Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0008059g0040 Nicotiana tabacum HOM05D003517 ORTHO05D009798 1.6e-70 269.2 132 100.0
CAN.G110.13 Capsicum annuum HOM05D003517 ORTHO05D009798 3.0e-24 115.5 60 93.3
Nitab4.5_0010559g0050 Nicotiana tabacum HOM05D003517 ORTHO05D009798 3.0e-24 115.5 60 93.3
Solyc00g021640.2 Solanum lycopersicum HOM05D003517 ORTHO05D009798 3.0e-24 115.5 60 93.3
CAN.G85.23 Capsicum annuum HOM05D003517 ORTHO05D009798 1.3e-22 110.2 59 91.5
Nn1g10026 Nelumbo nucifera HOM05D003517 ORTHO05D009798 1.3e-22 110.2 63 88.9
Nn1g10028 Nelumbo nucifera HOM05D003517 ORTHO05D009798 1.3e-22 110.2 63 88.9
Peaxi162Scf00456g00032 Petunia axillaris HOM05D003517 ORTHO05D009794 2.8e-22 109.0 60 90.0
Lj2P1236T76 Lonicera japonica HOM05D003517 ORTHO05D009798 3.7e-22 108.6 63 87.3
PGSC0003DMG400033608 Solanum tuberosum HOM05D003517 ORTHO05D009798 4.8e-22 108.2 56 94.6
Hma1.2p1_0020F.1_g014210 Hydrangea macrophylla HOM05D003517 ORTHO05D009798 1.4e-21 106.7 63 85.7
Nitab4.5_0003784g0040 Nicotiana tabacum HOM05D003517 ORTHO05D009798 1.8e-21 106.3 60 86.7
GSVIVG01006669001 Vitis vinifera HOM05D003517 ORTHO05D009798 1.2e-20 103.6 63 84.1
CsaV3_UNG208660 Cucumis sativus L. HOM05D003517 ORTHO05D009798 4.5e-20 101.7 67 77.6
RcHm_v2.0_MTg0499001 Rosa chinensis HOM05D003517 ORTHO05D009798 4.5e-20 101.7 63 81.0
Lj5g0015285 Lotus japonicus HOM05D003517 ORTHO05D009798 1.7e-19 99.8 64 82.8
LjContig00439g0008559 Lotus japonicus HOM05D003517 ORTHO05D009798 1.7e-19 99.8 64 82.8
Medtr0082s0030 Medicago truncatula HOM05D003517 ORTHO05D009798 1.7e-19 99.8 64 82.8
AT2G07734 Arabidopsis thaliana HOM05D003517 ORTHO05D009798 2.2e-19 99.4 67 77.6
ATMG00290 Arabidopsis thaliana HOM05D003517 ORTHO05D009798 2.2e-19 99.4 67 77.6
A04p09560 Brassica napus HOM05D003517 ORTHO05D009798 2.2e-19 99.4 67 77.6
BolSC28t60322H Brassica oleracea HOM05D003517 ORTHO05D009798 2.2e-19 99.4 67 77.6
BraSC48t46288Z Brassica rapa HOM05D003517 ORTHO05D009798 2.2e-19 99.4 67 77.6
BraSC48t46302Z Brassica rapa HOM05D003517 ORTHO05D009798 2.2e-19 99.4 67 77.6
Thhalv10023100m.g Eutrema salsugineum HOM05D003517 ORTHO05D009798 2.2e-19 99.4 67 77.6
Lsat_1_v5_gn_7_67721 Lactuca sativa HOM05D003517 ORTHO05D009798 2.2e-19 99.4 63 81.0
MBI05_g23322_MAGBIO Magnolia biondii HOM05D003517 ORTHO05D009798 2.2e-19 99.4 60 86.7
Ca_14831_v3 Cicer arietinum L. HOM05D003517 ORTHO05D009798 3.8e-19 98.6 64 81.2
DCAR_032455 Daucus carota HOM05D003517 ORTHO05D009798 3.8e-19 98.6 68 76.5
Lalb_Chr00c24g0406771 Lupinus albus HOM05D003517 ORTHO05D009798 6.5e-19 97.8 64 82.8
