Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0007792g0050 Nicotiana tabacum HOM05D004725 ORTHO05D005683 2.9e-42 174.9 90 100.0
PGSC0003DMG400007347 Solanum tuberosum HOM05D004725 ORTHO05D005683 1.2e-16 89.7 91 58.2
Nitab4.5_0000160g0190 Nicotiana tabacum HOM05D004725 ORTHO05D005683 2.1e-16 89.0 91 58.2
Nitab4.5_0002789g0040 Nicotiana tabacum HOM05D004725 ORTHO05D005683 2.1e-16 89.0 91 58.2
CAN.G598.3 Capsicum annuum HOM05D004725 ORTHO05D005683 3.5e-16 88.2 91 58.2
Solyc11g065900.2 Solanum lycopersicum HOM05D004725 ORTHO05D005683 3.5e-16 88.2 91 58.2
Sopen11g025640 Solanum pennellii HOM05D004725 ORTHO05D005683 3.5e-16 88.2 91 58.2
DCAR_030461 Daucus carota HOM05D004725 ORTHO05D005683 3.0e-15 85.1 91 53.8
Lj3A833G37 Lonicera japonica HOM05D004725 ORTHO05D005683 3.9e-15 84.7 78 56.4
Dinv15152 Davidia involucrata HOM05D004725 ORTHO05D005683 1.2e-13 79.7 66 59.1
Peaxi162Scf00057g02232 Petunia axillaris HOM05D004725 ORTHO05D005683 1.2e-13 79.7 91 50.5
Nn3g21748 Nelumbo nucifera HOM05D004725 ORTHO05D005683 1.6e-13 79.3 66 59.1
GSVIVG01034975001 Vitis vinifera HOM05D004725 ORTHO05D005683 1.6e-13 79.3 66 59.1
Lsat_1_v5_gn_8_139661 Lactuca sativa HOM05D004725 ORTHO05D005683 2.1e-13 79.0 66 59.1
Haze_01314 Corylus avellana HOM05D004725 ORTHO05D005683 3.6e-13 78.2 78 53.8
Oeu038772.1 Olea europaea HOM05D004725 ORTHO05D005683 6.2e-13 77.4 78 52.6
Aqoxy6G02121 Aquilegia oxysepala HOM05D004725 ORTHO05D005683 1.4e-12 76.3 78 53.8
Cc00_g03440 Coffea canephora HOM05D004725 ORTHO05D005683 1.4e-12 76.3 78 52.6
CSS0037380 Camellia sinensis var. sinensis HOM05D004725 ORTHO05D005683 2.4e-12 75.5 66 59.1
CiPaw.02G073900 Carya illinoinensis HOM05D004725 ORTHO05D005683 3.1e-12 75.1 66 60.6
Ah.13g071340 Amaranthus hybridus HOM05D004725 ORTHO05D005683 5.3e-12 74.3 78 47.4
Ciclev10005849m.g Citrus clementina HOM05D004725 ORTHO05D005683 6.9e-12 73.9 66 56.1
ECA236G4776 Erigeron canadensis HOM05D004725 ORTHO05D005683 6.9e-12 73.9 78 50.0
HanXRQChr10g0291591 Helianthus annuus HOM05D004725 ORTHO05D005683 6.9e-12 73.9 78 51.3
HanXRQChr17g0554971 Helianthus annuus HOM05D004725 ORTHO05D005683 6.9e-12 73.9 78 51.3
EL10Ac3g05524 Beta vulgaris HOM05D004725 ORTHO05D005683 1.2e-11 73.2 78 48.7
Thecc.04G302700 Theobroma cacao HOM05D004725 ORTHO05D005683 1.2e-11 73.2 66 56.1
TAR376G0735 Trochodendron aralioides HOM05D004725 ORTHO05D005683 1.2e-11 73.2 66 53.0
Atru.chr4.3042 Acer truncatum HOM05D004725 ORTHO05D005683 1.5e-11 72.8 66 54.5
QL06p012630 Quercus lobata HOM05D004725 ORTHO05D005683 1.5e-11 72.8 78 51.3
AUR62039263 Chenopodium quinoa HOM05D004725 ORTHO05D005683 2.0e-11 72.4 66 53.0
COL.COLO4_09634 Corchorus olitorius HOM05D004725 ORTHO05D005683 2.0e-11 72.4 66 56.1
COL.COLO4_34597 Corchorus olitorius HOM05D004725 ORTHO05D005683 2.0e-11 72.4 66 56.1
Cpa.g.sc9.42 Carica papaya HOM05D004725 ORTHO05D005683 2.6e-11 72.0 80 48.8
MSTRG.3853 Avicennia marina HOM05D004725 ORTHO05D005683 3.4e-11 71.6 78 48.7
SGA_v2.0_scaffold157G37322 Striga asiatica HOM05D004725 ORTHO05D005683 3.4e-11 71.6 78 50.0
