Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0008497g0020 Nicotiana tabacum HOM05D002081 ORTHO05D002088 7.5e-71 270.4 135 100.0
Nitab4.5_0000987g0040 Nicotiana tabacum HOM05D002081 ORTHO05D002088 1.4e-53 213.0 121 90.9
Peaxi162Scf00658g00313 Petunia axillaris HOM05D002081 ORTHO05D002088 2.2e-46 189.1 121 79.3
Hma1.2p1_0039F.1_g024690 Hydrangea macrophylla HOM05D002081 ORTHO05D002088 1.2e-41 173.3 124 72.6
Sopen05g031450 Solanum pennellii HOM05D002081 ORTHO05D002088 3.6e-41 171.8 121 71.9
Solyc05g052930.3 Solanum lycopersicum HOM05D002081 ORTHO05D002088 8.1e-41 170.6 121 71.1
PGSC0003DMG400027135 Solanum tuberosum HOM05D002081 ORTHO05D002088 1.4e-40 169.9 121 70.2
Dinv16263 Davidia involucrata HOM05D002081 ORTHO05D002088 2.0e-39 166.0 121 70.2
TWI15G0806 Tripterygium wilfordii HOM05D002081 ORTHO05D002088 3.4e-39 165.2 122 71.3
TWI38G1695 Tripterygium wilfordii HOM05D002081 ORTHO05D002088 2.2e-38 162.5 122 69.7
GSVIVG01016466001 Vitis vinifera HOM05D002081 ORTHO05D002088 3.8e-38 161.8 121 67.8
CiPaw.01G292200 Carya illinoinensis HOM05D002081 ORTHO05D002088 6.4e-38 161.0 121 66.1
Prupe.2G240900 Prunus persica HOM05D002081 ORTHO05D002088 1.4e-37 159.8 123 66.7
FAN10G0083 Fragaria x ananassa HOM05D002081 ORTHO05D002088 1.9e-37 159.5 123 68.3
FAN03G2328 Fragaria x ananassa HOM05D002081 ORTHO05D002088 2.4e-37 159.1 123 67.5
Actinidia02912 Actinidia chinensis HOM05D002081 ORTHO05D002088 3.2e-37 158.7 121 65.3
FvH4_7g23450 Fragaria vesca HOM05D002081 ORTHO05D002088 3.2e-37 158.7 123 67.5
FAN01G0841 Fragaria x ananassa HOM05D002081 ORTHO05D002088 3.2e-37 158.7 123 67.5
FAN06G3391 Fragaria x ananassa HOM05D002081 ORTHO05D002088 3.2e-37 158.7 123 67.5
FAN06G4322 Fragaria x ananassa HOM05D002081 ORTHO05D002088 3.2e-37 158.7 123 67.5
SalBow6G3476 Salvia bowleyana HOM05D002081 ORTHO05D002088 4.1e-37 158.3 121 65.3
Ciclev10032419m.g Citrus clementina HOM05D002081 ORTHO05D002088 5.4e-37 157.9 121 66.1
Lj8C78T3 Lonicera japonica HOM05D002081 ORTHO05D002088 7.1e-37 157.5 125 68.0
SalBow6G3204 Salvia bowleyana HOM05D002081 ORTHO05D002088 1.2e-36 156.8 121 63.6
RcHm_v2.0_Chr1g0368591 Rosa chinensis HOM05D002081 ORTHO05D002088 1.6e-36 156.4 124 68.5
TAR633G0599 Trochodendron aralioides HOM05D002081 ORTHO05D002088 2.1e-36 156.0 121 64.5
Manes.10G024700 Manihot esculenta HOM05D002081 ORTHO05D002088 2.7e-36 155.6 123 67.5
MSTRG.8286 Avicennia marina HOM05D002081 ORTHO05D002088 1.0e-35 153.7 121 63.6
Haze_17129 Corylus avellana HOM05D002081 ORTHO05D002088 1.7e-35 152.9 121 65.3
Nn2g13497 Nelumbo nucifera HOM05D002081 ORTHO05D002088 2.3e-35 152.5 121 62.0
Rhsim09G0168000 Rhododendron simsii HOM05D002081 ORTHO05D002088 3.0e-35 152.1 121 66.1