BraSC48t46337Z Brassica rapa HOM05D003517 ORTHO05D009798 8.5e-19 97.4 73 71.2
VMungo0985G0017 Vigna mungo HOM05D003517 ORTHO05D009798 1.4e-18 96.7 64 81.2
HanXRQChr10g0310901 Helianthus annuus HOM05D003517 ORTHO05D009798 1.9e-18 96.3 63 79.4
HanXRQChr16g0504301 Helianthus annuus HOM05D003517 ORTHO05D009798 1.9e-18 96.3 63 79.4
HanXRQMTg0579381 Helianthus annuus HOM05D003517 ORTHO05D009798 1.9e-18 96.3 63 79.4
arahy.Tifrunner.gnm1.ann1.PT41Y0 Arachis hypogaea HOM05D003517 ORTHO05D009798 1.2e-17 93.6 64 81.2
Eucgr.H02717 Eucalyptus grandis HOM05D003517 ORTHO05D009798 1.2e-17 93.6 61 78.7
SabraMtG0002700 Salix brachista HOM05D000890 ORTHO05D000697 1.2e-17 93.6 59 83.1
Eucgr.C02512 Eucalyptus grandis HOM05D003517 ORTHO05D009798 3.6e-17 92.0 61 78.7
Dinv18903 Davidia involucrata HOM05D003517 ORTHO05D009798 1.8e-16 89.7 48 91.7
Zm00001eb384400 Zea mays HOM05D003517 ORTHO05D009798 6.7e-16 87.8 60 78.3
Zm00001eb436030 Zea mays HOM05D003517 ORTHO05D009798 6.7e-16 87.8 60 78.3
Nitab4.5_0001152g1080 Nicotiana tabacum HOM05D003517 ORTHO05D009798 1.5e-15 86.7 55 78.2
SGA_v2.0_scaffold420G51390 Striga asiatica HOM05D003517 ORTHO05D009798 3.3e-15 85.5 62 75.8
CARHR287140 Cardamine hirsuta HOM05D003517 ORTHO05D009798 4.4e-15 85.1 58 77.6
CAN.G1109.3 Capsicum annuum HOM05D003517 ORTHO05D009798 2.4e-13 79.3 40 90.0
SHI35305 Sapria himalayana HOM05D003517 ORTHO05D009798 3.1e-13 79.0 48 81.2
Hma1.2p1_0020F.1_g014220 Hydrangea macrophylla HOM05D003517 ORTHO05D009798 7.0e-13 77.8 47 83.0
Oeu013683.1 Olea europaea HOM05D003517 ORTHO05D009798 2.6e-12 75.9 58 72.4
Nitab4.5_0000172g2160 Nicotiana tabacum HOM05D003517 ORTHO05D009798 1.3e-11 73.6 35 94.3
TPR.G31549 Trifolium pratense HOM05D003517 ORTHO05D009798 6.5e-11 71.2 40 87.5
TPR.G20538 Trifolium pratense HOM05D003517 ORTHO05D009798 1.9e-10 69.7 39 87.2
Nitab4.5_0001152g0480 Nicotiana tabacum HOM05D003517 ORTHO05D009798 5.5e-10 68.2 34 88.2
BolSC28t60424H Brassica oleracea HOM05D003517 ORTHO05D009798 3.0e-08 62.4 44 72.7
PSO063G7170 Papaver somniferum HOM05D003517 ORTHO05D009798 3.0e-08 62.4 62 53.2
PSO585G0042 Papaver somniferum HOM05D003517 ORTHO05D009798 3.0e-08 62.4 62 53.2
unitig_87.g28026 Utricularia gibba HOM05D003517 ORTHO05D009798 4.0e-08 62.0 47 70.2
Zm00001eb438100 Zea mays HOM05D003517 ORTHO05D009798 2.2e-06 56.2 37 78.4
Zm00001eb438980 Zea mays HOM05D003517 ORTHO05D009798 2.2e-06 56.2 37 78.4
Zm00001eb439060 Zea mays HOM05D003517 ORTHO05D009798 2.2e-06 56.2 37 78.4
Lalb_Chr22g0353801 Lupinus albus HOM05D003517 ORTHO05D009798 8.2e-06 54.3 31 83.9


User provided reference genes

Program Settings