Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0007732g0020 Nicotiana tabacum HOM05D001969 ORTHO05D003463 2.3e-52 208.8 116 100.0
PGSC0003DMG400018321 Solanum tuberosum HOM05D001969 ORTHO05D003463 9.7e-19 97.1 123 44.7
Sopen07g028360 Solanum pennellii HOM05D001969 ORTHO05D003463 1.7e-18 96.3 65 69.2
Solyc07g054430.3 Solanum lycopersicum HOM05D001969 ORTHO05D003463 6.3e-18 94.4 123 44.7
CAN.G996.3 Capsicum annuum HOM05D001969 ORTHO05D003463 2.0e-16 89.4 65 64.6
Hma1.2p1_0565F.1_g179360 Hydrangea macrophylla HOM05D001969 ORTHO05D003463 5.0e-15 84.7 65 61.5
CSS0015749 Camellia sinensis var. sinensis HOM05D001969 ORTHO05D003463 8.5e-15 84.0 65 61.5
Dinv15475 Davidia involucrata HOM05D001969 ORTHO05D003463 8.5e-15 84.0 65 61.5
Rhsim06G0150200 Rhododendron simsii HOM05D001969 ORTHO05D003463 1.1e-14 83.6 65 61.5
Nitab4.5_0008772g0020 Nicotiana tabacum HOM05D001969 ORTHO05D003463 1.5e-14 83.2 117 45.3
TAR629G2626 Trochodendron aralioides HOM05D001969 ORTHO05D003463 1.5e-14 83.2 65 61.5
VMungo1215G0573 Vigna mungo HOM05D001969 ORTHO05D003463 1.5e-14 83.2 68 57.4
Duzib248G0568 Durio zibethinus HOM05D001969 ORTHO05D003463 1.9e-14 82.8 66 57.6
Actinidia09897 Actinidia chinensis HOM05D001969 ORTHO05D003463 2.5e-14 82.4 65 58.5
COL.COLO4_13692 Corchorus olitorius HOM05D001969 ORTHO05D003463 2.5e-14 82.4 66 57.6
Phvul.003G044600 Phaseolus vulgaris HOM05D001969 ORTHO05D003463 4.2e-14 81.6 65 58.5
Cfa014552 Carpinus fangiana HOM05D001969 ORTHO05D003463 7.2e-14 80.9 65 60.0
Thecc.02G173100 Theobroma cacao HOM05D001969 ORTHO05D003463 7.2e-14 80.9 66 54.5
TWI36G0604 Tripterygium wilfordii HOM05D001969 ORTHO05D003463 9.4e-14 80.5 65 56.9
CiPaw.03G170700 Carya illinoinensis HOM05D001969 ORTHO05D003463 1.2e-13 80.1 65 60.0
CiPaw.04G123200 Carya illinoinensis HOM05D001969 ORTHO05D003463 1.2e-13 80.1 65 60.0
QL10p048442 Quercus lobata HOM05D001969 ORTHO05D003463 1.6e-13 79.7 65 58.5
Glyma.01G070400 Glycine max HOM05D001969 ORTHO05D003463 2.1e-13 79.3 65 56.9
Lj1A735T46 Lonicera japonica HOM05D001969 ORTHO05D003463 2.1e-13 79.3 65 56.9
Manes.13G150800 Manihot esculenta HOM05D001969 ORTHO05D003463 2.1e-13 79.3 123 41.5
Nn1g06728 Nelumbo nucifera HOM05D001969 ORTHO05D003463 2.1e-13 79.3 65 56.9
Eucgr.A01786 Eucalyptus grandis HOM05D001969 ORTHO05D003463 2.7e-13 79.0 65 56.9
Oeu025510.1 Olea europaea HOM05D001969 ORTHO05D003463 3.6e-13 78.6 123 40.7
QL10p048424 Quercus lobata HOM05D001969 ORTHO05D003463 3.6e-13 78.6 65 58.5
