Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0008686g0040 Nicotiana tabacum HOM05D005990 ORTHO05D007908 3.4e-198 694.9 375 100.0
Nitab4.5_0000297g0120 Nicotiana tabacum HOM05D005990 ORTHO05D007908 1.5e-174 616.3 374 91.4
Sopen07g031750 Solanum pennellii HOM05D005990 ORTHO05D007908 2.0e-166 589.3 369 87.3
PGSC0003DMG402019249 Solanum tuberosum HOM05D005990 ORTHO05D007908 1.3e-165 586.6 369 86.7
Solyc07g063570.4 Solanum lycopersicum HOM05D005990 ORTHO05D007908 2.2e-165 585.9 369 87.0
Dinv22366 Davidia involucrata HOM05D005990 ORTHO05D007908 4.3e-132 475.3 314 80.3
CiPaw.11G176500 Carya illinoinensis HOM05D005990 ORTHO05D007908 2.3e-130 469.5 328 79.0
Manes.03G116500 Manihot esculenta HOM05D005990 ORTHO05D007908 8.3e-128 461.1 338 73.7
Potri.001G406700 Populus trichocarpa HOM05D005990 ORTHO05D007908 3.2e-127 459.1 338 74.3
QL08p018038 Quercus lobata HOM05D005990 ORTHO05D007908 3.2e-127 459.1 327 76.5
CSS0030462 Camellia sinensis var. sinensis HOM05D005990 ORTHO05D007908 2.0e-126 456.4 287 83.6
Actinidia35278 Actinidia chinensis HOM05D005990 ORTHO05D007908 3.5e-126 455.7 314 76.4
TAR626G1157 Trochodendron aralioides HOM05D005990 ORTHO05D007908 4.6e-126 455.3 328 76.2
Cfa020505 Carpinus fangiana HOM05D005990 ORTHO05D007908 1.3e-125 453.8 329 75.4
CsaV3_3G005970 Cucumis sativus L. HOM05D005990 ORTHO05D007908 3.9e-125 452.2 354 69.8
Peaxi162Scf01216g00051 Petunia axillaris HOM05D005990 ORTHO05D007908 5.0e-125 451.8 282 88.7
PGR031G1979 Punica granatum HOM05D005990 ORTHO05D007908 6.6e-125 451.4 329 75.4
RcHm_v2.0_Chr5g0035361 Rosa chinensis HOM05D005990 ORTHO05D007908 6.6e-125 451.4 320 77.2
Prupe.4G189900 Prunus persica HOM05D005990 ORTHO05D007908 8.6e-125 451.1 315 78.1
Sed0021962 Sechium edule HOM05D005990 ORTHO05D007908 1.1e-124 450.7 291 82.1
MELO3C016553.2 Cucumis melo HOM05D005990 ORTHO05D007908 1.9e-124 449.9 335 72.2
ClCG10G006520 Citrullus lanatus HOM05D005990 ORTHO05D007908 3.3e-124 449.1 300 79.7
Cpa.g.sc80.114 Carica papaya HOM05D005990 ORTHO05D007908 4.3e-124 448.7 320 77.2
Duzib213G0189 Durio zibethinus HOM05D005990 ORTHO05D007908 5.6e-124 448.4 314 77.1
Lsat_1_v5_gn_5_6860 Lactuca sativa HOM05D005990 ORTHO05D007908 2.1e-123 446.4 325 75.4
ECA246G2706 Erigeron canadensis HOM05D005990 ORTHO05D007908 3.6e-123 445.7 291 82.1
RhsimUnG0258900 Rhododendron simsii HOM05D005990 ORTHO05D007908 6.2e-123 444.9 330 73.0
Gohir.D13G148400 Gossypium hirsutum HOM05D005990 ORTHO05D007908 1.1e-122 444.1 315 77.1
Gorai.013G166200 Gossypium raimondii HOM05D005990 ORTHO05D007908 1.1e-122 444.1 315 77.1
Gohir.A13G143600 Gossypium hirsutum HOM05D005990 ORTHO05D007908 1.4e-122 443.7 315 77.1
MD11G1237300 Malus domestica HOM05D005990 ORTHO05D007908 3.1e-122 442.6 320 76.9
GSVIVG01014430001 Vitis vinifera HOM05D005990 ORTHO05D007908 4.0e-122 442.2 317 76.0
