Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0007963g0010 Nicotiana tabacum HOM05D004784 ORTHO05D005762 6.7e-240 833.6 407 100.0
Nitab4.5_0002695g0040 Nicotiana tabacum HOM05D004784 ORTHO05D005762 7.4e-239 830.1 407 99.5
PGSC0003DMG400016444 Solanum tuberosum HOM05D004784 ORTHO05D005762 1.1e-234 816.2 407 96.6
Peaxi162Scf00131g01117 Petunia axillaris HOM05D004784 ORTHO05D005762 1.4e-234 815.8 406 97.0
Sopen02g025500 Solanum pennellii HOM05D004784 ORTHO05D005762 3.2e-234 814.7 407 96.3
Solyc02g080810.3 Solanum lycopersicum HOM05D004784 ORTHO05D005762 5.5e-234 813.9 407 96.1
CAN.G1014.12 Capsicum annuum HOM05D004784 ORTHO05D005762 3.3e-231 804.7 407 95.6
Cc09_g01490 Coffea canephora HOM05D004784 ORTHO05D005762 1.6e-225 785.8 406 92.1
Sed0006727 Sechium edule HOM05D004784 ORTHO05D005762 7.4e-223 776.9 406 91.1
Oeu013835.1 Olea europaea HOM05D004784 ORTHO05D005762 9.7e-223 776.5 404 91.6
SalBow8G0639 Salvia bowleyana HOM05D004784 ORTHO05D005762 2.2e-222 775.4 403 91.6
MELO3C002444.2 Cucumis melo HOM05D004784 ORTHO05D005762 2.8e-222 775.0 406 89.9
Hma1.2p1_0091F.1_g046500 Hydrangea macrophylla HOM05D004784 ORTHO05D005762 6.3e-222 773.9 404 90.3
Manes.17G025900 Manihot esculenta HOM05D004784 ORTHO05D005762 8.2e-222 773.5 406 91.4
Oeu002744.1 Olea europaea HOM05D004784 ORTHO05D005762 1.4e-221 772.7 404 91.1
Dinv13913 Davidia involucrata HOM05D004784 ORTHO05D005762 6.9e-221 770.4 403 90.8
Glyma.17G012000 Glycine max HOM05D004784 ORTHO05D005762 9.1e-221 770.0 406 90.4
MSTRG.7197 Avicennia marina HOM05D004784 ORTHO05D005762 1.5e-220 769.2 404 91.1
CsaV3_1G010620 Cucumis sativus L. HOM05D004784 ORTHO05D005762 1.5e-220 769.2 406 89.4
Dinv20065 Davidia involucrata HOM05D004784 ORTHO05D005762 1.5e-220 769.2 403 90.8
QL05p072692 Quercus lobata HOM05D004784 ORTHO05D005762 1.5e-220 769.2 406 89.4
Lalb_Chr18g0056491 Lupinus albus HOM05D004784 ORTHO05D005762 2.0e-220 768.8 407 89.4
Phvul.003G080400 Phaseolus vulgaris HOM05D004784 ORTHO05D005762 3.4e-220 768.1 406 89.7
Glyma.09G004700 Glycine max HOM05D004784 ORTHO05D005762 4.5e-220 767.7 406 89.7
Sed0013135 Sechium edule HOM05D004784 ORTHO05D005762 5.9e-220 767.3 406 89.7
Thecc.06G223500 Theobroma cacao HOM05D004784 ORTHO05D005762 5.9e-220 767.3 406 90.4
ClCG03G004610 Citrullus lanatus HOM05D004784 ORTHO05D005762 7.7e-220 766.9 406 88.9
Duzib192G0808 Durio zibethinus HOM05D004784 ORTHO05D005762 7.7e-220 766.9 406 89.9
Glyma.07G262100 Glycine max HOM05D004784 ORTHO05D005762 1.0e-219 766.5 406 89.4
Hma1.2p1_0298F.1_g117720 Hydrangea macrophylla HOM05D004784 ORTHO05D005762 1.0e-219 766.5 404 90.8
CiPaw.09G093700 Carya illinoinensis HOM05D004784 ORTHO05D005762 1.7e-219 765.8 404 89.4