FvH4_6g44870 Fragaria vesca HOM05D001969 ORTHO05D003463 4.7e-13 78.2 65 58.5
arahy.Tifrunner.gnm1.ann1.K8K0CL Arachis hypogaea HOM05D001969 ORTHO05D003463 6.1e-13 77.8 68 54.4
arahy.Tifrunner.gnm1.ann1.PKX56S Arachis hypogaea HOM05D001969 ORTHO05D003463 6.1e-13 77.8 68 54.4
vmacro12265 Vaccinium macrocarpon HOM05D001969 ORTHO05D003463 6.1e-13 77.8 65 56.9
Lalb_Chr22g0356391 Lupinus albus HOM05D001969 ORTHO05D003463 1.0e-12 77.0 68 54.4
Aqoxy1G02707 Aquilegia oxysepala HOM05D001969 ORTHO05D003463 1.4e-12 76.6 65 52.3
Glyma.02G127600 Glycine max HOM05D001969 ORTHO05D003463 1.4e-12 76.6 65 53.8
Medtr2g090060 Medicago truncatula HOM05D001969 ORTHO05D003463 1.4e-12 76.6 68 55.9
Prupe.3G232700 Prunus persica HOM05D001969 ORTHO05D003463 1.4e-12 76.6 65 56.9
Dinv23698 Davidia involucrata HOM05D001969 ORTHO05D003463 1.8e-12 76.3 65 55.4
FAN09G2888 Fragaria x ananassa HOM05D001969 ORTHO05D003463 2.3e-12 75.9 65 56.9
FAN14G3823 Fragaria x ananassa HOM05D001969 ORTHO05D003463 2.3e-12 75.9 65 56.9
FAN14G4464 Fragaria x ananassa HOM05D001969 ORTHO05D003463 2.3e-12 75.9 65 56.9
PGR042G1344 Punica granatum HOM05D001969 ORTHO05D003463 2.3e-12 75.9 65 53.8
SalBow1G8609 Salvia bowleyana HOM05D001969 ORTHO05D003463 2.3e-12 75.9 65 53.8
SalBow7G0057 Salvia bowleyana HOM05D001969 ORTHO05D003463 2.3e-12 75.9 65 53.8
TWI18G1093 Tripterygium wilfordii HOM05D001969 ORTHO05D003463 3.0e-12 75.5 65 55.4
Peaxi162Scf00132g00081 Petunia axillaris HOM05D001969 ORTHO05D003463 5.2e-12 74.7 47 66.0
GSVIVG01030573001 Vitis vinifera HOM05D001969 ORTHO05D003463 5.2e-12 74.7 65 56.9
ClCG02G017400 Citrullus lanatus HOM05D001969 ORTHO05D003463 6.8e-12 74.3 65 50.8
Lj3g0021806 Lotus japonicus HOM05D001969 ORTHO05D003463 6.8e-12 74.3 65 55.4
Ca_01532_v3 Cicer arietinum L. HOM05D001969 ORTHO05D003463 8.8e-12 73.9 68 54.4
Ciclev10015950m.g Citrus clementina HOM05D001969 ORTHO05D003463 8.8e-12 73.9 65 55.4
PSO675G2972 Papaver somniferum HOM05D001969 ORTHO05D003463 1.2e-11 73.6 65 53.8
TPR.G27095 Trifolium pratense HOM05D001969 ORTHO05D003463 1.2e-11 73.6 68 52.9
Atru.chr6.3052 Acer truncatum HOM05D001969 ORTHO05D003463 1.5e-11 73.2 65 53.8
Medtr2g090070 Medicago truncatula HOM05D001969 ORTHO05D003463 1.5e-11 73.2 61 57.4
CsaV3_6G012530 Cucumis sativus L. HOM05D001969 ORTHO05D003463 2.0e-11 72.8 65 49.2
Os03g0582000 Oryza sativa ssp. japonica HOM05D001969 ORTHO05D003463 2.6e-11 72.4 65 49.2
Sed0018478 Sechium edule HOM05D001969 ORTHO05D003463 2.6e-11 72.4 65 50.8