Sabra16G0268100 Salix brachista HOM05D005990 ORTHO05D007908 6.8e-122 441.4 337 72.7
Sabra16G0270400 Salix brachista HOM05D005990 ORTHO05D007908 6.8e-122 441.4 337 72.7
HanXRQChr05g0156471 Helianthus annuus HOM05D005990 ORTHO05D007908 8.9e-122 441.0 315 77.1
Thecc.07G071400 Theobroma cacao HOM05D005990 ORTHO05D007908 1.5e-121 440.3 357 70.3
Aqoxy4G01398 Aquilegia oxysepala HOM05D005990 ORTHO05D007908 2.0e-121 439.9 322 74.2
Glyma.06G254100 Glycine max HOM05D005990 ORTHO05D007908 5.8e-121 438.3 336 72.6
COL.COLO4_09478 Corchorus olitorius HOM05D005990 ORTHO05D007908 9.8e-121 437.6 297 79.8
Nn1g06745 Nelumbo nucifera HOM05D005990 ORTHO05D007908 9.8e-121 437.6 315 76.8
Ciclev10009149m.g Citrus clementina HOM05D005990 ORTHO05D007908 1.7e-120 436.8 264 86.4
Glyma.12G147300 Glycine max HOM05D005990 ORTHO05D007908 2.2e-120 436.4 336 72.3
VMungo1127G2019 Vigna mungo HOM05D005990 ORTHO05D007908 2.9e-120 436.0 293 80.2
Migut.M01860 Erythranthe guttata HOM05D005990 ORTHO05D007908 3.7e-120 435.6 293 79.9
Lj3g0001925 Lotus japonicus HOM05D005990 ORTHO05D007908 4.9e-120 435.3 339 72.6
Cc05_g12670 Coffea canephora HOM05D005990 ORTHO05D007908 6.4e-120 434.9 318 75.8
MSTRG.15206 Avicennia marina HOM05D005990 ORTHO05D007908 1.1e-119 434.1 320 74.7
FvH4_3g20940 Fragaria vesca HOM05D005990 ORTHO05D007908 4.1e-119 432.2 323 74.9
FAN11G3728 Fragaria x ananassa HOM05D005990 ORTHO05D007908 5.4e-119 431.8 317 75.7
Sp6g16330 Schrenkiella parvula HOM05D005990 ORTHO05D007908 7.1e-119 431.4 338 72.5
Hma1.2p1_1143F.1_g261060 Hydrangea macrophylla HOM05D005990 ORTHO05D007908 9.2e-119 431.0 263 85.9
PSO210G5100 Papaver somniferum HOM05D005990 ORTHO05D007908 1.2e-118 430.6 300 78.7
CANSAT11G2493 Cannabis sativa HOM05D005990 ORTHO05D007908 1.6e-118 430.3 335 72.5
Atru.chr2.2820 Acer truncatum HOM05D005990 ORTHO05D007908 4.6e-118 428.7 298 78.5
Thhalv10013940m.g Eutrema salsugineum HOM05D005990 ORTHO05D007908 4.6e-118 428.7 320 75.9
Lj8A160T67 Lonicera japonica HOM05D005990 ORTHO05D007908 4.6e-118 428.7 267 84.3
C02p17170 Brassica napus HOM05D005990 ORTHO05D007908 1.0e-117 427.6 341 71.3
Aa31LG3G10250 Aethionema arabicum HOM05D005990 ORTHO05D007908 1.3e-117 427.2 287 81.2
AT5G54290 Arabidopsis thaliana HOM05D005990 ORTHO05D007908 1.3e-117 427.2 340 71.5
BcaC03g14345 Brassica carinata HOM05D005990 ORTHO05D007908 1.3e-117 427.2 343 70.3
CARHR267580 Cardamine hirsuta HOM05D005990 ORTHO05D007908 1.3e-117 427.2 338 71.0
unitig_46.g18327 Utricularia gibba HOM05D005990 ORTHO05D007908 1.3e-117 427.2 295 77.3
Lalb_Chr01g0006431 Lupinus albus HOM05D005990 ORTHO05D007908 2.3e-117 426.4 317 74.4
Phvul.011G155100 Phaseolus vulgaris HOM05D005990 ORTHO05D007908 3.9e-117 425.6 334 70.7
CDE05G0179 Ceratophyllum demersum HOM05D005990 ORTHO05D007908 5.1e-117 425.2 295 78.3
AUR62029313 Chenopodium quinoa HOM05D005990 ORTHO05D007908 5.1e-117 425.2 273 82.4
