Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0008759g0010 Nicotiana tabacum HOM05D005762 ORTHO05D006823 2.7e-49 198.4 100 100.0
Nitab4.5_0000032g0060 Nicotiana tabacum HOM05D005762 ORTHO05D006823 7.3e-39 163.7 84 97.6
Sopen04g027270 Solanum pennellii HOM05D005762 ORTHO05D006823 7.1e-34 147.1 97 79.4
PGSC0003DMG400024111 Solanum tuberosum HOM05D005762 ORTHO05D006823 7.1e-34 147.1 97 79.4
Solyc04g071310.3 Solanum lycopersicum HOM05D005762 ORTHO05D006823 3.5e-33 144.8 97 78.4
CAN.G268.6 Capsicum annuum HOM05D005762 ORTHO05D006823 7.8e-33 143.7 97 79.4
Peaxi162Scf00765g00313 Petunia axillaris HOM05D005762 ORTHO05D006823 1.5e-28 129.4 87 81.6
SalBow7G3475 Salvia bowleyana HOM05D005762 ORTHO05D006823 2.5e-23 112.1 87 70.1
HanXRQChr09g0244521 Helianthus annuus HOM05D005762 ORTHO05D006823 1.3e-22 109.8 98 60.2
SGA_v2.0_scaffold118G32537 Striga asiatica HOM05D005762 ORTHO05D006823 3.6e-22 108.2 83 68.7
Lsat_1_v5_gn_7_49601 Lactuca sativa HOM05D005762 ORTHO05D006823 6.9e-21 104.0 91 61.5
SGA_v2.0_scaffold69G23111 Striga asiatica HOM05D005762 ORTHO05D006823 3.4e-20 101.7 83 65.1
HanXRQChr03g0066031 Helianthus annuus HOM05D005762 ORTHO05D006823 5.8e-20 100.9 91 60.4
MSTRG.25456 Avicennia marina HOM05D005762 ORTHO05D006823 9.9e-20 100.1 86 66.3
Lj9A721G60 Lonicera japonica HOM05D005762 ORTHO05D006823 9.9e-20 100.1 90 63.3
Eucgr.C02513 Eucalyptus grandis HOM05D005762 ORTHO05D006823 2.9e-19 98.6 88 62.5
Eucgr.L01546 Eucalyptus grandis HOM05D005762 ORTHO05D006823 2.9e-19 98.6 88 62.5
Prupe.7G266400 Prunus persica HOM05D005762 ORTHO05D006823 1.4e-18 96.3 90 61.1
MELO3C010201.2 Cucumis melo HOM05D005762 ORTHO05D006823 1.9e-18 95.9 81 63.0
arahy.Tifrunner.gnm1.ann1.0D8FTQ Arachis hypogaea HOM05D005762 ORTHO05D006823 4.2e-18 94.7 82 64.6
Lj2g0011355 Lotus japonicus HOM05D005762 ORTHO05D006823 4.2e-18 94.7 103 54.4
Lj2g0017040 Lotus japonicus HOM05D005762 ORTHO05D006823 4.2e-18 94.7 84 64.3
Sed0006648 Sechium edule HOM05D005762 ORTHO05D006823 5.4e-18 94.4 82 61.0
Lalb_Chr16g0380631 Lupinus albus HOM05D005762 ORTHO05D006823 7.1e-18 94.0 83 65.1
Rhsim01G0024500 Rhododendron simsii HOM05D005762 ORTHO05D006823 7.1e-18 94.0 86 58.1
Cc00_g06610 Coffea canephora HOM05D005762 ORTHO05D006823 1.2e-17 93.2 85 61.2
unitig_0.g206 Utricularia gibba HOM05D005762 ORTHO05D006823 1.2e-17 93.2 83 59.0
arahy.Tifrunner.gnm1.ann1.3SV7H4 Arachis hypogaea HOM05D005762 ORTHO05D006823 2.1e-17 92.4 82 63.4
Haze_19144 Corylus avellana HOM05D005762 ORTHO05D006823 2.1e-17 92.4 84 58.3
Hma1.2p1_0222F.1_g093870 Hydrangea macrophylla HOM05D005762 ORTHO05D006823 3.5e-17 91.7 85 56.5
