Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0008076g0010 Nicotiana tabacum HOM05D004552 ORTHO05D005501 2.1e-206 722.2 400 100.0
Nitab4.5_0006780g0010 Nicotiana tabacum HOM05D004552 ORTHO05D005501 4.8e-190 667.9 400 92.0
CAN.G525.45 Capsicum annuum HOM05D004552 ORTHO05D005501 6.5e-179 630.9 403 89.1
Nitab4.5_0001952g0150 Nicotiana tabacum HOM05D004552 ORTHO05D005501 1.2e-177 626.7 400 88.5
Nitab4.5_0005206g0040 Nicotiana tabacum HOM05D004552 ORTHO05D005501 5.7e-175 617.8 400 87.8
Peaxi162Scf00569g00015 Petunia axillaris HOM05D004552 ORTHO05D005501 4.8e-174 614.8 403 88.3
Sopen02g031920 Solanum pennellii HOM05D004552 ORTHO05D005501 3.1e-173 612.1 403 87.3
Solyc02g087180.4 Solanum lycopersicum HOM05D004552 ORTHO05D005501 5.0e-171 604.7 401 86.3
Solyc04g014240.1 Solanum lycopersicum HOM05D004552 ORTHO05D005501 7.9e-169 597.4 403 85.6
Sopen04g006350 Solanum pennellii HOM05D004552 ORTHO05D005501 1.5e-167 593.2 403 85.1
CAN.G206.55 Capsicum annuum HOM05D004552 ORTHO05D005501 1.8e-165 586.3 403 84.1
Dinv37242 Davidia involucrata HOM05D004552 ORTHO05D005501 2.3e-152 542.7 412 77.7
Actinidia19722 Actinidia chinensis HOM05D004552 ORTHO05D005501 1.3e-147 526.9 412 74.3
Rhsim10G0168100 Rhododendron simsii HOM05D004552 ORTHO05D005501 1.2e-145 520.4 408 74.5
Oeu029550.1 Olea europaea HOM05D004552 ORTHO05D005501 8.0e-145 517.7 412 75.0
MSTRG.16520 Avicennia marina HOM05D004552 ORTHO05D005501 2.3e-144 516.2 413 74.8
Rhsim11G0041500 Rhododendron simsii HOM05D004552 ORTHO05D005501 2.3e-144 516.2 408 74.0
PGSC0003DMG400000510 Solanum tuberosum HOM05D004552 ORTHO05D005501 3.4e-143 512.3 326 88.7
Rhsim11G0041800 Rhododendron simsii HOM05D004552 ORTHO05D005501 3.5e-140 502.3 406 72.9
Oeu026072.1 Olea europaea HOM05D004552 ORTHO05D005501 2.9e-139 499.2 410 73.2
CSS0033785 Camellia sinensis var. sinensis HOM05D004552 ORTHO05D005501 6.8e-136 488.0 412 70.9
TWI53G0358 Tripterygium wilfordii HOM05D004552 ORTHO05D005501 4.4e-135 485.3 420 71.2
Cc00_g23990 Coffea canephora HOM05D004552 ORTHO05D005501 1.3e-134 483.8 412 71.4
PGR004G2024 Punica granatum HOM05D004552 ORTHO05D005501 7.0e-133 478.0 411 70.1
Thecc.05G052700 Theobroma cacao HOM05D004552 ORTHO05D005501 1.2e-132 477.2 418 70.6
HanXRQChr05g0156781 Helianthus annuus HOM05D004552 ORTHO05D005501 2.0e-132 476.5 404 70.5
DCAR_009290 Daucus carota HOM05D004552 ORTHO05D005501 5.0e-131 471.9 412 69.7
SalBow4G1233 Salvia bowleyana HOM05D004552 ORTHO05D005501 6.6e-131 471.5 404 69.8
TAR369G0596 Trochodendron aralioides HOM05D004552 ORTHO05D005501 8.6e-131 471.1 413 70.2
Lsat_1_v5_gn_5_8941 Lactuca sativa HOM05D004552 ORTHO05D005501 4.3e-130 468.8 403 69.5
Migut.K00511 Erythranthe guttata HOM05D004552 ORTHO05D005501 3.6e-129 465.7 409 70.4
