gnm1.ann1.6DBV70 Arachis hypogaea HOM05D003776 ORTHO05D004459 1.1e-94 352.8 423 48.9
Hma1.2p1_0018F.1_g012440 Hydrangea macrophylla HOM05D003776 ORTHO05D004459 4.1e-94 350.9 215 80.5
Oeu055886.1 Olea europaea HOM05D003776 ORTHO05D004459 4.7e-82 310.8 293 59.7
Hma1.2p1_2368F.1_g320720 Hydrangea macrophylla HOM05D003776 ORTHO05D004459 1.5e-80 305.8 310 53.9
Psat0s3979g0040 Pisum sativum HOM05D003776 ORTHO05D004459 8.3e-79 300.1 332 53.0
FAN19G2182 Fragaria x ananassa HOM05D003776 ORTHO05D004459 1.2e-77 296.2 208 70.2
Peaxi162Scf00574g00927 Petunia axillaris HOM05D003776 ORTHO05D004459 7.7e-77 293.5 296 58.8
Lsat_1_v5_gn_7_7080 Lactuca sativa HOM05D003776 ORTHO05D004459 4.9e-71 274.2 254 57.1
HPP92_008648 Vanilla planifolia HOM05D003776 ORTHO05D004459 1.4e-62 246.1 342 44.7
Ca_29538_v3 Cicer arietinum L. HOM05D003776 ORTHO05D004459 7.3e-51 207.2 263 46.8
Actinidia07427 Actinidia chinensis HOM05D003776 ORTHO05D004459 1.3e-44 186.4 168 57.7
RcHm_v2.0_Chr4g0403131 Rosa chinensis HOM05D003776 ORTHO05D004459 5.8e-40 171.0 219 47.9
RcHm_v2.0_Chr4g0403161 Rosa chinensis HOM05D003776 ORTHO05D004459 5.8e-40 171.0 219 47.9
FvH4_6g38782 Fragaria vesca HOM05D003776 ORTHO05D004459 6.4e-39 167.5 322 37.0
Psat0s1308g0040 Pisum sativum HOM05D002636 ORTHO05D004459 6.4e-39 167.5 121 71.9
Lsat_1_v5_gn_5_62781 Lactuca sativa HOM05D003776 ORTHO05D004459 9.2e-38 163.7 254 38.6
SEGI_13925 Sequoiadendron giganteum HOM05D003776 ORTHO05D004459 2.3e-36 159.1 122 59.0
Zm00001eb121860 Zea mays HOM05D003776 ORTHO05D005656 9.9e-32 143.7 138 53.6
Psat5g250280 Pisum sativum HOM05D003776 ORTHO05D004459 3.8e-31 141.7 135 57.8
Cpa.g.c42453 Carica papaya HOM05D003776 ORTHO05D004459 4.2e-30 138.3 82 80.5
Lsat_1_v5_gn_3_39400 Lactuca sativa HOM05D003776 ORTHO05D004459 3.0e-28 132.1 175 46.3
MCO11G810 Micromonas commoda HOM05D003776 ORTHO05D004459 8.7e-28 130.6 421 27.1
ECA246G1679 Erigeron canadensis HOM05D003776 ORTHO05D004459 1.6e-26 126.3 225 39.1
Cpa.g.c37328 Carica papaya HOM05D003776 ORTHO05D004459 2.8e-26 125.6 75 81.3
RcHm_v2.0_Chr3g0479611 Rosa chinensis HOM05D003776 ORTHO05D004459 1.4e-25 123.2 100 61.0
RcHm_v2.0_Chr5g0007291 Rosa chinensis HOM05D003776 ORTHO05D004459 2.4e-25 122.5 77 77.9
ATR0322G071 Amborella trichopoda HOM05D003776 ORTHO05D004459 1.6e-21 109.8 80 62.5
ATR0322G028 Amborella trichopoda HOM05D003776 ORTHO05D004459 1.0e-20 107.1 147 43.5
MD16G1253500 Malus domestica HOM05D003776 ORTHO05D004459 1.3e-20 106.7 105 54.3
Cre13.g578100 Chlamydomonas reinhardtii HOM05D003776 ORTHO05D004459 8.7e-20 104.0 478 26.2
Psat7g006280 Pisum sativum HOM05D003776 ORTHO05D004459 1.6e-18 99.8 73 67.1
RcHm_v2.0_Chr5g0007211 Rosa chinensis HOM05D003776 ORTHO05D004459 1.1e-17 97.1 57 82.5
arahy.Tifrunner.gnm1.ann1.HIW0J1 Arachis hypogaea HOM05D003776 ORTHO05D004459 4.5e-16 91.7 79 59.5
CAN.G1024.1 Capsicum annuum HOM05D003776 ORTHO05D002238 7.6e-16 90.9 127 45.7
PSO478G0731 Papaver somniferum HOM05D003776 ORTHO05D004459 3.9e-12 78.6 70 65.7
CAN.G1616.4 Capsicum annuum HOM05D003776 ORTHO05D004459 4.3e-11 75.1 52 76.9
Prupe.1G010000 Prunus persica HOM05D003776 ORTHO05D004459 4.3e-11 75.1 61 65.6
RcHm_v2.0_Chr5g0007331 Rosa chinensis HOM05D003776 ORTHO05D004459 9.6e-11 73.9 121 38.8
MBI13_g38968_MAGBIO Magnolia biondii HOM05D003776 ORTHO05D004459 2.8e-10 72.4 63 57.1
SalBow1G5037 Salvia bowleyana HOM05D001898 ORTHO05D002580 1.8e-09 69.7 37 81.1
SEGI_04425 Sequoiadendron giganteum HOM05D003776 ORTHO05D004459 3.1e-09 68.9 73 49.3
SEGI_19045 Sequoiadendron giganteum HOM05D003776 ORTHO05D004459 2.6e-08 65.9 67 50.7
SEGI_27908 Sequoiadendron giganteum HOM05D003776 ORTHO05D004459 4.5e-08 65.1 50 60.0
MBI06_g09275_MAGBIO Magnolia biondii HOM05D003776 ORTHO05D004459 1.0e-07 63.9 63 50.8
CBR_g76107 Chara braunii HOM05D003776 ORTHO05D004459 2.9e-07 62.4 64 45.3
SEGI_26904 Sequoiadendron giganteum HOM05D000464 ORTHO05D006292 2.9e-07 62.4 77 44.2
Sed0006485 Sechium edule HOM05D003776 ORTHO05D004459 4.9e-07 61.6 49 63.3
RcHm_v2.0_Chr5g0007271 Rosa chinensis HOM05D003776 ORTHO05D004459 6.5e-07 61.2 41 68.3
SalBow8G3232 Salvia bowleyana HOM05D002512 ORTHO05D002660 8.4e-07 60.8 34 76.5


User provided reference genes

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