Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0008089g0010 Nicotiana tabacum HOM05D006287 ORTHO05D008192 6.3e-63 246.5 116 100.0
Nitab4.5_0000151g0190 Nicotiana tabacum HOM05D006287 ORTHO05D008192 6.3e-55 219.9 116 91.4
Nitab4.5_0001669g0010 Nicotiana tabacum HOM05D006287 ORTHO05D008192 6.9e-54 216.5 116 89.7
PGSC0003DMG400023145 Solanum tuberosum HOM05D006287 ORTHO05D008192 3.5e-45 187.6 116 76.7
Sopen08g021010 Solanum pennellii HOM05D006287 ORTHO05D008192 2.9e-44 184.5 116 74.1
CAN.G98.23 Capsicum annuum HOM05D006287 ORTHO05D008192 6.5e-44 183.3 117 76.9
Solyc08g067060.2 Solanum lycopersicum HOM05D006287 ORTHO05D008192 1.1e-43 182.6 116 73.3
CAN.G1030.29 Capsicum annuum HOM05D006287 ORTHO05D008192 2.6e-32 144.8 111 70.3
Peaxi162Scf00341g00062 Petunia axillaris HOM05D006287 ORTHO05D008192 5.5e-27 127.1 82 72.0
Hma1.2p1_0007F.1_g005110 Hydrangea macrophylla HOM05D006287 ORTHO05D008192 1.0e-25 122.9 109 51.4
CSS0042508 Camellia sinensis var. sinensis HOM05D006287 ORTHO05D008192 4.4e-24 117.5 114 46.5
CSS0048694 Camellia sinensis var. sinensis HOM05D006287 ORTHO05D008192 1.1e-22 112.8 110 51.8
Nitab4.5_0003498g0100 Nicotiana tabacum HOM05D006287 ORTHO05D008192 3.1e-22 111.3 66 83.3
CiPaw.06G059600 Carya illinoinensis HOM05D006287 ORTHO05D008192 4.1e-22 110.9 114 47.4
Haze_21571 Corylus avellana HOM05D006287 ORTHO05D008192 5.4e-22 110.5 114 50.0
Prupe.6G275900 Prunus persica HOM05D006287 ORTHO05D008192 5.9e-21 107.1 110 50.0
Cc11_g01810 Coffea canephora HOM05D006287 ORTHO05D008192 1.7e-20 105.5 105 47.6
Thecc.09G149000 Theobroma cacao HOM05D006287 ORTHO05D008192 3.8e-20 104.4 111 47.7
Oeu008766.1 Olea europaea HOM05D006287 ORTHO05D008192 7.3e-19 100.1 115 41.7
MD04G1151000 Malus domestica HOM05D006287 ORTHO05D008192 9.5e-19 99.8 112 44.6
Actinidia15687 Actinidia chinensis HOM05D006287 ORTHO05D008192 1.8e-17 95.5 80 52.5
VMungo0331G1641 Vigna mungo HOM05D006287 ORTHO05D008192 3.0e-17 94.7 107 40.2
GSVIVG01035807001 Vitis vinifera HOM05D006287 ORTHO05D008192 4.0e-17 94.4 80 51.2
Aa31sc33G30 Aethionema arabicum HOM05D006287 ORTHO05D008192 1.2e-16 92.8 107 41.1
MSTRG.25851 Avicennia marina HOM05D006287 ORTHO05D008192 1.2e-16 92.8 115 38.3
TPR.G5411 Trifolium pratense HOM05D008207 ORTHO05D010373 1.2e-16 92.8 76 51.3
MD12G1164900 Malus domestica HOM05D006287 ORTHO05D008192 2.0e-16 92.0 112 42.0
PGR142G2973 Punica granatum HOM05D006287 ORTHO05D008192 5.8e-16 90.5 110 40.0
Ciclev10010816m.g Citrus clementina HOM05D006287 ORTHO05D008192 7.5e-16 90.1 106 39.6
Dinv11617 Davidia involucrata HOM05D006287 ORTHO05D008192 9.8e-16 89.7 76 52.6