ClCG04G008790 Citrullus lanatus HOM05D004552 ORTHO05D005501 1.0e-128 464.2 411 69.6
Hund08942 Selenicereus undatus HOM05D004552 ORTHO05D005501 1.0e-128 464.2 411 68.4
EL10Ac7g16819 Beta vulgaris HOM05D004552 ORTHO05D005501 1.3e-126 457.2 409 66.0
ECA246G2681 Erigeron canadensis HOM05D003206 ORTHO05D005207 1.7e-126 456.8 402 68.4
DCAR_002493 Daucus carota HOM05D004552 ORTHO05D005501 2.2e-126 456.4 412 68.0
QL07p045485 Quercus lobata HOM05D004552 ORTHO05D005501 2.9e-126 456.1 416 66.8
ClCG10G016170 Citrullus lanatus HOM05D004552 ORTHO05D005501 5.4e-125 451.8 404 68.3
THA.LOC104823245 Tarenaya hassleriana HOM05D004552 ORTHO05D005501 1.2e-124 450.7 424 66.3
Duzib106G1297 Durio zibethinus HOM05D004552 ORTHO05D005501 7.8e-124 448.0 412 67.5
Ciclev10011831m.g Citrus clementina HOM05D004552 ORTHO05D005501 1.0e-123 447.6 417 65.2
CsaV3_4G024350 Cucumis sativus L. HOM05D004552 ORTHO05D005501 1.3e-123 447.2 407 67.8
AUR62025361 Chenopodium quinoa HOM05D004552 ORTHO05D005501 2.3e-123 446.4 409 66.0
AUR62028362 Chenopodium quinoa HOM05D004552 ORTHO05D005501 3.0e-123 446.0 409 66.3
Sed0010830 Sechium edule HOM05D004552 ORTHO05D005501 5.0e-123 445.3 409 68.0
MELO3C014263.2 Cucumis melo HOM05D004552 ORTHO05D005501 4.3e-122 442.2 410 67.1
unitig_899.g15236 Utricularia gibba HOM05D004552 ORTHO05D005501 4.3e-122 442.2 410 66.6
Ah.14g084480 Amaranthus hybridus HOM05D004552 ORTHO05D005501 1.8e-120 436.8 407 63.6
Cfa017496 Carpinus fangiana HOM05D004552 ORTHO05D005501 5.2e-120 435.3 409 66.7
CiPaw.09G181100 Carya illinoinensis HOM05D004552 ORTHO05D005501 8.9e-120 434.5 418 66.5
Atru.chr8.2543 Acer truncatum HOM05D004552 ORTHO05D005501 1.2e-119 434.1 420 64.8
Potri.016G084200 Populus trichocarpa HOM05D004552 ORTHO05D005501 1.2e-119 434.1 401 66.6
Haze_20666 Corylus avellana HOM05D004552 ORTHO05D005501 4.4e-119 432.2 411 66.7
Glyma.08G287300 Glycine max HOM05D004552 ORTHO05D005501 2.9e-118 429.5 400 66.2
Nn1g07079 Nelumbo nucifera HOM05D004552 ORTHO05D005501 1.4e-117 427.2 426 64.3
RcHm_v2.0_Chr1g0360161 Rosa chinensis HOM05D004552 ORTHO05D005501 1.9e-117 426.8 419 64.0
Lj3g0026232 Lotus japonicus HOM05D004552 ORTHO05D005501 3.2e-117 426.0 411 64.5
Lj5g0019559 Lotus japonicus HOM05D004552 ORTHO05D005501 3.2e-117 426.0 411 64.5
Medtr8g075790 Medicago truncatula HOM05D004552 ORTHO05D005501 1.2e-116 424.1 410 65.1
COL.COLO4_27097 Corchorus olitorius HOM05D004552 ORTHO05D005501 2.0e-116 423.3 337 73.6
arahy.Tifrunner.gnm1.ann1.CZIV0N Arachis hypogaea HOM05D004552 ORTHO05D005501 3.5e-116 422.5 408 65.7
Ca_22379_v3 Cicer arietinum L. HOM05D004552 ORTHO05D005501 3.5e-116 422.5 410 65.4