Potri.013G145600 Populus trichocarpa HOM05D001969 ORTHO05D003463 3.4e-11 72.0 65 50.8
Potri.019G104700 Populus trichocarpa HOM05D001969 ORTHO05D003463 3.4e-11 72.0 65 53.8
Sabra13G0117300 Salix brachista HOM05D001969 ORTHO05D003463 3.4e-11 72.0 65 50.8
Migut.H01028 Erythranthe guttata HOM05D001969 ORTHO05D003463 7.5e-11 70.9 67 53.7
Cc05_g06480 Coffea canephora HOM05D001969 ORTHO05D003463 9.8e-11 70.5 123 39.0
Gohir.D02G182500 Gossypium hirsutum HOM05D001969 ORTHO05D003463 9.8e-11 70.5 65 52.3
CDE01G0485 Ceratophyllum demersum HOM05D001969 ORTHO05D003463 1.7e-10 69.7 65 49.2
TPR.G27124 Trifolium pratense HOM05D001969 ORTHO05D003463 1.7e-10 69.7 68 51.5
PSO541G0359 Papaver somniferum HOM05D001969 ORTHO05D003463 2.2e-10 69.3 65 50.8
Peaxi162Scf00132g00822 Petunia axillaris HOM05D001969 ORTHO05D003463 2.2e-10 69.3 116 41.4
Sed0014445 Sechium edule HOM05D001969 ORTHO05D003463 2.2e-10 69.3 65 49.2
PSO675G6940 Papaver somniferum HOM05D001969 ORTHO05D003463 2.8e-10 68.9 65 50.8
DCAR_009732 Daucus carota HOM05D001969 ORTHO05D003463 3.7e-10 68.6 65 49.2
Sc12g0002730 Simmondsia chinensis HOM05D001969 ORTHO05D003463 4.8e-10 68.2 65 49.2
Sc12g0003980 Simmondsia chinensis HOM05D001969 ORTHO05D003463 4.8e-10 68.2 65 49.2
Haze_13100 Corylus avellana HOM05D001969 ORTHO05D003463 8.3e-10 67.4 54 57.4
Psat5g270080 Pisum sativum HOM05D001969 ORTHO05D003463 1.1e-09 67.0 68 48.5
Zm00001eb219580 Zea mays HOM05D001969 ORTHO05D003463 1.4e-09 66.6 54 55.6
CDE12G0465 Ceratophyllum demersum HOM05D001969 ORTHO05D003463 1.8e-09 66.2 123 33.3
Thecc.02G173000 Theobroma cacao HOM05D001969 ORTHO05D003463 1.8e-09 66.2 65 47.7
QL10p048419 Quercus lobata HOM05D001969 ORTHO05D003463 2.4e-09 65.9 64 48.4
Rhsim04G0065900 Rhododendron simsii HOM05D001969 ORTHO05D003463 2.4e-09 65.9 64 50.0
Actinidia39674 Actinidia chinensis HOM05D001969 ORTHO05D003463 5.4e-09 64.7 64 48.4
Dinv23699 Davidia involucrata HOM05D001969 ORTHO05D003463 7.0e-09 64.3 64 45.3
CANSAT64G2152 Cannabis sativa HOM05D001969 ORTHO05D003463 9.1e-09 63.9 65 47.7
Haze_13099 Corylus avellana HOM05D001969 ORTHO05D003463 9.1e-09 63.9 64 46.9
DCAR_012986 Daucus carota HOM05D001969 ORTHO05D003463 1.6e-08 63.2 64 48.4
COL.COLO4_13691 Corchorus olitorius HOM05D001969 ORTHO05D003463 2.7e-08 62.4 64 46.9
MELO3C013524.2 Cucumis melo HOM05D001969 ORTHO05D003463 2.7e-08 62.4 64 43.8
Dinv15476 Davidia involucrata HOM05D001969 ORTHO05D003463 3.5e-08 62.0 64 43.8
