Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0007749g0010 Nicotiana tabacum HOM05D005375 ORTHO05D006598 2.8e-220 768.5 438 100.0
Nitab4.5_0001160g0010 Nicotiana tabacum HOM05D005375 ORTHO05D006598 4.1e-203 711.4 438 91.1
CAN.G337.55 Capsicum annuum HOM05D005375 ORTHO05D006598 1.4e-171 606.7 461 76.4
PGSC0003DMG400022298 Solanum tuberosum HOM05D005375 ORTHO05D006598 4.2e-171 605.1 439 79.0
Nitab4.5_0004445g0070 Nicotiana tabacum HOM05D005375 ORTHO05D006598 9.0e-166 587.4 438 71.9
Nitab4.5_0005078g0020 Nicotiana tabacum HOM05D005375 ORTHO05D006598 9.9e-157 557.4 438 70.5
Peaxi162Scf00235g00721 Petunia axillaris HOM05D005375 ORTHO05D006598 4.9e-156 555.1 455 72.7
Solyc07g064980.3 Solanum lycopersicum HOM05D005375 ORTHO05D006598 1.9e-144 516.5 439 69.2
CSS0047507 Camellia sinensis var. sinensis HOM05D005375 ORTHO05D006598 3.2e-139 499.2 439 63.1
CSS0031566 Camellia sinensis var. sinensis HOM05D005375 ORTHO05D006598 6.1e-138 495.0 458 64.6
Sopen07g033190 Solanum pennellii HOM05D005375 ORTHO05D006598 1.0e-137 494.2 438 67.8
Manes.03G136300 Manihot esculenta HOM05D005375 ORTHO05D006598 8.8e-137 491.1 441 66.2
Rhsim06G0223700 Rhododendron simsii HOM05D005375 ORTHO05D006598 3.7e-135 485.7 441 62.1
CSS0021148 Camellia sinensis var. sinensis HOM05D005375 ORTHO05D006598 2.6e-133 479.6 444 61.5
SGA_v2.0_scaffold8G04388 Striga asiatica HOM05D005375 ORTHO05D006598 3.8e-132 475.7 444 61.0
ECA240G0086 Erigeron canadensis HOM05D005375 ORTHO05D006598 8.5e-132 474.6 444 65.8
Ciclev10008309m.g Citrus clementina HOM05D005375 ORTHO05D006598 5.5e-131 471.9 457 62.6
TWI38G0072 Tripterygium wilfordii HOM05D005375 ORTHO05D006598 3.0e-129 466.1 447 62.6
MSTRG.6961 Avicennia marina HOM05D005375 ORTHO05D006598 3.3e-128 462.6 438 60.3
Cfa020276 Carpinus fangiana HOM05D005375 ORTHO05D006598 1.3e-127 460.7 459 62.1
Dinv22229 Davidia involucrata HOM05D005375 ORTHO05D006598 1.3e-127 460.7 441 62.6
TAR627G0180 Trochodendron aralioides HOM05D005375 ORTHO05D006598 3.7e-127 459.1 442 64.5
Thecc.07G027900 Theobroma cacao HOM05D005375 ORTHO05D006598 5.3e-126 455.3 442 62.2
MSTRG.12999 Avicennia marina HOM05D005375 ORTHO05D006598 2.0e-125 453.4 437 60.0
Migut.M01705 Erythranthe guttata HOM05D005375 ORTHO05D006598 4.5e-125 452.2 443 58.7
Cc05_g14340 Coffea canephora HOM05D005375 ORTHO05D006598 2.2e-124 449.9 449 62.8
HanXRQChr13g0408271 Helianthus annuus HOM05D005375 ORTHO05D006598 2.9e-124 449.5 455 63.3
AUR62015884 Chenopodium quinoa HOM05D005375 ORTHO05D006598 3.8e-124 449.1 478 55.9