VMungo0251G2800 Vigna mungo HOM05D004552 ORTHO05D005501 3.5e-116 422.5 399 64.2
arahy.Tifrunner.gnm1.ann1.URH0Q0 Arachis hypogaea HOM05D004552 ORTHO05D005501 6.0e-116 421.8 408 65.4
PSO832G0086 Papaver somniferum HOM05D004552 ORTHO05D005501 1.3e-115 420.6 420 63.6
arahy.Tifrunner.gnm1.ann1.LN9G9C Arachis hypogaea HOM05D004552 ORTHO05D005501 1.7e-115 420.2 408 65.4
Gohir.A03G063400 Gossypium hirsutum HOM05D004552 ORTHO05D005501 1.7e-115 420.2 353 70.0
Phvul.003G261400 Phaseolus vulgaris HOM05D004552 ORTHO05D005501 1.7e-115 420.2 400 66.5
arahy.Tifrunner.gnm1.ann1.6MTV2V Arachis hypogaea HOM05D004552 ORTHO05D005501 2.3e-115 419.9 408 65.4
Ca_19605_v3 Cicer arietinum L. HOM05D004552 ORTHO05D005501 2.3e-115 419.9 410 65.6
Lj4g0012826 Lotus japonicus HOM05D004552 ORTHO05D005501 3.0e-115 419.5 411 64.0
Gorai.003G108400 Gossypium raimondii HOM05D004552 ORTHO05D005501 1.5e-114 417.2 353 70.0
Glyma.06G188800 Glycine max HOM05D004552 ORTHO05D005501 4.3e-114 415.6 400 64.5
Gohir.D03G102900 Gossypium hirsutum HOM05D004552 ORTHO05D005501 7.3e-114 414.8 353 69.7
PSO210G6420 Papaver somniferum HOM05D004552 ORTHO05D005501 9.5e-114 414.5 418 64.1
Manes.09G079900 Manihot esculenta HOM05D004552 ORTHO05D005501 2.8e-113 412.9 411 63.7
Sp6g39730 Schrenkiella parvula HOM05D004552 ORTHO05D005501 6.2e-113 411.8 427 63.7
Medtr6g089780 Medicago truncatula HOM05D004552 ORTHO05D005501 1.1e-112 411.0 409 63.6
Cc03_g15870 Coffea canephora HOM05D004552 ORTHO05D005501 1.4e-112 410.6 412 64.1
Glyma.13G067700 Glycine max HOM05D004552 ORTHO05D005501 1.8e-112 410.2 400 64.8
SGA_v2.0_scaffold204G41624 Striga asiatica HOM05D004552 ORTHO05D005501 3.1e-112 409.5 414 66.7
CARHR210480 Cardamine hirsuta HOM05D004552 ORTHO05D005501 5.2e-112 408.7 425 62.8
Thhalv10013588m.g Eutrema salsugineum HOM05D004552 ORTHO05D005501 6.8e-112 408.3 434 61.8
Manes.08G002200 Manihot esculenta HOM05D004552 ORTHO05D005501 3.4e-111 406.0 414 63.5
CANSAT56G3582 Cannabis sativa HOM05D004552 ORTHO05D005501 7.5e-111 404.8 404 63.9
TPR.G33503 Trifolium pratense HOM05D004552 ORTHO05D005501 1.7e-110 403.7 410 63.4
RcHm_v2.0_Chr1g0361081 Rosa chinensis HOM05D004552 ORTHO05D005501 2.9e-110 402.9 408 62.3
Sc07g0006230 Simmondsia chinensis HOM05D004552 ORTHO05D005501 2.9e-110 402.9 412 63.3
Psat7g019080 Pisum sativum HOM05D004552 ORTHO05D005501 4.9e-110 402.1 429 61.8
Lalb_Chr05g0229841 Lupinus albus HOM05D004552 ORTHO05D005501 4.1e-109 399.1 408 62.7
BcaC06g32015 Brassica carinata HOM05D004552 ORTHO05D005501 9.2e-109 397.9 423 61.5
C09p73810 Brassica napus HOM05D004552 ORTHO05D005501 9.2e-109 397.9 430 60.7
BolC9t60115H Brassica oleracea HOM05D004552 ORTHO05D005501 9.2e-109 397.9 430 60.7