Ca_21072_v3 Cicer arietinum L. HOM05D004784 ORTHO05D005762 2.9e-219 765.0 406 88.9
Migut.M01336 Erythranthe guttata HOM05D004784 ORTHO05D005762 2.9e-219 765.0 408 89.7
COL.COLO4_31797 Corchorus olitorius HOM05D004784 ORTHO05D005762 3.8e-219 764.6 406 89.4
QL02p099920 Quercus lobata HOM05D004784 ORTHO05D005762 3.8e-219 764.6 407 89.4
Gohir.A05G171500 Gossypium hirsutum HOM05D004784 ORTHO05D005762 6.5e-219 763.8 406 89.7
Lj1A1232G87 Lonicera japonica HOM05D004784 ORTHO05D005762 6.5e-219 763.8 405 90.4
Lj6g0010262 Lotus japonicus HOM05D004784 ORTHO05D005762 6.5e-219 763.8 406 89.4
VMungo1215G1817 Vigna mungo HOM05D004784 ORTHO05D005762 6.5e-219 763.8 406 89.9
Gohir.D05G174600 Gossypium hirsutum HOM05D004784 ORTHO05D005762 8.5e-219 763.5 406 89.9
TWI38G1114 Tripterygium wilfordii HOM05D004784 ORTHO05D005762 8.5e-219 763.5 404 90.6
Prupe.4G018500 Prunus persica HOM05D004784 ORTHO05D005762 1.1e-218 763.1 407 88.9
arahy.Tifrunner.gnm1.ann1.EH8QHL Arachis hypogaea HOM05D004784 ORTHO05D005762 1.9e-218 762.3 406 89.2
Medtr4g132360 Medicago truncatula HOM05D004784 ORTHO05D005762 1.9e-218 762.3 406 88.9
Gohir.A06G149200 Gossypium hirsutum HOM05D004784 ORTHO05D005762 3.2e-218 761.5 406 89.2
FvH4_3g01820 Fragaria vesca HOM05D004784 ORTHO05D005762 4.2e-218 761.1 404 89.1
FAN25G0478 Fragaria x ananassa HOM05D004784 ORTHO05D005762 7.2e-218 760.4 404 89.1
Gorai.010G181500 Gossypium raimondii HOM05D004784 ORTHO05D005762 7.2e-218 760.4 406 88.9
Rhsim13G0152700 Rhododendron simsii HOM05D004784 ORTHO05D005762 9.4e-218 760.0 407 90.2
TWI63G0560 Tripterygium wilfordii HOM05D004784 ORTHO05D005762 1.2e-217 759.6 404 89.6
unitig_92.g28113 Utricularia gibba HOM05D004784 ORTHO05D005762 1.2e-217 759.6 406 88.4
Gohir.D06G155300 Gossypium hirsutum HOM05D004784 ORTHO05D005762 1.6e-217 759.2 406 88.9
RcHm_v2.0_Chr5g0002651 Rosa chinensis HOM05D004784 ORTHO05D005762 1.6e-217 759.2 404 88.9
TAR629G2745 Trochodendron aralioides HOM05D004784 ORTHO05D005762 2.7e-217 758.4 403 88.8
CiPaw.10G073000 Carya illinoinensis HOM05D004784 ORTHO05D005762 3.6e-217 758.1 404 88.9
TPR.G37066 Trifolium pratense HOM05D004784 ORTHO05D005762 3.6e-217 758.1 406 87.4
Glyma.15G109300 Glycine max HOM05D004784 ORTHO05D005762 6.1e-217 757.3 406 88.4
Potri.004G009600 Populus trichocarpa HOM05D004784 ORTHO05D005762 8.0e-217 756.9 404 88.6
MD10G1323700 Malus domestica HOM05D004784 ORTHO05D005762 1.4e-216 756.1 407 88.7
Lalb_Chr15g0087671 Lupinus albus HOM05D004784 ORTHO05D005762 3.9e-216 754.6 407 88.2
CANSAT56G2555 Cannabis sativa HOM05D004784 ORTHO05D005762 5.2e-216 754.2 406 88.2
FAN21G1227 Fragaria x ananassa HOM05D004784 ORTHO05D005762 5.2e-216 754.2 404 88.4