Potri.011G082000 Populus trichocarpa HOM05D005375 ORTHO05D006598 3.8e-124 449.1 439 64.7
Dinv40796 Davidia involucrata HOM05D005375 ORTHO05D006598 3.6e-122 442.6 475 57.1
Atru.chr2.3553 Acer truncatum HOM05D005375 ORTHO05D006598 4.7e-122 442.2 446 62.6
ClCG10G005050 Citrullus lanatus HOM05D005375 ORTHO05D006598 4.7e-122 442.2 472 56.8
vmacro22307 Vaccinium macrocarpon HOM05D005375 ORTHO05D006598 8.0e-122 441.4 496 55.4
Atru.chr2.3534 Acer truncatum HOM05D005375 ORTHO05D006598 1.8e-121 440.3 455 61.5
QL08p007584 Quercus lobata HOM05D005375 ORTHO05D006598 1.8e-121 440.3 443 62.1
MD03G1294800 Malus domestica HOM05D005375 ORTHO05D006598 2.3e-121 439.9 445 60.4
TAR629G0374 Trochodendron aralioides HOM05D005375 ORTHO05D006598 3.9e-121 439.1 438 58.9
AUR62020339 Chenopodium quinoa HOM05D005375 ORTHO05D006598 4.4e-120 435.6 446 58.5
Duzib170G0122 Durio zibethinus HOM05D005375 ORTHO05D006598 4.4e-120 435.6 439 60.4
CsaV3_3G004730 Cucumis sativus L. HOM05D005375 ORTHO05D006598 1.3e-119 434.1 444 58.1
Aqoxy1G04123 Aquilegia oxysepala HOM05D005375 ORTHO05D006598 4.8e-119 432.2 451 55.9
Gohir.D05G374900 Gossypium hirsutum HOM05D005375 ORTHO05D006598 1.1e-118 431.0 480 54.4
Sabra11G0065600 Salix brachista HOM05D005375 ORTHO05D006598 1.1e-118 431.0 476 59.5
EL10Ac4g07689 Beta vulgaris HOM05D005375 ORTHO05D006598 2.4e-118 429.9 469 57.8
MD00G1179000 Malus domestica HOM05D005375 ORTHO05D006598 2.4e-118 429.9 445 59.1
HanXRQChr03g0076881 Helianthus annuus HOM05D005375 ORTHO05D006598 3.1e-118 429.5 445 58.7
Gorai.009G443800 Gossypium raimondii HOM05D005375 ORTHO05D006598 4.1e-118 429.1 480 54.2
Gohir.A04G011700 Gossypium hirsutum HOM05D005375 ORTHO05D006598 5.3e-118 428.7 480 54.4
Phvul.008G272700 Phaseolus vulgaris HOM05D005375 ORTHO05D006598 9.1e-118 427.9 497 56.5
DCAR_022591 Daucus carota HOM05D005375 ORTHO05D006598 1.6e-117 427.2 450 57.6
Glyma.14G018200 Glycine max HOM05D005375 ORTHO05D006598 1.6e-117 427.2 504 56.0
Glyma.02G295200 Glycine max HOM05D005375 ORTHO05D006598 2.0e-117 426.8 485 58.1
FAN13G1970 Fragaria x ananassa HOM05D005375 ORTHO05D006598 2.6e-117 426.4 491 56.4
FAN04G2161 Fragaria x ananassa HOM05D005375 ORTHO05D006598 5.9e-117 425.2 491 55.4
Prupe.8G266900 Prunus persica HOM05D005375 ORTHO05D006598 9.4e-115 417.9 452 58.6
FvH4_5g39180 Fragaria vesca HOM05D005375 ORTHO05D006598 1.6e-114 417.2 492 55.3
FAN18G4382 Fragaria x ananassa HOM05D005375 ORTHO05D006598 2.1e-114 416.8 492 55.9
Lj1C881T5 Lonicera japonica HOM05D005375 ORTHO05D006598 2.7e-114 416.4 425 62.4