Lj1C735T3 Lonicera japonica HOM05D001969 ORTHO05D003463 3.5e-08 62.0 63 46.0
vmacro09268 Vaccinium macrocarpon HOM05D001969 ORTHO05D003463 4.5e-08 61.6 64 45.3
CsaV3_6G012510 Cucumis sativus L. HOM05D001969 ORTHO05D003463 5.9e-08 61.2 64 43.8
Hma1.2p1_0213F.1_g090570 Hydrangea macrophylla HOM05D001969 ORTHO05D003463 5.9e-08 61.2 64 43.8
MD09G1092500 Malus domestica HOM05D001969 ORTHO05D003463 7.7e-08 60.8 64 42.2
CDE05G0969 Ceratophyllum demersum HOM05D001969 ORTHO05D003463 1.0e-07 60.5 64 43.8
Sed0010350 Sechium edule HOM05D001969 ORTHO05D003463 1.0e-07 60.5 64 43.8
PSO675G3871 Papaver somniferum HOM05D001969 ORTHO05D003463 1.3e-07 60.1 64 45.3
Ah.13g068530 Amaranthus hybridus HOM05D001969 ORTHO05D003463 1.7e-07 59.7 64 43.8
MBI02_g26441_MAGBIO Magnolia biondii HOM05D001969 ORTHO05D003463 1.7e-07 59.7 64 43.8
MBI02_g46699_MAGBIO Magnolia biondii HOM05D001969 ORTHO05D003463 1.7e-07 59.7 64 43.8
MBI02_g48137_MAGBIO Magnolia biondii HOM05D001969 ORTHO05D003463 1.7e-07 59.7 64 43.8
MD09G1092400 Malus domestica HOM05D001969 ORTHO05D003463 1.7e-07 59.7 65 52.3
Hund15989 Selenicereus undatus HOM05D001969 ORTHO05D003463 2.3e-07 59.3 64 43.8
Nitab4.5_0003018g0040 Nicotiana tabacum HOM05D001969 ORTHO05D003463 2.9e-07 58.9 36 69.4
Prupe.3G232600 Prunus persica HOM05D001969 ORTHO05D003463 3.8e-07 58.5 64 42.2
RcHm_v2.0_Chr2g0162051 Rosa chinensis HOM05D001969 ORTHO05D003463 3.8e-07 58.5 64 42.2
PGR142G0421 Punica granatum HOM05D001969 ORTHO05D003463 5.0e-07 58.2 63 44.4
Atru.chr6.3053 Acer truncatum HOM05D001969 ORTHO05D003463 8.6e-07 57.4 64 42.2
Eucgr.K00936 Eucalyptus grandis HOM05D001969 ORTHO05D003463 8.6e-07 57.4 64 40.6
Manes.13G150900 Manihot esculenta HOM05D001969 ORTHO05D003463 8.6e-07 57.4 64 43.8
CiPaw.04G123100 Carya illinoinensis HOM05D001969 ORTHO05D003463 1.1e-06 57.0 64 45.3
THA.LOC104814491 Tarenaya hassleriana HOM05D001969 ORTHO05D003463 1.1e-06 57.0 65 43.1
Nitab4.5_0013575g0010 Nicotiana tabacum HOM05D001969 ORTHO05D003463 1.5e-06 56.6 64 45.3
Sc06g0009180 Simmondsia chinensis HOM05D001969 ORTHO05D003463 1.5e-06 56.6 64 42.2
CANSAT78G0375 Cannabis sativa HOM05D001969 ORTHO05D003463 1.9e-06 56.2 64 43.8
FAN02G4205 Fragaria x ananassa HOM05D001969 ORTHO05D003463 1.9e-06 56.2 64 40.6
FAN05G0495 Fragaria x ananassa HOM05D001969 ORTHO05D003463 1.9e-06 56.2 64 40.6
CSS0050003 Camellia sinensis var. sinensis HOM05D001969 ORTHO05D003463 2.5e-06 55.8 64 43.8
FAN14G0313 Fragaria x ananassa HOM05D001969 ORTHO05D003463 2.5e-06 55.8 64 42.2