Potri.011G006800 Populus trichocarpa HOM05D004784 ORTHO05D005762 6.7e-216 753.8 404 88.4
PGR142G1596 Punica granatum HOM05D004784 ORTHO05D005762 6.7e-216 753.8 406 88.7
vmacro03682 Vaccinium macrocarpon HOM05D004784 ORTHO05D005762 1.1e-215 753.1 419 87.4
Nn1g03473 Nelumbo nucifera HOM05D004784 ORTHO05D005762 1.5e-215 752.7 448 82.1
Haze_06821 Corylus avellana HOM05D004784 ORTHO05D005762 2.6e-215 751.9 404 87.9
Phvul.006G148700 Phaseolus vulgaris HOM05D004784 ORTHO05D005762 2.6e-215 751.9 405 87.9
Sabra11G0005900 Salix brachista HOM05D004784 ORTHO05D005762 7.4e-215 750.4 404 87.9
Cfa000202 Carpinus fangiana HOM05D004784 ORTHO05D005762 9.7e-215 750.0 404 87.6
Eucgr.L02773 Eucalyptus grandis HOM05D004784 ORTHO05D005762 1.3e-214 749.6 404 87.9
DCAR_008168 Daucus carota HOM05D004784 ORTHO05D005762 3.7e-214 748.0 419 85.9
Atru.chr10.2254 Acer truncatum HOM05D004784 ORTHO05D005762 8.2e-214 746.9 404 87.6
MSTRG.14637 Avicennia marina HOM05D004784 ORTHO05D005762 8.2e-214 746.9 407 87.2
Psat4g005920 Pisum sativum HOM05D004784 ORTHO05D005762 8.2e-214 746.9 407 87.0
Sp1g10470 Schrenkiella parvula HOM05D004784 ORTHO05D005762 8.2e-214 746.9 407 87.2
A09p64310 Brassica napus HOM05D004784 ORTHO05D005762 1.1e-213 746.5 407 87.0
BolC8t52329H Brassica oleracea HOM05D004784 ORTHO05D005762 1.1e-213 746.5 407 87.0
BraA09t41774Z Brassica rapa HOM05D004784 ORTHO05D005762 1.1e-213 746.5 407 87.0
Hund23455 Selenicereus undatus HOM05D004784 ORTHO05D005762 1.1e-213 746.5 404 87.9
Ciclev10015433m.g Citrus clementina HOM05D004784 ORTHO05D005762 1.4e-213 746.1 408 88.0
Hund21422 Selenicereus undatus HOM05D004784 ORTHO05D005762 2.4e-213 745.3 404 86.9
Aqoxy1G03119 Aquilegia oxysepala HOM05D004784 ORTHO05D005762 3.1e-213 745.0 404 86.4
arahy.Tifrunner.gnm1.ann1.PLZ2LX Arachis hypogaea HOM05D004784 ORTHO05D005762 4.1e-213 744.6 398 88.9
C08p47920 Brassica napus HOM05D004784 ORTHO05D005762 5.3e-213 744.2 407 86.7
Thhalv10007781m.g Eutrema salsugineum HOM05D004784 ORTHO05D005762 7.0e-213 743.8 407 87.0
MBI02_g15378_MAGBIO Magnolia biondii HOM05D004784 ORTHO05D005762 1.2e-212 743.0 408 87.5
THA.LOC104809494 Tarenaya hassleriana HOM05D004784 ORTHO05D005762 1.2e-212 743.0 407 86.7
AT1G11860 Arabidopsis thaliana HOM05D004784 ORTHO05D005762 1.6e-212 742.7 407 86.5
CARHR012170 Cardamine hirsuta HOM05D004784 ORTHO05D005762 3.5e-212 741.5 407 86.2
AL1G23030 Arabidopsis lyrata HOM05D004784 ORTHO05D005762 7.7e-212 740.3 407 86.0
SGA_v2.0_scaffold7G03812 Striga asiatica HOM05D004784 ORTHO05D005762 7.7e-212 740.3 431 83.8
Aa31LG1G2870 Aethionema arabicum HOM05D004784 ORTHO05D005762 1.3e-211 739.6 407 86.5