Prupe.2G197600 Prunus persica HOM05D004552 ORTHO05D005501 9.2e-109 397.9 413 62.2
AL6G12120 Arabidopsis lyrata HOM05D004552 ORTHO05D005501 1.0e-107 394.4 428 60.5
AT5G02850 Arabidopsis thaliana HOM05D004552 ORTHO05D005501 1.7e-107 393.7 426 61.3
Aa31LG1G22060 Aethionema arabicum HOM05D004552 ORTHO05D005501 5.1e-107 392.1 428 59.8
FAN03G3426 Fragaria x ananassa HOM05D004552 ORTHO05D005501 1.5e-106 390.6 420 60.2
FvH4_7g16920 Fragaria vesca HOM05D004552 ORTHO05D005501 9.5e-106 387.9 419 60.4
CDE04G3741 Ceratophyllum demersum HOM05D004552 ORTHO05D005501 3.6e-105 386.0 412 59.7
FAN01G0370 Fragaria x ananassa HOM05D004552 ORTHO05D005501 4.7e-105 385.6 419 60.1
A10p32880 Brassica napus HOM05D004552 ORTHO05D005501 5.2e-104 382.1 432 59.5
FAN06G4506 Fragaria x ananassa HOM05D004552 ORTHO05D005501 5.2e-104 382.1 419 59.9
TPR.G27980 Trifolium pratense HOM05D004552 ORTHO05D005501 5.8e-103 378.6 330 64.8
Carub.0006s0165 Capsella rubella HOM05D004552 ORTHO05D005501 2.2e-102 376.7 431 59.2
Sabra16G0091200 Salix brachista HOM05D004552 ORTHO05D005501 4.9e-102 375.6 328 68.6
FAN06G3324 Fragaria x ananassa HOM05D004552 ORTHO05D005501 2.4e-101 373.2 405 59.8
Lj6g0002066 Lotus japonicus HOM05D004552 ORTHO05D005501 4.1e-101 372.5 411 58.6
Manes.09G080009 Manihot esculenta HOM05D004552 ORTHO05D005501 3.5e-100 369.4 341 66.0
FvH4_7g17650 Fragaria vesca HOM05D004552 ORTHO05D005501 7.8e-100 368.2 408 59.3
vmacro04719 Vaccinium macrocarpon HOM05D004552 ORTHO05D005501 1.7e-99 367.1 324 69.4
SHI12593 Sapria himalayana HOM05D004552 ORTHO05D005501 2.3e-99 366.7 402 59.7
Aqoxy4G02198 Aquilegia oxysepala HOM05D004552 ORTHO05D005501 1.1e-98 364.4 431 57.3
arahy.Tifrunner.gnm1.ann1.52IM1F Arachis hypogaea HOM05D004552 ORTHO05D005501 3.3e-98 362.8 316 69.0
Eucgr.J03059 Eucalyptus grandis HOM05D004552 ORTHO05D005501 4.0e-96 355.9 439 56.3
FAN03G1811 Fragaria x ananassa HOM05D004552 ORTHO05D005501 8.9e-96 354.8 407 57.0
Psat4g100360 Pisum sativum HOM05D004552 ORTHO05D005501 2.0e-95 353.6 351 63.8
FAN06G0991 Fragaria x ananassa HOM05D004552 ORTHO05D005501 2.2e-94 350.1 405 58.0
SGA_v2.0_scaffold94G28661 Striga asiatica HOM05D004552 ORTHO05D005501 3.8e-94 349.4 333 68.8
Lj6g0014683 Lotus japonicus HOM05D004552 ORTHO05D005501 4.9e-94 349.0 359 60.4
MBI18_g25517_MAGBIO Magnolia biondii HOM05D004552 ORTHO05D005501 1.0e-91 341.3 349 62.5
Lj6g0013650 Lotus japonicus HOM05D004552 ORTHO05D005501 1.8e-88 330.5 411 55.2
PSO675G1725 Papaver somniferum HOM05D004552 ORTHO05D005501 4.9e-86 322.4 375 53.3
HPP92_012944 Vanilla planifolia HOM05D004552 ORTHO05D005501 4.9e-78 295.8 377 54.9
Os09g0540500 Oryza sativa ssp. japonica HOM05D004552 ORTHO05D005501 1.9e-77 293.9 426 48.4