CAN.G162.104 Capsicum annuum HOM05D005990 ORTHO05D007908 6.6e-117 424.9 302 79.8
Ca_11848_v3 Cicer arietinum L. HOM05D005990 ORTHO05D007908 6.6e-117 424.9 284 79.6
A02p10420 Brassica napus HOM05D005990 ORTHO05D007908 1.5e-116 423.7 343 69.7
THA.LOC104811848 Tarenaya hassleriana HOM05D005990 ORTHO05D007908 1.5e-116 423.7 297 76.8
BcaB05g22125 Brassica carinata HOM05D005990 ORTHO05D007908 1.9e-116 423.3 286 80.8
AL8G29620 Arabidopsis lyrata HOM05D005990 ORTHO05D007908 2.5e-116 422.9 301 77.4
Medtr8g464410 Medicago truncatula HOM05D005990 ORTHO05D007908 2.5e-116 422.9 292 78.4
AUR62015602 Chenopodium quinoa HOM05D005990 ORTHO05D007908 1.2e-115 420.6 273 81.3
Sc16g0006780 Simmondsia chinensis HOM05D005990 ORTHO05D007908 2.1e-115 419.9 300 76.3
BolC2t07817H Brassica oleracea HOM05D005990 ORTHO05D007908 3.6e-115 419.1 267 84.3
Carub.0008s1464 Capsella rubella HOM05D005990 ORTHO05D007908 3.6e-115 419.1 294 77.9
BraA02t06108Z Brassica rapa HOM05D005990 ORTHO05D007908 1.1e-114 417.5 364 65.9
Os11g0140800 Oryza sativa ssp. japonica HOM05D005990 ORTHO05D007908 1.1e-114 417.5 288 78.8
ATR0751G163 Amborella trichopoda HOM05D005990 ORTHO05D007908 3.1e-114 416.0 317 72.6
Zm00001eb093260 Zea mays HOM05D005990 ORTHO05D007908 4.4e-113 412.1 286 78.3
Eucgr.F03355 Eucalyptus grandis HOM05D005990 ORTHO05D007908 5.8e-113 411.8 284 78.9
MBI02_g35910_MAGBIO Magnolia biondii HOM05D005990 ORTHO05D007908 2.9e-112 409.5 275 81.5
FAN21G0316 Fragaria x ananassa HOM05D005990 ORTHO05D007908 3.2e-111 406.0 338 69.8
SalBow7G3955 Salvia bowleyana HOM05D005990 ORTHO05D007908 3.5e-110 402.5 390 60.5
HPP92_018217 Vanilla planifolia HOM05D005990 ORTHO05D007908 9.6e-108 394.4 286 74.8
SGA_v2.0_scaffold9G04955 Striga asiatica HOM05D005990 ORTHO05D007908 2.0e-105 386.7 275 76.7
DCAR_008702 Daucus carota HOM05D005990 ORTHO05D007908 2.9e-104 382.9 285 73.7
Haze_09528 Corylus avellana HOM05D005990 ORTHO05D007908 4.2e-103 379.0 295 72.9
TWI38G1683 Tripterygium wilfordii HOM05D005990 ORTHO05D007908 4.2e-103 379.0 279 73.5
QL08p017936 Quercus lobata HOM05D005990 ORTHO05D007908 1.6e-102 377.1 306 69.6
vmacro09559 Vaccinium macrocarpon HOM05D005990 ORTHO05D007908 4.6e-102 375.6 249 79.5
Ah.04g165420 Amaranthus hybridus HOM05D005990 ORTHO05D007908 6.6e-101 371.7 249 80.3
arahy.Tifrunner.gnm1.ann1.3KJ3XQ Arachis hypogaea HOM05D005990 ORTHO05D007908 1.1e-100 370.9 370 61.1
SMO119G0067 Selaginella moellendorffii HOM05D005990 ORTHO05D007908 7.3e-100 368.2 272 72.8
arahy.Tifrunner.gnm1.ann1.NX1DPE Arachis hypogaea HOM05D005990 ORTHO05D007908 1.3e-99 367.5 370 60.8
Mapoly0093s0077 Marchantia polymorpha HOM05D005990 ORTHO05D007908 6.2e-99 365.2 274 72.3
AagrBONN_evm.TU.Sc2ySwM_344.980 Anthoceros agrestis HOM05D005990 ORTHO05D007908 1.2e-97 360.9 253 77.9
EL10Ac4g08059 Beta vulgaris HOM05D005990 ORTHO05D007908 1.5e-97 360.5 326 66.6