Ca_06349_v3 Cicer arietinum L. HOM05D005375 ORTHO05D006598 1.8e-113 413.7 439 55.6
RcHm_v2.0_Chr7g0241441 Rosa chinensis HOM05D005375 ORTHO05D006598 1.2e-112 411.0 491 53.8
Psat2g009920 Pisum sativum HOM05D005375 ORTHO05D006598 4.4e-112 409.1 514 53.7
MELO3C014172.2 Cucumis melo HOM05D005375 ORTHO05D006598 2.2e-111 406.8 448 56.7
Migut.H01791 Erythranthe guttata HOM05D005375 ORTHO05D006598 4.8e-111 405.6 439 55.4
unitig_747.g21591 Utricularia gibba HOM05D005375 ORTHO05D006598 6.3e-111 405.2 443 55.5
PSO210G0227 Papaver somniferum HOM05D005375 ORTHO05D006598 1.1e-110 404.4 460 55.7
FAN08G1518 Fragaria x ananassa HOM05D005375 ORTHO05D006598 1.4e-110 404.1 489 54.4
TPR.G35360 Trifolium pratense HOM05D005375 ORTHO05D006598 3.1e-110 402.9 523 53.2
VMungo0647G1984 Vigna mungo HOM05D005375 ORTHO05D006598 1.2e-109 401.0 502 50.8
LjContig00272g0009776 Lotus japonicus HOM05D005375 ORTHO05D006598 2.0e-109 400.2 486 54.5
PSO302G0025 Papaver somniferum HOM05D005375 ORTHO05D006598 7.7e-109 398.3 459 54.9
Eucgr.F03508 Eucalyptus grandis HOM05D005375 ORTHO05D006598 6.5e-108 395.2 480 55.4
CiPaw.11G194800 Carya illinoinensis HOM05D005375 ORTHO05D006598 1.5e-107 394.0 447 55.0
Lsat_1_v5_gn_9_90720 Lactuca sativa HOM05D005375 ORTHO05D006598 2.7e-106 389.8 461 58.8
Hma1.2p1_1332F.1_g276150 Hydrangea macrophylla HOM05D005375 ORTHO05D006598 3.6e-106 389.4 442 58.8
CARHR234370 Cardamine hirsuta HOM05D005375 ORTHO05D006598 1.8e-105 387.1 462 54.5
Lj6g0028194 Lotus japonicus HOM05D005375 ORTHO05D006598 2.3e-105 386.7 475 55.4
Carub.0007s1409 Capsella rubella HOM05D005375 ORTHO05D006598 3.4e-104 382.9 446 54.5
Actinidia05060 Actinidia chinensis HOM05D005375 ORTHO05D006598 5.7e-104 382.1 428 55.8
AT4G26750 Arabidopsis thaliana HOM05D005375 ORTHO05D006598 9.8e-104 381.3 446 54.7
BolC1t02212H Brassica oleracea HOM05D005375 ORTHO05D006598 1.7e-103 380.6 446 57.6
THA.LOC104811633 Tarenaya hassleriana HOM05D005375 ORTHO05D006598 4.8e-103 379.0 442 52.9
Gohir.A01G084800 Gossypium hirsutum HOM05D005375 ORTHO05D006598 8.3e-103 378.3 444 55.6
Os06g0308800 Oryza sativa ssp. japonica HOM05D005375 ORTHO05D006598 3.1e-102 376.3 496 52.2
Aa31LG5G12180 Aethionema arabicum HOM05D005375 ORTHO05D006598 9.1e-102 374.8 457 56.0
Duzib268G0742 Durio zibethinus HOM05D005375 ORTHO05D006598 9.1e-102 374.8 442 55.0
Sp7g24730 Schrenkiella parvula HOM05D005375 ORTHO05D006598 2.0e-101 373.6 451 51.9
AL7G26080 Arabidopsis lyrata HOM05D005375 ORTHO05D006598 2.7e-101 373.2 446 54.0