Rhsim03G0259100 Rhododendron simsii HOM05D005762 ORTHO05D006823 4.6e-17 91.3 81 59.3
ClCG06G012630 Citrullus lanatus HOM05D005762 ORTHO05D006823 6.0e-17 90.9 81 60.5
PSO761G0310 Papaver somniferum HOM05D005762 ORTHO05D006823 6.0e-17 90.9 75 61.3
Dinv41344 Davidia involucrata HOM05D005762 ORTHO05D006823 7.9e-17 90.5 92 52.2
Duzib147G0575 Durio zibethinus HOM05D005762 ORTHO05D006823 1.0e-16 90.1 91 56.0
CSS0036647 Camellia sinensis var. sinensis HOM05D005762 ORTHO05D006823 1.3e-16 89.7 103 53.4
COL.COLO4_27292 Corchorus olitorius HOM05D005762 ORTHO05D006823 1.8e-16 89.4 87 57.5
Gorai.008G090500 Gossypium raimondii HOM05D005762 ORTHO05D006823 2.3e-16 89.0 91 54.9
Sed0007428 Sechium edule HOM05D005762 ORTHO05D006823 3.0e-16 88.6 81 58.0
DCAR_014801 Daucus carota HOM05D005762 ORTHO05D006823 5.1e-16 87.8 78 55.1
Gohir.D12G082500 Gossypium hirsutum HOM05D005762 ORTHO05D006823 5.1e-16 87.8 85 56.5
vmacro13054 Vaccinium macrocarpon HOM05D006258 ORTHO05D007961 5.1e-16 87.8 80 60.0
Cfa020788 Carpinus fangiana HOM05D005762 ORTHO05D006823 6.7e-16 87.4 81 55.6
Thecc.01G095900 Theobroma cacao HOM05D005762 ORTHO05D006823 8.7e-16 87.0 91 53.8
TWI34G1522 Tripterygium wilfordii HOM05D005762 ORTHO05D006823 8.7e-16 87.0 87 56.3
TAR625G0504 Trochodendron aralioides HOM05D005762 ORTHO05D006823 1.5e-15 86.3 86 53.5
VMungo1215G2009 Vigna mungo HOM05D005762 ORTHO05D006823 1.9e-15 85.9 90 56.7
Gohir.A12G083500 Gossypium hirsutum HOM05D005762 ORTHO05D006823 2.5e-15 85.5 85 55.3
DCAR_019992 Daucus carota HOM05D005762 ORTHO05D006823 3.3e-15 85.1 90 53.3
Dinv42823 Davidia involucrata HOM05D005762 ORTHO05D006823 3.3e-15 85.1 92 50.0
Dinv43277 Davidia involucrata HOM05D005762 ORTHO05D006823 3.3e-15 85.1 92 50.0
Migut.C01281 Erythranthe guttata HOM05D005762 ORTHO05D006823 4.3e-15 84.7 85 57.6
Psat1g057520 Pisum sativum HOM05D005762 ORTHO05D006823 5.6e-15 84.3 83 62.7
PSO170G6399 Papaver somniferum HOM05D005762 ORTHO05D006823 7.4e-15 84.0 99 49.5
Phvul.004G044600 Phaseolus vulgaris HOM05D005762 ORTHO05D006823 7.4e-15 84.0 89 55.1
HPP92_021390 Vanilla planifolia HOM05D005762 ORTHO05D006823 7.4e-15 84.0 87 55.2
Glyma.19G036900 Glycine max HOM05D005762 ORTHO05D006823 9.6e-15 83.6 83 59.0
GSVIVG01023684001 Vitis vinifera HOM05D005762 ORTHO05D006823 9.6e-15 83.6 83 53.0
ATR0767G248 Amborella trichopoda HOM05D005762 ORTHO05D006823 1.3e-14 83.2 77 59.7
Dinv09756 Davidia involucrata HOM05D000667 ORTHO05D002614 1.3e-14 83.2 85 51.8
PSO357G0319 Papaver somniferum HOM05D005762 ORTHO05D006823 1.3e-14 83.2 99 48.5
TWI63G0575 Tripterygium wilfordii HOM05D005762 ORTHO05D006823 1.3e-14 83.2 87 55.2