Duzib150G0458 Durio zibethinus HOM05D006287 ORTHO05D008192 2.9e-15 88.2 78 50.0
CANSAT11G2472 Cannabis sativa HOM05D006287 ORTHO05D008192 3.7e-15 87.8 79 50.6
Duzib168G0154 Durio zibethinus HOM05D006287 ORTHO05D008192 4.9e-15 87.4 78 46.2
Gorai.011G097400 Gossypium raimondii HOM05D006287 ORTHO05D008192 1.4e-14 85.9 80 43.8
MSTRG.11775 Avicennia marina HOM05D006287 ORTHO05D008192 1.8e-14 85.5 111 35.1
CARHR164980 Cardamine hirsuta HOM05D006287 ORTHO05D008192 2.4e-14 85.1 114 38.6
Cpa.g.sc1.269 Carica papaya HOM05D006287 ORTHO05D008192 4.1e-14 84.3 77 45.5
THA.LOC104824237 Tarenaya hassleriana HOM05D006287 ORTHO05D008192 5.4e-14 84.0 106 37.7
Atru.chr7.2375 Acer truncatum HOM05D006287 ORTHO05D008192 7.0e-14 83.6 98 40.8
Ca_26550_v3 Cicer arietinum L. HOM05D006287 ORTHO05D008192 9.2e-14 83.2 73 46.6
AT2G39230 Arabidopsis thaliana HOM05D006287 ORTHO05D008192 2.0e-13 82.0 112 34.8
Phvul.009G090400 Phaseolus vulgaris HOM05D006287 ORTHO05D008192 2.0e-13 82.0 75 48.0
Medtr4g076540 Medicago truncatula HOM05D006287 ORTHO05D008192 2.7e-13 81.6 71 47.9
Psat7g237040 Pisum sativum HOM05D006287 ORTHO05D008192 2.7e-13 81.6 73 45.2
QL05p049822 Quercus lobata HOM05D006287 ORTHO05D008192 4.6e-13 80.9 79 46.8
QL08p000602 Quercus lobata HOM05D006287 ORTHO05D008192 4.6e-13 80.9 79 45.6
Thhalv10010921m.g Eutrema salsugineum HOM05D006287 ORTHO05D008192 7.8e-13 80.1 114 37.7
AT3G54980 Arabidopsis thaliana HOM05D006287 ORTHO05D008192 1.0e-12 79.7 105 37.1
arahy.Tifrunner.gnm1.ann1.VPFI8Q Arachis hypogaea HOM05D006287 ORTHO05D008192 1.0e-12 79.7 75 41.3
Potri.006G250700 Populus trichocarpa HOM05D006287 ORTHO05D008192 1.0e-12 79.7 75 46.7
Sabra06G0196000 Salix brachista HOM05D001686 ORTHO05D008192 1.3e-12 79.3 75 48.0
Eucgr.I01690 Eucalyptus grandis HOM05D006287 ORTHO05D008192 1.7e-12 79.0 79 46.8
Oeu032501.2 Olea europaea HOM05D006287 ORTHO05D008192 1.7e-12 79.0 91 38.5
AL5G36090 Arabidopsis lyrata HOM05D006287 ORTHO05D008192 2.3e-12 78.6 111 36.9
Nn5g27729 Nelumbo nucifera HOM05D006287 ORTHO05D008192 2.3e-12 78.6 103 39.8
Hund04746 Selenicereus undatus HOM05D006287 ORTHO05D008192 2.3e-12 78.6 109 33.0
Lj7C718G17 Lonicera japonica HOM05D006287 ORTHO05D008192 3.9e-12 77.8 80 45.0
Sp4g21560 Schrenkiella parvula HOM05D006287 ORTHO05D008192 5.0e-12 77.4 104 33.7
SpUn0018_0110 Schrenkiella parvula HOM05D006287 ORTHO05D008192 5.0e-12 77.4 104 33.7
AUR62021186 Chenopodium quinoa HOM05D006287 ORTHO05D008192 6.6e-12 77.0 97 40.2
Glyma.07G068500 Glycine max HOM05D006287 ORTHO05D008192 1.5e-11 75.9 77 41.6
Nn3g20345 Nelumbo nucifera HOM05D006287 ORTHO05D008192 3.3e-11 74.7 106 39.6
RcHm_v2.0_Chr7g0216391 Rosa chinensis HOM05D006287 ORTHO05D008192 3.3e-11 74.7 82 42.7