RhsimUnG0119000 Rhododendron simsii HOM05D004552 ORTHO05D005501 4.3e-74 282.7 238 71.0
ATR0950G002 Amborella trichopoda HOM05D004552 ORTHO05D005501 2.1e-73 280.4 361 53.5
ATR0594G066 Amborella trichopoda HOM05D004552 ORTHO05D005501 1.4e-72 277.7 361 53.5
Zm00001eb103820 Zea mays HOM05D004552 ORTHO05D005501 2.7e-68 263.5 411 47.2
SEGI_01207 Sequoiadendron giganteum HOM05D004552 ORTHO05D005501 3.3e-66 256.5 415 45.3
FAN01G0473 Fragaria x ananassa HOM05D004552 ORTHO05D005501 9.0e-64 248.4 408 48.3
CDE07G0444 Ceratophyllum demersum HOM05D004552 ORTHO05D005501 1.7e-62 244.2 317 53.6
CSS0042772 Camellia sinensis var. sinensis HOM05D004552 ORTHO05D005501 2.7e-60 236.9 229 61.6
A03p00930 Brassica napus HOM05D004552 ORTHO05D005501 1.9e-53 214.2 207 62.8
PGSC0003DMG400023633 Solanum tuberosum HOM05D004552 ORTHO05D005501 6.7e-51 205.7 222 60.8
C03p01200 Brassica napus HOM05D004552 ORTHO05D005501 4.4e-50 203.0 273 54.9
BolC3t12680H Brassica oleracea HOM05D004552 ORTHO05D005501 4.4e-50 203.0 273 54.9
BcaB01g05872 Brassica carinata HOM05D004552 ORTHO05D005501 9.1e-48 195.3 286 50.0
Actinidia11233 Actinidia chinensis HOM05D004552 ORTHO05D005501 3.4e-47 193.4 337 45.7
THA.LOC104827455 Tarenaya hassleriana HOM05D004552 ORTHO05D005501 4.5e-47 193.0 212 59.4
FvH4_6g20640 Fragaria vesca HOM05D004552 ORTHO05D005501 1.0e-46 191.8 244 50.8
Mapoly0007s0084 Marchantia polymorpha HOM05D004552 ORTHO05D005501 2.5e-45 187.2 385 40.3
SEGI_11500 Sequoiadendron giganteum HOM05D004552 ORTHO05D005501 5.5e-45 186.0 340 43.5
FAN14G1867 Fragaria x ananassa HOM05D004552 ORTHO05D005501 4.7e-44 183.0 171 59.1
Pp3c14_11490 Physcomitrium patens HOM05D004552 ORTHO05D005501 7.4e-42 175.6 382 38.5
AagrBONN_evm.TU.Sc2ySwM_362.1766 Anthoceros agrestis HOM05D004552 ORTHO05D005501 1.3e-38 164.9 386 38.1
Lsat_1_v5_gn_8_95200 Lactuca sativa HOM05D004552 ORTHO05D005501 6.1e-36 156.0 102 78.4
BraA03t09475Z Brassica rapa HOM05D004552 ORTHO05D005501 3.8e-30 136.7 200 48.5
VMungo0647G0506 Vigna mungo HOM05D004552 ORTHO05D005501 2.7e-28 130.6 105 67.6
BraA10t45325Z Brassica rapa HOM05D001414 ORTHO05D000619 2.6e-26 124.0 146 61.6
Lj3E543T1 Lonicera japonica HOM05D004552 ORTHO05D005501 6.3e-25 119.4 109 76.1
CBR_g38095 Chara braunii HOM05D004552 ORTHO05D005501 3.5e-23 113.6 297 36.0
AagrBONN_evm.TU.Sc2ySwM_344.2458 Anthoceros agrestis HOM05D004552 ORTHO05D005501 1.3e-14 85.1 216 28.7
Lsat_1_v5_gn_8_95180 Lactuca sativa HOM05D004552 ORTHO05D005501 1.2e-12 78.6 71 63.4
Nitab4.5_0006780g0020 Nicotiana tabacum HOM05D004552 ORTHO05D005501 4.7e-12 76.6 43 90.7
MCO09G463 Micromonas commoda HOM05D004552 ORTHO05D005501 5.4e-08 63.2 192 35.9


User provided reference genes

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