Lalb_Chr05g0215351 Lupinus albus HOM05D005762 ORTHO05D006823 2.1e-14 82.4 76 59.2
Manes.14G112900 Manihot esculenta HOM05D005762 ORTHO05D006823 2.8e-14 82.0 84 54.8
Os11g0473100 Oryza sativa ssp. japonica HOM05D005762 ORTHO05D006823 4.8e-14 81.3 87 54.0
Atru.chr7.1163 Acer truncatum HOM05D005762 ORTHO05D006823 6.2e-14 80.9 91 53.8
unitig_60.g25712 Utricularia gibba HOM05D005762 ORTHO05D006823 6.2e-14 80.9 72 61.1
CDE02G2562 Ceratophyllum demersum HOM05D005762 ORTHO05D006823 8.1e-14 80.5 99 48.5
Os06g0171700 Oryza sativa ssp. japonica HOM05D005762 ORTHO05D006823 1.1e-13 80.1 88 53.4
Actinidia24370 Actinidia chinensis HOM05D000058 ORTHO05D000077 1.4e-13 79.7 86 50.0
Zm00001eb215170 Zea mays HOM05D005762 ORTHO05D006823 1.4e-13 79.7 89 52.8
Zm00001eb375400 Zea mays HOM05D005762 ORTHO05D006823 1.4e-13 79.7 89 52.8
Aqoxy6G02656 Aquilegia oxysepala HOM05D005762 ORTHO05D006823 2.4e-13 79.0 84 50.0
Ciclev10009604m.g Citrus clementina HOM05D005762 ORTHO05D006823 3.1e-13 78.6 76 53.9
CDE06G1965 Ceratophyllum demersum HOM05D005762 ORTHO05D006823 4.0e-13 78.2 99 47.5
ECA240G2400 Erigeron canadensis HOM05D006258 ORTHO05D007961 3.4e-12 75.1 81 53.1
CiPaw.16G107100 Carya illinoinensis HOM05D005762 ORTHO05D006823 4.5e-12 74.7 84 50.0
Sc18g0003110 Simmondsia chinensis HOM05D005762 ORTHO05D006823 4.5e-12 74.7 82 56.1
Cpa.g.sc199.22 Carica papaya HOM05D005762 ORTHO05D006823 7.6e-12 73.9 84 46.4
PGR102G1062 Punica granatum HOM05D005762 ORTHO05D006823 1.0e-11 73.6 78 48.7
Sabra18G0088700 Salix brachista HOM05D000058 ORTHO05D000077 1.0e-11 73.6 86 48.8
Potri.018G103200 Populus trichocarpa HOM05D005762 ORTHO05D006823 1.7e-11 72.8 105 45.7
vmacro06054 Vaccinium macrocarpon HOM05D005762 ORTHO05D006823 3.8e-11 71.6 76 51.3
QL02p094110 Quercus lobata HOM05D005762 ORTHO05D006823 4.9e-11 71.2 82 47.6
MBI02_g32399_MAGBIO Magnolia biondii HOM05D005762 ORTHO05D006823 6.5e-11 70.9 124 38.7
AagrBONN_evm.TU.Sc2ySwM_344.3285 Anthoceros agrestis HOM05D005762 ORTHO05D006823 1.1e-10 70.1 88 48.9
Medtr6g006900 Medicago truncatula HOM05D005762 ORTHO05D006823 1.4e-10 69.7 80 50.0
Potri.006G180900 Populus trichocarpa HOM05D005762 ORTHO05D006823 1.4e-10 69.7 100 45.0
SHI02837 Sapria himalayana HOM05D005762 ORTHO05D006823 1.4e-10 69.7 84 48.8
Sabra06G0137900 Salix brachista HOM05D005762 ORTHO05D006823 1.9e-10 69.3 104 46.2
SEGI_01916 Sequoiadendron giganteum HOM05D005762 ORTHO05D006823 1.9e-10 69.3 84 52.4
MD15G1148500 Malus domestica HOM05D005762 ORTHO05D006823 2.5e-10 68.9 55 61.8
Ca_04188_v3 Cicer arietinum L. HOM05D005762 ORTHO05D006823 5.5e-10 67.8 82 52.4