RhsimUnG0232700 Rhododendron simsii HOM05D004784 ORTHO05D005762 1.7e-211 739.2 450 81.6
Sc24g0000220 Simmondsia chinensis HOM05D004784 ORTHO05D005762 3.8e-211 738.0 406 86.0
Carub.0001s1151 Capsella rubella HOM05D004784 ORTHO05D005762 5.0e-211 737.6 407 86.0
Ah.09g234740 Amaranthus hybridus HOM05D004784 ORTHO05D005762 6.5e-211 737.3 407 86.7
BraA08t35239Z Brassica rapa HOM05D004784 ORTHO05D005762 6.5e-211 737.3 408 86.8
AUR62022970 Chenopodium quinoa HOM05D004784 ORTHO05D005762 1.1e-210 736.5 406 85.5
C08p14960 Brassica napus HOM05D004784 ORTHO05D005762 1.5e-210 736.1 408 86.3
BolC8t49127H Brassica oleracea HOM05D004784 ORTHO05D005762 1.5e-210 736.1 408 86.3
PSO541G3045 Papaver somniferum HOM05D004784 ORTHO05D005762 2.5e-210 735.3 405 84.7
AUR62012328 Chenopodium quinoa HOM05D004784 ORTHO05D005762 5.5e-210 734.2 406 85.2
PSO675G1799 Papaver somniferum HOM05D004784 ORTHO05D005762 5.5e-210 734.2 405 84.4
vmacro22539 Vaccinium macrocarpon HOM05D004784 ORTHO05D005762 7.2e-210 733.8 470 78.1
CDE05G1701 Ceratophyllum demersum HOM05D004784 ORTHO05D005762 1.2e-209 733.0 406 85.5
Ah.14g087950 Amaranthus hybridus HOM05D004784 ORTHO05D005762 1.6e-209 732.6 404 85.9
CDE02G4424 Ceratophyllum demersum HOM05D004784 ORTHO05D005762 4.0e-208 728.0 406 85.5
Sc05g0009310 Simmondsia chinensis HOM05D004784 ORTHO05D005762 2.0e-207 725.7 406 84.0
Nn030s41595 Nelumbo nucifera HOM05D004784 ORTHO05D005762 1.7e-206 722.6 378 91.0
Oeu040336.3 Olea europaea HOM05D004784 ORTHO05D005762 6.3e-206 720.7 515 71.7
Lsat_1_v5_gn_7_16480 Lactuca sativa HOM05D004784 ORTHO05D005762 2.4e-205 718.8 403 85.6
Gorai.009G179900 Gossypium raimondii HOM05D004784 ORTHO05D005762 5.3e-205 717.6 383 90.1
Sabra04G0005000 Salix brachista HOM05D004784 ORTHO05D005762 4.5e-204 714.5 382 89.0
EL10Ac6g15683 Beta vulgaris HOM05D004784 ORTHO05D005762 2.2e-203 712.2 447 76.7
HPP92_004130 Vanilla planifolia HOM05D004784 ORTHO05D005762 2.6e-199 698.7 408 81.9
ATR0794G107 Amborella trichopoda HOM05D004784 ORTHO05D005762 1.3e-198 696.4 415 82.2
A08p33210 Brassica napus HOM05D004784 ORTHO05D005762 1.7e-198 696.0 408 83.1
GSVIVG01012702001 Vitis vinifera HOM05D004784 ORTHO05D005762 1.0e-195 686.8 356 91.6
HanXRQChr15g0470421 Helianthus annuus HOM05D004784 ORTHO05D005762 4.2e-194 681.4 357 90.8
Os04g0623800 Oryza sativa ssp. japonica HOM05D004784 ORTHO05D005762 2.0e-191 672.5 399 79.4
SEGI_27497 Sequoiadendron giganteum HOM05D004784 ORTHO05D005762 7.5e-191 670.6 407 76.9
Zm00001eb070250 Zea mays HOM05D004784 ORTHO05D005762 4.1e-189 664.8 377 82.5
ECA236G1893 Erigeron canadensis HOM05D004784 ORTHO05D005762 5.4e-189 664.5 406 79.8
BcaB03g13227 Brassica carinata HOM05D004784 ORTHO05D005762 2.0e-188 662.5 356 87.6