Rhsim09G0168900 Rhododendron simsii HOM05D002081 ORTHO05D002088 3.0e-35 152.1 121 66.1
Sc10g0001880 Simmondsia chinensis HOM05D002081 ORTHO05D002088 3.0e-35 152.1 121 65.3
VMungo0647G2156 Vigna mungo HOM05D002081 ORTHO05D002088 3.9e-35 151.8 120 62.5
Cfa001415 Carpinus fangiana HOM05D002081 ORTHO05D002088 6.6e-35 151.0 121 65.3
MD01G1140300 Malus domestica HOM05D002081 ORTHO05D002088 6.6e-35 151.0 124 63.7
PGR142G4126 Punica granatum HOM05D002081 ORTHO05D002088 6.6e-35 151.0 123 61.8
Potri.008G060300 Populus trichocarpa HOM05D002081 ORTHO05D002088 1.1e-34 150.2 123 64.2
vmacro10211 Vaccinium macrocarpon HOM05D002081 ORTHO05D002088 1.1e-34 150.2 122 64.8
CANSAT64G2080 Cannabis sativa HOM05D002081 ORTHO05D002088 2.5e-34 149.1 125 64.0
Glyma.14G065500 Glycine max HOM05D002081 ORTHO05D002088 2.5e-34 149.1 120 61.7
Sed0003628 Sechium edule HOM05D002081 ORTHO05D002088 2.5e-34 149.1 121 61.2
MD07G1204600 Malus domestica HOM05D002081 ORTHO05D002088 3.3e-34 148.7 124 63.7
QL08p061675 Quercus lobata HOM05D002081 ORTHO05D002088 3.3e-34 148.7 123 62.6
EL10Ac2g04688 Beta vulgaris HOM05D002081 ORTHO05D002088 4.3e-34 148.3 121 62.0
Cc02_g07330 Coffea canephora HOM05D002081 ORTHO05D002088 9.6e-34 147.1 124 63.7
MSTRG.261 Avicennia marina HOM05D002081 ORTHO05D002088 2.1e-33 146.0 121 63.6
Eucgr.G02991 Eucalyptus grandis HOM05D002081 ORTHO05D002088 2.1e-33 146.0 121 61.2
Phvul.001G237000 Phaseolus vulgaris HOM05D002081 ORTHO05D002088 2.8e-33 145.6 120 61.7
THA.LOC104808815 Tarenaya hassleriana HOM05D002081 ORTHO05D002088 2.8e-33 145.6 122 64.8
Atru.chr12.309 Acer truncatum HOM05D002081 ORTHO05D002088 6.2e-33 144.4 124 64.5
Atru.chr12.338 Acer truncatum HOM05D002081 ORTHO05D002088 6.2e-33 144.4 124 64.5
Glyma.02G251200 Glycine max HOM05D002081 ORTHO05D002088 6.2e-33 144.4 120 59.2
Potri.010G198300 Populus trichocarpa HOM05D002081 ORTHO05D002088 6.2e-33 144.4 123 62.6
Thecc.10G034500 Theobroma cacao HOM05D002081 ORTHO05D002088 6.2e-33 144.4 124 65.3
CSS0002569 Camellia sinensis var. sinensis HOM05D002081 ORTHO05D002088 8.1e-33 144.1 128 61.7
Atru.chr12.306 Acer truncatum HOM05D002081 ORTHO05D002088 1.1e-32 143.7 124 63.7
CiPaw.02G187300 Carya illinoinensis HOM05D002081 ORTHO05D002088 1.1e-32 143.7 121 60.3
Migut.F01287 Erythranthe guttata HOM05D002081 ORTHO05D002088 1.1e-32 143.7 121 64.5
Peaxi162Scf00164g01416 Petunia axillaris HOM05D002081 ORTHO05D002088 1.1e-32 143.7 121 62.8
AUR62040688 Chenopodium quinoa HOM05D002081 ORTHO05D002088 1.4e-32 143.3 121 61.2
Psat5g128720 Pisum sativum HOM05D002081 ORTHO05D002088 1.4e-32 143.3 120 61.7
CsaV3_6G001420 Cucumis sativus L. HOM05D002081 ORTHO05D002088 2.4e-32 142.5 123 62.6
Phvul.008G230200 Phaseolus vulgaris HOM05D002081 ORTHO05D002088 3.1e-32 142.1 120 60.0