Gorai.002G093900 Gossypium raimondii HOM05D005375 ORTHO05D006598 1.3e-100 370.9 444 54.5
Gohir.D01G071200 Gossypium hirsutum HOM05D005375 ORTHO05D006598 5.5e-99 365.5 444 54.1
COL.COLO4_09738 Corchorus olitorius HOM05D005375 ORTHO05D006598 2.1e-98 363.6 414 57.7
BraA01t01755Z Brassica rapa HOM05D000504 ORTHO05D000403 1.8e-97 360.5 445 57.5
ATR1101G026 Amborella trichopoda HOM05D005375 ORTHO05D006598 2.0e-96 357.1 451 50.3
Thhalv10025139m.g Eutrema salsugineum HOM05D005375 ORTHO05D006598 7.5e-96 355.1 448 56.0
PGR031G3708 Punica granatum HOM05D005375 ORTHO05D006598 2.8e-95 353.2 428 52.1
CANSAT11G2127 Cannabis sativa HOM05D005375 ORTHO05D006598 5.9e-93 345.5 468 52.1
A01p18000 Brassica napus HOM05D000504 ORTHO05D000403 2.9e-92 343.2 445 54.2
CDE07G0643 Ceratophyllum demersum HOM05D005375 ORTHO05D006598 8.6e-92 341.7 448 48.4
Medtr5g093880 Medicago truncatula HOM05D005375 ORTHO05D006598 8.6e-92 341.7 500 49.4
Oeu054311.1 Olea europaea HOM05D005375 ORTHO05D006598 3.3e-91 339.7 462 48.9
CDE04G3304 Ceratophyllum demersum HOM05D005375 ORTHO05D006598 4.3e-91 339.3 449 50.3
SEGI_32868 Sequoiadendron giganteum HOM05D005375 ORTHO05D006598 9.5e-91 338.2 490 48.2
C01p22820 Brassica napus HOM05D000504 ORTHO05D006598 8.0e-90 335.1 455 51.4
Sed0014032 Sechium edule HOM05D005375 ORTHO05D006598 1.8e-89 334.0 410 51.5
CSS0025851 Camellia sinensis var. sinensis HOM05D005375 ORTHO05D006598 2.6e-88 330.1 406 49.0
Nn1g07350 Nelumbo nucifera HOM05D005375 ORTHO05D006598 3.5e-85 319.7 476 45.2
GSVIVG01037729001 Vitis vinifera HOM05D005375 ORTHO05D006598 6.0e-85 318.9 191 83.2
Zm00001eb281230 Zea mays HOM05D005375 ORTHO05D006598 1.7e-84 317.4 447 46.1
Lalb_Chr04g0248131 Lupinus albus HOM05D005375 ORTHO05D006598 6.6e-84 315.5 520 48.1
DCAR_016648 Daucus carota HOM05D005375 ORTHO05D006598 5.2e-81 305.8 379 52.2
SMO271G0101 Selaginella moellendorffii HOM05D005375 ORTHO05D006598 1.5e-80 304.3 435 50.6
Lj8A173T72 Lonicera japonica HOM05D005375 ORTHO05D006598 9.8e-80 301.6 431 47.6
Cpa.g.sc284.2 Carica papaya HOM05D005375 ORTHO05D006598 1.9e-78 297.4 168 87.5
Lalb_Chr00c48g0412951 Lupinus albus HOM05D005375 ORTHO05D006598 3.0e-76 290.0 174 82.8
Mapoly0043s0080 Marchantia polymorpha HOM05D005375 ORTHO05D006598 3.9e-76 289.7 504 41.3
TAR624G1027 Trochodendron aralioides HOM05D005375 ORTHO05D006598 3.9e-76 289.7 192 76.6
HPP92_015778 Vanilla planifolia HOM05D005375 ORTHO05D006598 5.6e-75 285.8 170 82.4
Pp3c12_1420 Physcomitrium patens HOM05D005375 ORTHO05D006598 2.6e-72 276.9 468 42.5
Haze_09747 Corylus avellana HOM05D005375 ORTHO05D006598 3.2e-70 270.0 462 47.0