CAN.G327.11 Capsicum annuum HOM05D004725 ORTHO05D005683 4.4e-11 71.2 66 62.1
Duzib212G0103 Durio zibethinus HOM05D004725 ORTHO05D005683 4.4e-11 71.2 66 56.1
Gohir.A10G173400 Gossypium hirsutum HOM05D004725 ORTHO05D005683 4.4e-11 71.2 66 54.5
Gohir.D10G179900 Gossypium hirsutum HOM05D004725 ORTHO05D005683 4.4e-11 71.2 66 54.5
MBI18_g03518_MAGBIO Magnolia biondii HOM05D004725 ORTHO05D005683 4.4e-11 71.2 65 53.8
Gorai.011G201500 Gossypium raimondii HOM05D004725 ORTHO05D005683 5.8e-11 70.9 66 54.5
Manes.03G206000 Manihot esculenta HOM05D004725 ORTHO05D005683 5.8e-11 70.9 66 53.0
SalBow8G1743 Salvia bowleyana HOM05D004725 ORTHO05D005683 5.8e-11 70.9 78 48.7
Lalb_Chr20g0110441 Lupinus albus HOM05D004725 ORTHO05D005683 7.6e-11 70.5 66 56.1
Prupe.1G115500 Prunus persica HOM05D004725 ORTHO05D005683 7.6e-11 70.5 66 56.1
Sc25g0003230 Simmondsia chinensis HOM05D004725 ORTHO05D005683 7.6e-11 70.5 53 64.2
AL8G22680 Arabidopsis lyrata HOM05D004725 ORTHO05D005683 9.9e-11 70.1 80 47.5
Eucgr.D00314 Eucalyptus grandis HOM05D004725 ORTHO05D005683 1.3e-10 69.7 66 56.1
SalBow6G0528 Salvia bowleyana HOM05D004725 ORTHO05D005683 1.3e-10 69.7 78 48.7
Carub.0008s0882 Capsella rubella HOM05D004725 ORTHO05D005683 2.2e-10 68.9 80 46.2
Carub.0008s0897 Capsella rubella HOM05D004725 ORTHO05D005683 2.2e-10 68.9 80 46.2
CDE02G0725 Ceratophyllum demersum HOM05D004725 ORTHO05D005683 2.9e-10 68.6 52 61.5
VMungo0331G0107 Vigna mungo HOM05D004725 ORTHO05D005683 2.9e-10 68.6 66 54.5
AL8G22360 Arabidopsis lyrata HOM05D004725 ORTHO05D005683 3.8e-10 68.2 80 46.2
AT5G49010 Arabidopsis thaliana HOM05D004725 ORTHO05D005683 3.8e-10 68.2 80 46.2
Ca_09654_v3 Cicer arietinum L. HOM05D004725 ORTHO05D005683 3.8e-10 68.2 66 56.1
MD13G1151200 Malus domestica HOM05D004725 ORTHO05D005683 3.8e-10 68.2 63 55.6
Oeu001165.1 Olea europaea HOM05D004725 ORTHO05D005683 3.8e-10 68.2 102 42.2
Phvul.010G140100 Phaseolus vulgaris HOM05D004725 ORTHO05D005683 3.8e-10 68.2 66 54.5
unitig_37.g12782 Utricularia gibba HOM05D004725 ORTHO05D005683 3.8e-10 68.2 89 44.9
CARHR056790 Cardamine hirsuta HOM05D004725 ORTHO05D005683 6.4e-10 67.4 79 45.6
Dinv44275 Davidia involucrata HOM05D004725 ORTHO05D005683 6.4e-10 67.4 79 48.1
TPR.G27119 Trifolium pratense HOM05D004725 ORTHO05D005683 1.1e-09 66.6 66 54.5
Aa31LG11G8130 Aethionema arabicum HOM05D004725 ORTHO05D005683 1.4e-09 66.2 80 45.0
Lj3g0003769 Lotus japonicus HOM05D004725 ORTHO05D005683 1.4e-09 66.2 66 54.5
MD16G1152100 Malus domestica HOM05D004725 ORTHO05D005683 1.4e-09 66.2 63 54.0
Ca_02282_v3 Cicer arietinum L. HOM05D004725 ORTHO05D005683 1.9e-09 65.9 66 54.5
THA.LOC104827096 Tarenaya hassleriana HOM05D004725 ORTHO05D005683 1.9e-09 65.9 66 47.0
CANSAT35G1772 Cannabis sativa HOM05D004725 ORTHO05D005683 2.4e-09 65.5 66 53.0
Glyma.08G194400 Glycine max HOM05D004725 ORTHO05D005683 2.4e-09 65.5 91 45.1
Medtr2g044210 Medicago truncatula HOM05D004725 ORTHO05D005683 2.4e-09 65.5 66 53.0
Psat1g138600 Pisum sativum HOM05D004725 ORTHO05D005683 3.2e-09 65.1 66 53.0
CsaV3_3G008790 Cucumis sativus L. HOM05D004725 ORTHO05D005683 5.4e-09 64.3 76 43.4