FAN16G0288 Fragaria x ananassa HOM05D005990 ORTHO05D007908 4.4e-97 359.0 307 68.4
PSO832G2166 Papaver somniferum HOM05D005990 ORTHO05D007908 5.4e-95 352.1 266 75.2
Oeu055680.2 Olea europaea HOM05D005990 ORTHO05D007908 2.1e-94 350.1 370 59.2
Pp3c15_16730 Physcomitrium patens HOM05D005990 ORTHO05D007908 5.6e-92 342.0 253 71.5
MBI02_g10990_MAGBIO Magnolia biondii HOM05D005990 ORTHO05D007908 1.3e-91 340.9 218 84.4
Hma1.2p1_1143F.1_g261070 Hydrangea macrophylla HOM05D005990 ORTHO05D007908 1.2e-86 324.3 195 86.2
TPR.G39565 Trifolium pratense HOM05D005990 ORTHO05D007908 1.9e-84 317.0 229 76.0
Psat0s617g0120 Pisum sativum HOM05D005990 ORTHO05D007908 2.5e-79 300.1 233 72.5
CBR_g16976 Chara braunii HOM05D005990 ORTHO05D007908 7.1e-79 298.5 260 62.7
Actinidia18746 Actinidia chinensis HOM05D005990 ORTHO05D007908 1.4e-71 274.2 271 60.5
MBI02_g26442_MAGBIO Magnolia biondii HOM05D005990 ORTHO05D007908 3.2e-71 273.1 247 64.0
Cre07.g357800 Chlamydomonas reinhardtii HOM05D005990 ORTHO05D007908 5.7e-68 262.3 260 55.8
PRCOL_00006006 Prasinoderma coloniale HOM05D005990 ORTHO05D007908 2.4e-66 256.9 256 57.0
MCO16G378 Micromonas commoda HOM05D005990 ORTHO05D007908 1.4e-61 241.1 293 50.5
AagrBONN_evm.TU.Sc2ySwM_117.2025 Anthoceros agrestis HOM05D005990 ORTHO05D007908 3.7e-59 233.0 329 49.8
C03p17200 Brassica napus HOM05D005990 ORTHO05D007908 3.7e-59 233.0 230 63.5
BolC3t14134H Brassica oleracea HOM05D005990 ORTHO05D007908 2.7e-54 216.9 249 58.2
Os12g0137300 Oryza sativa ssp. japonica HOM05D005990 ORTHO05D007908 3.3e-52 209.9 170 71.2
BcaC01g06300 Brassica carinata HOM05D005990 ORTHO05D007908 2.5e-47 193.7 140 77.9
SEGI_00968 Sequoiadendron giganteum HOM05D005990 ORTHO05D007908 4.4e-44 183.0 135 77.0
Hma1.2p1_1302F.1_g274280 Hydrangea macrophylla HOM05D005990 ORTHO05D007908 2.1e-38 164.1 98 86.7
Haze_08411 Corylus avellana HOM05D005990 ORTHO05D007908 1.2e-36 158.3 142 67.6
MD03G1219200 Malus domestica HOM05D005990 ORTHO05D007908 1.3e-35 154.8 204 52.9
SEGI_31484 Sequoiadendron giganteum HOM05D005990 ORTHO05D007908 9.1e-34 148.7 93 81.7
CSS0033016 Camellia sinensis var. sinensis HOM05D005990 ORTHO05D043356 2.5e-31 140.6 157 54.1
CSS0043364 Camellia sinensis var. sinensis HOM05D005990 ORTHO05D043356 7.2e-31 139.0 157 53.5
HPP92_027973 Vanilla planifolia HOM05D005990 ORTHO05D007908 4.1e-26 123.2 115 61.7
HPP92_027972 Vanilla planifolia HOM05D005990 ORTHO05D007908 4.4e-20 103.2 80 67.5
Sopen08g023060 Solanum pennellii HOM05D003334 ORTHO05D004076 1.4e-18 98.2 95 66.3
Solyc05g150137.1 Solanum lycopersicum HOM05D005990 ORTHO05D391672 4.6e-17 93.2 60 88.3
HanXRQChr12g0381681 Helianthus annuus HOM05D005990 ORTHO05D221923 8.9e-13 79.0 240 32.1
Sopen10g004100 Solanum pennellii HOM05D005990 ORTHO05D000950 3.2e-10 70.5 41 95.1


User provided reference genes

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