SGA_v2.0_scaffold2G00987 Striga asiatica HOM05D002081 ORTHO05D002088 3.1e-32 142.1 121 62.0
Atru.chr12.302 Acer truncatum HOM05D002081 ORTHO05D002088 5.2e-32 141.4 124 62.9
CAN.G1184.5 Capsicum annuum HOM05D002081 ORTHO05D002088 6.9e-32 141.0 99 71.7
MELO3C008246.2 Cucumis melo HOM05D002081 ORTHO05D002088 6.9e-32 141.0 123 61.8
Lsat_1_v5_gn_8_14680 Lactuca sativa HOM05D002081 ORTHO05D002088 1.2e-31 140.2 120 64.2
arahy.Tifrunner.gnm1.ann1.W8JJXT Arachis hypogaea HOM05D002081 ORTHO05D002088 1.5e-31 139.8 121 58.7
arahy.Tifrunner.gnm1.ann1.YTA3II Arachis hypogaea HOM05D002081 ORTHO05D002088 2.0e-31 139.4 121 58.7
AUR62012147 Chenopodium quinoa HOM05D002081 ORTHO05D002088 2.0e-31 139.4 121 60.3
TAR636G1215 Trochodendron aralioides HOM05D002081 ORTHO05D002088 2.6e-31 139.0 121 59.5
Duzib106G0506 Durio zibethinus HOM05D002081 ORTHO05D002088 3.4e-31 138.7 118 61.9
Medtr3g069150 Medicago truncatula HOM05D002081 ORTHO05D002088 3.4e-31 138.7 123 59.3
Medtr3g069170 Medicago truncatula HOM05D002081 ORTHO05D002088 3.4e-31 138.7 123 59.3
Sed0012888 Sechium edule HOM05D002081 ORTHO05D002088 3.4e-31 138.7 122 59.8
C04p67620 Brassica napus HOM05D002081 ORTHO05D002088 5.8e-31 137.9 127 55.9
BolC4t28261H Brassica oleracea HOM05D002081 ORTHO05D002088 5.8e-31 137.9 127 55.9
BcaB01g03572 Brassica carinata HOM05D002081 ORTHO05D002088 9.9e-31 137.1 128 57.0
Sabra08G0044400 Salix brachista HOM05D002081 ORTHO05D002088 9.9e-31 137.1 124 61.3
BraA03t11462Z Brassica rapa HOM05D002081 ORTHO05D002088 1.3e-30 136.7 128 59.4
CARHR134690 Cardamine hirsuta HOM05D002081 ORTHO05D002088 1.3e-30 136.7 127 56.7
Aa31LG5G19810 Aethionema arabicum HOM05D002081 ORTHO05D002088 1.7e-30 136.3 128 60.9
AT2G39805 Arabidopsis thaliana HOM05D002081 ORTHO05D002088 1.7e-30 136.3 127 56.7
Rhsim03G0136700 Rhododendron simsii HOM05D002081 ORTHO05D002088 1.7e-30 136.3 121 57.0
BcaC01g05463 Brassica carinata HOM05D002081 ORTHO05D002088 2.2e-30 136.0 128 58.6
A03p22300 Brassica napus HOM05D002081 ORTHO05D002088 2.2e-30 136.0 128 58.6
C03p26400 Brassica napus HOM05D002081 ORTHO05D002088 2.2e-30 136.0 128 58.6
COL.COLO4_25522 Corchorus olitorius HOM05D002081 ORTHO05D002088 2.2e-30 136.0 131 56.5
TAR636G1286 Trochodendron aralioides HOM05D002081 ORTHO05D002088 2.2e-30 136.0 121 58.7
BolC3t15026H Brassica oleracea HOM05D002081 ORTHO05D002088 2.9e-30 135.6 128 58.6
Gohir.D10G235900 Gossypium hirsutum HOM05D002081 ORTHO05D002088 3.8e-30 135.2 122 59.0
Gorai.011G269800 Gossypium raimondii HOM05D002081 ORTHO05D002088 3.8e-30 135.2 122 59.0
Nn2g11249 Nelumbo nucifera HOM05D002081 ORTHO05D002088 6.4e-30 134.4 122 57.4
Gohir.A05G302300 Gossypium hirsutum HOM05D002081 ORTHO05D002088 8.4e-30 134.0 122 58.2