Zm00001eb108600 Zea mays HOM05D004725 ORTHO05D005683 5.4e-09 64.3 67 46.3
Actinidia31555 Actinidia chinensis HOM05D004725 ORTHO05D005683 7.1e-09 63.9 52 65.4
arahy.Tifrunner.gnm1.ann1.NMZ4WG Arachis hypogaea HOM05D004725 ORTHO05D005683 7.1e-09 63.9 66 50.0
Migut.G00073 Erythranthe guttata HOM05D004725 ORTHO05D005683 9.3e-09 63.5 66 51.5
Potri.008G103800 Populus trichocarpa HOM05D004725 ORTHO05D005683 9.3e-09 63.5 66 50.0
BcaC06g30731 Brassica carinata HOM05D004725 ORTHO05D005683 1.2e-08 63.2 79 44.3
vmacro08028 Vaccinium macrocarpon HOM05D004725 ORTHO05D005683 1.2e-08 63.2 62 58.1
ATR0691G022 Amborella trichopoda HOM05D004725 ORTHO05D005683 1.6e-08 62.8 65 47.7
arahy.Tifrunner.gnm1.ann1.ASV3U0 Arachis hypogaea HOM05D004725 ORTHO05D005683 1.6e-08 62.8 66 48.5
Thhalv10004892m.g Eutrema salsugineum HOM05D004725 ORTHO05D005683 1.6e-08 62.8 79 44.3
Os05g0143400 Oryza sativa ssp. japonica HOM05D004725 ORTHO05D005683 1.6e-08 62.8 64 46.9
PGR031G0191 Punica granatum HOM05D004725 ORTHO05D005683 1.6e-08 62.8 75 46.7
Sabra08G0078400 Salix brachista HOM05D004725 ORTHO05D005683 1.6e-08 62.8 66 48.5
SHI00123 Sapria himalayana HOM05D004725 ORTHO05D005683 2.1e-08 62.4 67 49.3
Sp2g19380 Schrenkiella parvula HOM05D004725 ORTHO05D005683 3.5e-08 61.6 79 43.0
ClCG05G001400 Citrullus lanatus HOM05D004725 ORTHO05D005683 4.6e-08 61.2 76 44.7
PSO384G4206 Papaver somniferum HOM05D004725 ORTHO05D005683 6.0e-08 60.8 75 41.3
RcHm_v2.0_Chr4g0425721 Rosa chinensis HOM05D004725 ORTHO05D005683 1.0e-07 60.1 66 48.5
HPP92_026067 Vanilla planifolia HOM05D004725 ORTHO05D005683 1.0e-07 60.1 63 49.2
FvH4_4g13700 Fragaria vesca HOM05D004725 ORTHO05D005683 1.3e-07 59.7 66 48.5
FAN12G0808 Fragaria x ananassa HOM05D004725 ORTHO05D005683 1.3e-07 59.7 66 48.5
SEGI_00745 Sequoiadendron giganteum HOM05D004725 ORTHO05D005683 1.3e-07 59.7 77 44.2
TWI09G0594 Tripterygium wilfordii HOM05D004725 ORTHO05D005683 1.3e-07 59.7 80 41.2
BcaC06g30733 Brassica carinata HOM05D004725 ORTHO05D005683 1.7e-07 59.3 79 41.8
A06p38630 Brassica napus HOM05D004725 ORTHO05D005683 1.7e-07 59.3 79 41.8
C07p39630 Brassica napus HOM05D004725 ORTHO05D005683 1.7e-07 59.3 79 41.8
BolC7t44486H Brassica oleracea HOM05D004725 ORTHO05D005683 1.7e-07 59.3 79 41.8
BraA06t26778Z Brassica rapa HOM05D004725 ORTHO05D005683 1.7e-07 59.3 79 41.8
FAN07G1636 Fragaria x ananassa HOM05D004725 ORTHO05D005683 3.0e-07 58.5 67 47.8
HPP92_027744 Vanilla planifolia HOM05D004725 ORTHO05D005683 3.0e-07 58.5 63 47.6
Sed0009995 Sechium edule HOM05D004725 ORTHO05D005683 6.6e-07 57.4 64 46.9
PSO782G1146 Papaver somniferum HOM05D004725 ORTHO05D005683 8.7e-07 57.0 75 40.0
Atru.chr3.3242 Acer truncatum HOM05D004725 ORTHO05D005683 9.6e-06 53.5 47 63.8
AagrBONN_evm.TU.Sc2ySwM_228.2917 Anthoceros agrestis HOM05D004725 ORTHO05D005683 9.6e-06 53.5 75 37.3
AUR62016226 Chenopodium quinoa HOM05D004725 ORTHO05D005683 9.6e-06 53.5 41 63.4
Glyma.07G011200 Glycine max HOM05D004725 ORTHO05D005683 9.6e-06 53.5 66 45.5


User provided reference genes

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