Sc16g0005720 Simmondsia chinensis HOM05D005375 ORTHO05D006598 1.0e-68 265.0 346 48.6
BcaC09g52262 Brassica carinata HOM05D005375 ORTHO05D006598 2.0e-64 250.8 386 48.2
PGR031G2801 Punica granatum HOM05D005375 ORTHO05D006598 1.3e-63 248.1 377 45.1
TWI39G0687 Tripterygium wilfordii HOM05D005375 ORTHO05D006598 2.6e-56 223.8 128 84.4
SHI26566 Sapria himalayana HOM05D005375 ORTHO05D006598 2.2e-55 220.7 491 37.3
Actinidia32285 Actinidia chinensis HOM05D005375 ORTHO05D006598 4.9e-55 219.5 317 47.6
AagrBONN_evm.TU.Sc2ySwM_368.1760 Anthoceros agrestis HOM05D005375 ORTHO05D006598 9.6e-51 205.3 389 37.8
Lalb_Chr00c48g0413001 Lupinus albus HOM05D005375 ORTHO05D006598 2.9e-47 193.7 172 62.2
Cre03.g145227 Chlamydomonas reinhardtii HOM05D005375 ORTHO05D006598 4.5e-40 169.9 157 56.1
CBR_g50394 Chara braunii HOM05D005375 ORTHO05D006598 1.9e-38 164.5 425 34.4
PRCOL_00004002 Prasinoderma coloniale HOM05D005375 ORTHO05D006598 3.0e-36 157.1 184 46.7
Nn1g03334 Nelumbo nucifera HOM05D005375 ORTHO05D006598 1.5e-32 144.8 406 32.8
MCO03G124 Micromonas commoda HOM05D005375 ORTHO05D006598 7.2e-30 136.0 147 46.3
Actinidia37374 Actinidia chinensis HOM05D005375 ORTHO05D006598 4.8e-26 123.2 337 33.8
Zm00001eb381490 Zea mays HOM05D005375 ORTHO05D006598 4.8e-26 123.2 159 45.9
Ah.06g182230 Amaranthus hybridus HOM05D005375 ORTHO05D006598 4.5e-24 116.7 65 89.2
Actinidia20957 Actinidia chinensis HOM05D005375 ORTHO05D006598 5.9e-24 116.3 94 64.9
Hund23196 Selenicereus undatus HOM05D005375 ORTHO05D006598 2.7e-21 107.5 97 61.9
TAR624G1433 Trochodendron aralioides HOM05D005375 ORTHO05D006598 1.0e-20 105.5 108 63.0
CAN.G396.4 Capsicum annuum HOM05D005375 ORTHO05D006598 3.4e-16 90.5 124 43.5
CAN.G4023.1 Capsicum annuum HOM05D005375 ORTHO05D006598 1.3e-15 88.6 103 49.5
MCO09G798 Micromonas commoda HOM05D005375 ORTHO05D006598 1.3e-15 88.6 155 37.4
PGR044G1312 Punica granatum HOM05D003929 ORTHO05D004499 1.1e-14 85.5 49 81.6
CAN.G396.14 Capsicum annuum HOM05D005375 ORTHO05D006598 2.1e-13 81.3 74 58.1
C08p09960 Brassica napus HOM05D000504 ORTHO05D000403 1.1e-11 75.5 408 26.2
BolC8t48673H Brassica oleracea HOM05D000504 ORTHO05D000403 1.1e-11 75.5 408 26.2
BcaC07g38248 Brassica carinata HOM05D005375 ORTHO05D006598 1.1e-09 68.9 92 48.9
vmacro14248 Vaccinium macrocarpon HOM05D005375 ORTHO05D426817 7.2e-06 56.2 40 72.5
CiPaw.13G170400 Carya illinoinensis HOM05D000230 ORTHO05D000176 9.4e-06 55.8 141 27.7


User provided reference genes

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