Gorai.009G319900 Gossypium raimondii HOM05D002081 ORTHO05D002088 8.4e-30 134.0 122 58.2
Sp4g22090 Schrenkiella parvula HOM05D002081 ORTHO05D002088 8.4e-30 134.0 128 57.8
TPR.G10328 Trifolium pratense HOM05D002081 ORTHO05D002088 8.4e-30 134.0 123 58.5
A04p30240 Brassica napus HOM05D002081 ORTHO05D002088 1.1e-29 133.7 127 55.1
AL4G37350 Arabidopsis lyrata HOM05D002081 ORTHO05D002088 1.4e-29 133.3 129 57.4
Carub.0004s2191 Capsella rubella HOM05D002081 ORTHO05D002088 1.4e-29 133.3 128 57.0
Gohir.D05G301800 Gossypium hirsutum HOM05D002081 ORTHO05D002088 1.4e-29 133.3 122 58.2
Hund13800 Selenicereus undatus HOM05D002081 ORTHO05D002088 1.4e-29 133.3 123 58.5
Duzib106G0565 Durio zibethinus HOM05D002081 ORTHO05D002088 1.9e-29 132.9 122 59.8
TPR.G25857 Trifolium pratense HOM05D002081 ORTHO05D002088 2.4e-29 132.5 122 57.4
LjContig00141g0016830 Lotus japonicus HOM05D002081 ORTHO05D002088 3.2e-29 132.1 126 54.8
Medtr5g081040 Medicago truncatula HOM05D002081 ORTHO05D002088 4.2e-29 131.7 120 59.2
Duzib106G1433 Durio zibethinus HOM05D002081 ORTHO05D002088 7.1e-29 131.0 130 56.2
Ca_05907_v3 Cicer arietinum L. HOM05D002081 ORTHO05D002088 9.3e-29 130.6 123 57.7
Duzib114G0689 Durio zibethinus HOM05D002081 ORTHO05D002088 1.6e-28 129.8 128 57.8
Aqoxy1G00829 Aquilegia oxysepala HOM05D002081 ORTHO05D002088 6.0e-28 127.9 121 52.9
HanXRQChr08g0221211 Helianthus annuus HOM05D002081 ORTHO05D002088 7.8e-28 127.5 123 57.7
MBI14_g09011_MAGBIO Magnolia biondii HOM05D002081 ORTHO05D002088 7.8e-28 127.5 120 53.3
Lalb_Chr10g0104771 Lupinus albus HOM05D002081 ORTHO05D002088 1.3e-27 126.7 133 54.1
Ah.16g102690 Amaranthus hybridus HOM05D001947 ORTHO05D002440 3.0e-27 125.6 123 55.3
arahy.Tifrunner.gnm1.ann1.KXA9QZ Arachis hypogaea HOM05D002081 ORTHO05D002088 3.0e-27 125.6 124 57.3
Hund16051 Selenicereus undatus HOM05D002081 ORTHO05D002088 3.0e-27 125.6 121 54.5
DCAR_027588 Daucus carota HOM05D002081 ORTHO05D002088 5.1e-27 124.8 99 65.7
Duzib106G1704 Durio zibethinus HOM05D002081 ORTHO05D002088 5.1e-27 124.8 122 57.4
BraA04t18484Z Brassica rapa HOM05D002081 ORTHO05D002088 1.1e-26 123.6 134 51.5
PSO339G3649 Papaver somniferum HOM05D002081 ORTHO05D002088 1.5e-26 123.2 124 51.6
PSO384G4711 Papaver somniferum HOM05D002081 ORTHO05D002088 1.5e-26 123.2 124 51.6
arahy.Tifrunner.gnm1.ann1.FCQ45K Arachis hypogaea HOM05D002081 ORTHO05D002088 2.5e-26 122.5 124 56.5
ClCG11G006590 Citrullus lanatus HOM05D002081 ORTHO05D002088 1.3e-25 120.2 100 64.0
CDE04G2263 Ceratophyllum demersum HOM05D001947 ORTHO05D002440 2.8e-25 119.0 121 50.4
CDE03G0226 Ceratophyllum demersum HOM05D002081 ORTHO05D002088 3.6e-25 118.6 121 51.2
Sabra10G0152600 Salix brachista HOM05D002081 ORTHO05D002088 3.1e-24 115.5 111 57.7