Nn8g40046 Nelumbo nucifera HOM05D005762 ORTHO05D006823 5.5e-10 67.8 91 47.3
SMO356G0316 Selaginella moellendorffii HOM05D005762 ORTHO05D006823 5.5e-10 67.8 73 49.3
THA.LOC104804493 Tarenaya hassleriana HOM05D005762 ORTHO05D006823 5.5e-10 67.8 97 45.4
THA.LOC104814737 Tarenaya hassleriana HOM05D005762 ORTHO05D006823 5.5e-10 67.8 97 45.4
TPR.G14135 Trifolium pratense HOM05D005762 ORTHO05D006823 1.6e-09 66.2 80 48.8
CANSAT11G0529 Cannabis sativa HOM05D005762 ORTHO05D006823 2.1e-09 65.9 44 65.9
Mapoly0025s0086 Marchantia polymorpha HOM05D005762 ORTHO05D006823 2.1e-09 65.9 83 45.8
BcaB03g12662 Brassica carinata HOM05D005762 ORTHO05D006823 2.7e-09 65.5 107 45.8
FvH4_1g00560 Fragaria vesca HOM05D005762 ORTHO05D006823 2.7e-09 65.5 86 46.5
BcaNung02738 Brassica carinata HOM05D005762 ORTHO05D006823 1.0e-08 63.5 108 41.7
CSS0014952 Camellia sinensis var. sinensis HOM05D005762 ORTHO05D006823 1.3e-08 63.2 41 65.9
Sp7g28690 Schrenkiella parvula HOM05D005762 ORTHO05D006823 1.8e-08 62.8 105 45.7
BcaC01g01136 Brassica carinata HOM05D005762 ORTHO05D006823 3.0e-08 62.0 39 76.9
A08p19060 Brassica napus HOM05D005762 ORTHO05D006823 3.0e-08 62.0 39 76.9
C03p88490 Brassica napus HOM05D005762 ORTHO05D006823 3.0e-08 62.0 39 76.9
BolC3t21157H Brassica oleracea HOM05D005762 ORTHO05D006823 3.0e-08 62.0 39 76.9
BraA08t33867Z Brassica rapa HOM05D005762 ORTHO05D006823 3.0e-08 62.0 39 76.9
FAN26G0640 Fragaria x ananassa HOM05D005762 ORTHO05D006823 3.9e-08 61.6 87 43.7
RcHm_v2.0_Chr2g0085191 Rosa chinensis HOM05D005762 ORTHO05D006823 5.1e-08 61.2 39 69.2
Thhalv10026542m.g Eutrema salsugineum HOM05D005762 ORTHO05D006823 6.7e-08 60.8 65 56.9
Pp3c7_18190 Physcomitrium patens HOM05D005762 ORTHO05D006823 8.7e-08 60.5 93 41.9
CARHR238660 Cardamine hirsuta HOM05D005762 ORTHO05D006823 2.5e-07 58.9 92 43.5
AL7G21310 Arabidopsis lyrata HOM05D005762 ORTHO05D006823 3.3e-07 58.5 87 49.4
AT4G30820 Arabidopsis thaliana HOM05D005762 ORTHO05D006823 1.6e-06 56.2 85 45.9
C07p58230 Brassica napus HOM05D000058 ORTHO05D000077 1.6e-06 56.2 39 66.7
BolC7t46281H Brassica oleracea HOM05D000058 ORTHO05D000077 1.6e-06 56.2 39 66.7
Aa31LG2G19570 Aethionema arabicum HOM05D005762 ORTHO05D006823 2.1e-06 55.8 86 47.7
A03p60360 Brassica napus HOM05D005762 ORTHO05D006823 2.1e-06 55.8 39 66.7
BraA03t15075Z Brassica rapa HOM05D005762 ORTHO05D006823 2.1e-06 55.8 39 66.7
PSO357G0231 Papaver somniferum HOM05D005762 ORTHO05D006823 2.8e-06 55.5 41 58.5
BcaNung01558 Brassica carinata HOM05D005762 ORTHO05D006823 3.7e-06 55.1 39 64.1


User provided reference genes

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