Pp3c12_9500 Physcomitrium patens HOM05D004784 ORTHO05D005762 6.0e-180 634.4 410 72.9
Pp3c4_15010 Physcomitrium patens HOM05D004784 ORTHO05D005762 6.0e-180 634.4 412 72.6
Mapoly0129s0024 Marchantia polymorpha HOM05D004784 ORTHO05D005762 2.0e-175 619.4 405 71.1
AagrBONN_evm.TU.Sc2ySwM_344.1952 Anthoceros agrestis HOM05D004784 ORTHO05D005762 6.4e-174 614.4 406 71.7
TAR627G1106 Trochodendron aralioides HOM05D004784 ORTHO05D005762 9.5e-170 600.5 317 89.0
SMO352G0047 Selaginella moellendorffii HOM05D004784 ORTHO05D005762 4.6e-164 581.6 387 70.8
CSS0014504 Camellia sinensis var. sinensis HOM05D004784 ORTHO05D005762 1.2e-161 573.5 389 74.8
A06p08340 Brassica napus HOM05D004784 ORTHO05D005762 5.4e-157 558.1 407 70.0
TAR626G0807 Trochodendron aralioides HOM05D004784 ORTHO05D005762 2.7e-148 529.3 282 89.0
Actinidia26902 Actinidia chinensis HOM05D004784 ORTHO05D005762 2.1e-145 519.6 310 83.9
Cre03.g193750 Chlamydomonas reinhardtii HOM05D004784 ORTHO05D005762 1.9e-141 506.5 400 61.8
Eucgr.E03909 Eucalyptus grandis HOM05D004784 ORTHO05D005762 1.3e-129 467.2 245 91.0
Atru.chr8.533 Acer truncatum HOM05D004784 ORTHO05D005762 3.7e-129 465.7 255 85.9
PRCOL_00007041 Prasinoderma coloniale HOM05D004784 ORTHO05D005762 2.9e-126 456.1 369 61.5
MCO15G045 Micromonas commoda HOM05D004784 ORTHO05D005762 5.3e-120 435.3 383 55.9
MD05G1348800 Malus domestica HOM05D004784 ORTHO05D005762 1.3e-118 430.6 238 86.1
Lalb_Chr20g0118761 Lupinus albus HOM05D004784 ORTHO05D005762 1.2e-116 424.1 227 87.7
BraA06t24032Z Brassica rapa HOM05D000911 ORTHO05D001266 9.4e-109 397.9 239 79.9
Cpa.g.sc152.29 Carica papaya HOM05D004784 ORTHO05D005762 4.2e-101 372.5 195 90.8
Cfa026602 Carpinus fangiana HOM05D004784 ORTHO05D005762 1.3e-81 307.8 419 43.2
Haze_26660 Corylus avellana HOM05D004784 ORTHO05D005762 9.5e-77 291.6 390 44.4
Sopen07g011340 Solanum pennellii HOM05D004784 ORTHO05D005762 1.0e-75 288.1 181 78.5
CBR_g24348 Chara braunii HOM05D004784 ORTHO05D005762 2.4e-72 276.9 180 75.6
EL10Ac1g01135 Beta vulgaris HOM05D004784 ORTHO05D005762 1.8e-59 234.2 141 76.6
EL10Ac2g03767 Beta vulgaris HOM05D004784 ORTHO05D005762 3.1e-59 233.4 140 77.1
Atru.chr8.531 Acer truncatum HOM05D004784 ORTHO05D005762 2.3e-54 217.2 124 81.5
Actinidia05506 Actinidia chinensis HOM05D004784 ORTHO05D005762 5.8e-50 202.6 130 79.2
Actinidia15969 Actinidia chinensis HOM05D004784 ORTHO05D058202 1.3e-20 105.1 128 47.7
Actinidia11861 Actinidia chinensis HOM05D004784 ORTHO05D005762 6.2e-20 102.8 58 75.9
PGR042G0448 Punica granatum HOM05D006894 ORTHO05D008724 6.2e-12 76.3 328 23.2


User provided reference genes

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