MD17G1082500 Malus domestica HOM05D001969 ORTHO05D003463 2.5e-06 55.8 65 41.5
TAR629G2902 Trochodendron aralioides HOM05D001969 ORTHO05D003463 2.5e-06 55.8 64 40.6
EL10Ac3g05654 Beta vulgaris HOM05D001969 ORTHO05D003463 3.3e-06 55.5 65 38.5
FvH4_6g44860 Fragaria vesca HOM05D001969 ORTHO05D003463 3.3e-06 55.5 64 40.6
Potri.013G145700 Populus trichocarpa HOM05D001969 ORTHO05D003463 3.3e-06 55.5 64 43.8
Ah.07g207250 Amaranthus hybridus HOM05D001969 ORTHO05D003463 4.2e-06 55.1 64 39.1
Ciclev10001997m.g Citrus clementina HOM05D001969 ORTHO05D003463 4.2e-06 55.1 64 39.1
Duzib132G0995 Durio zibethinus HOM05D001969 ORTHO05D003463 4.2e-06 55.1 64 39.1
Eucgr.K00933 Eucalyptus grandis HOM05D001969 ORTHO05D003463 4.2e-06 55.1 64 39.1
Sabra13G0117400 Salix brachista HOM05D001969 ORTHO05D003463 4.2e-06 55.1 64 43.8
SalBow1G1242 Salvia bowleyana HOM05D001969 ORTHO05D003463 4.2e-06 55.1 64 43.8
VMungo1080G0966 Vigna mungo HOM05D001969 ORTHO05D003463 4.2e-06 55.1 64 43.8
AT2G20830 Arabidopsis thaliana HOM05D001969 ORTHO05D003463 5.5e-06 54.7 65 44.6
BcaB08g34941 Brassica carinata HOM05D001969 ORTHO05D003463 5.5e-06 54.7 65 44.6
BcaC07g41194 Brassica carinata HOM05D001969 ORTHO05D003463 5.5e-06 54.7 65 44.6
A09p58710 Brassica napus HOM05D001969 ORTHO05D003463 5.5e-06 54.7 65 44.6
C08p42010 Brassica napus HOM05D001969 ORTHO05D003463 5.5e-06 54.7 65 44.6
BolC8t51763H Brassica oleracea HOM05D001969 ORTHO05D003463 5.5e-06 54.7 65 44.6
BraA09t41257Z Brassica rapa HOM05D001969 ORTHO05D003463 5.5e-06 54.7 65 44.6
Ca_01533_v3 Cicer arietinum L. HOM05D001969 ORTHO05D003463 7.2e-06 54.3 64 43.8
FAN09G0082 Fragaria x ananassa HOM05D001969 ORTHO05D003463 7.2e-06 54.3 64 40.6
AL3G54000 Arabidopsis lyrata HOM05D001969 ORTHO05D003463 9.5e-06 53.9 65 43.1
Cc05_g06470 Coffea canephora HOM05D001969 ORTHO05D003463 9.5e-06 53.9 64 39.1
Glyma.12G201700 Glycine max HOM05D001969 ORTHO05D003463 9.5e-06 53.9 64 43.8
Glyma.13G300500 Glycine max HOM05D001969 ORTHO05D003463 9.5e-06 53.9 64 43.8
Gohir.D02G182600 Gossypium hirsutum HOM05D001969 ORTHO05D003463 9.5e-06 53.9 63 38.1
Gorai.005G205100 Gossypium raimondii HOM05D001969 ORTHO05D003463 9.5e-06 53.9 63 38.1
Nn1g06729 Nelumbo nucifera HOM05D001969 ORTHO05D003463 9.5e-06 53.9 64 40.6
Peaxi162Scf00132g00731 Petunia axillaris HOM05D001969 ORTHO05D003463 9.5e-06 53.9 64 42.2


User provided reference genes

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