VMungo1383G3669 Vigna mungo HOM05D002081 ORTHO05D002088 2.0e-23 112.8 97 58.8
Gohir.A05G347300 Gossypium hirsutum HOM05D002081 ORTHO05D002088 2.6e-23 112.5 122 54.1
DCAR_024872 Daucus carota HOM05D002081 ORTHO05D002088 3.4e-23 112.1 97 60.8
Gorai.012G073100 Gossypium raimondii HOM05D002081 ORTHO05D002088 7.6e-23 110.9 122 53.3
Psat2g038920 Pisum sativum HOM05D002081 ORTHO05D002088 7.6e-23 110.9 120 52.5
CANSAT56G4043 Cannabis sativa HOM05D002081 ORTHO05D002088 9.9e-23 110.5 79 68.4
Gohir.D04G065000 Gossypium hirsutum HOM05D002081 ORTHO05D002088 6.4e-22 107.8 122 53.3
Zm00001eb289530 Zea mays HOM05D002081 ORTHO05D002088 1.6e-20 103.2 123 48.8
Thhalv10017061m.g Eutrema salsugineum HOM05D002081 ORTHO05D002088 3.5e-20 102.1 79 65.8
Os05g0455800 Oryza sativa ssp. japonica HOM05D002081 ORTHO05D002088 1.8e-19 99.8 126 46.0
Oeu001519.1 Olea europaea HOM05D002081 ORTHO05D002088 1.6e-17 93.2 57 71.9
unitig_27.g25068 Utricularia gibba HOM05D002081 ORTHO05D002088 3.6e-17 92.0 65 69.2
HPP92_003399 Vanilla planifolia HOM05D002081 ORTHO05D002088 2.6e-15 85.9 121 45.5
SEGI_37536 Sequoiadendron giganteum HOM05D002081 ORTHO05D002088 2.2e-14 82.8 133 42.9
SHI03706 Sapria himalayana HOM05D002081 ORTHO05D002088 1.4e-13 80.1 95 50.5
Manes.10G024240 Manihot esculenta HOM05D003154 ORTHO05D003565 1.1e-10 70.5 77 53.2
Manes.10G024133 Manihot esculenta HOM05D003154 ORTHO05D003565 1.3e-09 67.0 77 51.9
SEGI_41301 Sequoiadendron giganteum HOM05D002081 ORTHO05D002088 1.6e-09 66.6 95 44.2
Cpa.g.sc776.6 Carica papaya HOM05D002081 ORTHO05D002088 2.4e-08 62.8 66 54.5
Pp3c1_31750 Physcomitrium patens HOM05D002081 ORTHO05D002088 2.4e-08 62.8 134 32.8
Pp3c1_31760 Physcomitrium patens HOM05D002081 ORTHO05D002088 2.4e-08 62.8 134 32.8
Gohir.A10G223500 Gossypium hirsutum HOM05D002081 ORTHO05D002088 1.5e-07 60.1 122 39.3
CDE04G1806 Ceratophyllum demersum HOM05D002081 ORTHO05D002088 1.0e-06 57.4 125 33.6
ATR0706G136 Amborella trichopoda HOM05D002081 ORTHO05D002088 2.9e-06 55.8 131 29.8
Mapoly0005s0055 Marchantia polymorpha HOM05D002081 ORTHO05D002088 4.9e-06 55.1 132 31.8
Cc02_g33510 Coffea canephora HOM05D002081 ORTHO05D002088 6.5e-06 54.7 129 31.0
Nn1g02215 Nelumbo nucifera HOM05D002081 ORTHO05D002088 6.5e-06 54.7 133 30.1
unitig_0.g1112 Utricularia gibba HOM05D002081 ORTHO05D002088 6.5e-06 54.7 129 28.7
Gohir.D13G179400 Gossypium hirsutum HOM05D002081 ORTHO05D002088 8.4e-06 54.3 133 27.8
Gorai.013G204700 Gossypium raimondii HOM05D002081 ORTHO05D002088 8.4e-06 54.3 133 27.8
Prupe.6G326800 Prunus persica HOM05D002081 ORTHO05D002088 8.4e-06 54.3 129 31.8
TWI56G1185 Tripterygium wilfordii HOM05D002081 ORTHO05D002088 8.4e-06 54.3 129 28.7


User provided reference genes

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