SGA_v2.0_scaffold22G09931 Striga asiatica HOM05D006287 ORTHO05D008192 3.3e-11 74.7 99 35.4
AUR62015978 Chenopodium quinoa HOM05D006287 ORTHO05D008192 4.3e-11 74.3 97 38.1
COL.COLO4_23984 Corchorus olitorius HOM05D006287 ORTHO05D008192 4.3e-11 74.3 66 48.5
DCAR_006447 Daucus carota HOM05D006287 ORTHO05D008192 4.3e-11 74.3 100 41.0
Ah.13g068920 Amaranthus hybridus HOM05D006287 ORTHO05D008192 5.6e-11 73.9 106 38.7
Sc25g0000480 Simmondsia chinensis HOM05D006287 ORTHO05D008192 7.3e-11 73.6 109 33.0
RcHm_v2.0_Chr6g0264781 Rosa chinensis HOM05D006287 ORTHO05D008192 1.2e-10 72.8 104 34.6
BcaNung04649 Brassica carinata HOM05D006287 ORTHO05D008192 2.1e-10 72.0 114 35.1
C08p30210 Brassica napus HOM05D006287 ORTHO05D008192 2.1e-10 72.0 114 35.1
BolC8t50627H Brassica oleracea HOM05D006287 ORTHO05D008192 2.1e-10 72.0 114 35.1
FvH4_5g25890 Fragaria vesca HOM05D006287 ORTHO05D008192 6.2e-10 70.5 89 36.0
FAN18G3351 Fragaria x ananassa HOM05D006287 ORTHO05D008192 6.2e-10 70.5 89 36.0
LjContig00081g0002723 Lotus japonicus HOM05D006287 ORTHO05D008192 6.2e-10 70.5 73 35.6
Lalb_Chr07g0185941 Lupinus albus HOM05D006287 ORTHO05D008192 8.0e-10 70.1 72 43.1
RcHm_v2.0_Chr4g0410561 Rosa chinensis HOM05D006287 ORTHO05D008192 2.3e-09 68.6 115 35.7
Thhalv10017602m.g Eutrema salsugineum HOM05D006287 ORTHO05D008192 3.1e-09 68.2 107 29.0
TPR.G5606 Trifolium pratense HOM05D006287 ORTHO05D008192 3.1e-09 68.2 84 39.3
AL4G36540 Arabidopsis lyrata HOM05D006287 ORTHO05D008192 6.8e-09 67.0 83 37.3
Carub.0005s2160 Capsella rubella HOM05D006287 ORTHO05D008192 6.8e-09 67.0 85 38.8
ClCG02G013330 Citrullus lanatus HOM05D006287 ORTHO05D008192 8.9e-09 66.6 72 41.7
AUR62021185 Chenopodium quinoa HOM05D006287 ORTHO05D008192 2.0e-08 65.5 96 34.4
AUR62015977 Chenopodium quinoa HOM05D006287 ORTHO05D008192 3.4e-08 64.7 113 28.3
Carub.0004s2128 Capsella rubella HOM05D006287 ORTHO05D008192 5.8e-08 63.9 83 37.3
MELO3C020947.2 Cucumis melo HOM05D006287 ORTHO05D008192 5.8e-08 63.9 74 39.2
CsaV3_2G017510 Cucumis sativus L. HOM05D006287 ORTHO05D008192 5.8e-08 63.9 74 39.2
TWI63G1321 Tripterygium wilfordii HOM05D006287 ORTHO05D008192 9.8e-08 63.2 81 38.3
THA.LOC104809984 Tarenaya hassleriana HOM05D006287 ORTHO05D008192 1.7e-07 62.4 76 35.5
MBI01_g07128_MAGBIO Magnolia biondii HOM05D006287 ORTHO05D008192 3.7e-07 61.2 104 37.5
Sed0018262 Sechium edule HOM05D006287 ORTHO05D008192 6.4e-07 60.5 88 37.5
HPP92_023171 Vanilla planifolia HOM05D006287 ORTHO05D008192 2.4e-06 58.5 106 34.9
CDE03G0083 Ceratophyllum demersum HOM05D006287 ORTHO05D008192 9.2e-06 56.6 110 29.1


User provided reference genes

Program Settings