Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0007617g0010 Nicotiana tabacum HOM05D004692 ORTHO05D006291 9.4e-236 819.7 383 100.0
CAN.G471.4 Capsicum annuum HOM05D004692 ORTHO05D006291 1.3e-208 729.6 382 89.0
Peaxi162Scf00119g00017 Petunia axillaris HOM05D004692 ORTHO05D006291 9.2e-207 723.4 383 88.8
PGSC0003DMG400000653 Solanum tuberosum HOM05D004692 ORTHO05D006291 1.2e-206 723.0 382 89.0
Sopen12g019180 Solanum pennellii HOM05D004692 ORTHO05D006291 1.9e-204 715.7 382 87.2
Solyc12g038970.3 Solanum lycopersicum HOM05D004692 ORTHO05D006291 2.5e-204 715.3 382 87.4
Nitab4.5_0000208g0050 Nicotiana tabacum HOM05D004692 ORTHO05D006291 6.6e-197 690.6 416 81.2
Dinv36841 Davidia involucrata HOM05D004692 ORTHO05D006291 2.2e-192 675.6 379 81.0
Hma1.2p1_0744F.1_g211680 Hydrangea macrophylla HOM05D004692 ORTHO05D006291 4.6e-190 667.9 383 78.6
CiPaw.15G118000 Carya illinoinensis HOM05D004692 ORTHO05D006291 1.5e-188 662.9 379 79.9
Migut.J01255 Erythranthe guttata HOM05D004692 ORTHO05D006291 2.8e-187 658.7 384 79.2
vmacro17655 Vaccinium macrocarpon HOM05D004692 ORTHO05D006291 4.7e-187 657.9 379 78.1
EL10Ac5g11213 Beta vulgaris HOM05D004692 ORTHO05D006291 6.2e-187 657.5 379 78.9
AUR62036914 Chenopodium quinoa HOM05D004692 ORTHO05D006291 8.1e-187 657.1 379 78.9
Ciclev10020592m.g Citrus clementina HOM05D004692 ORTHO05D006291 1.8e-186 656.0 382 79.3
Prupe.5G211900 Prunus persica HOM05D004692 ORTHO05D006291 2.3e-186 655.6 383 79.1
AUR62032158 Chenopodium quinoa HOM05D004692 ORTHO05D006291 4.0e-186 654.8 380 78.4
Rhsim08G0150000 Rhododendron simsii HOM05D004692 ORTHO05D006291 5.2e-186 654.4 379 78.6
RcHm_v2.0_Chr7g0184081 Rosa chinensis HOM05D004692 ORTHO05D006291 5.2e-186 654.4 381 79.8
TWI81G0688 Tripterygium wilfordii HOM05D004692 ORTHO05D006291 1.2e-185 653.3 382 77.7
QL10p021836 Quercus lobata HOM05D004692 ORTHO05D006291 2.0e-185 652.5 382 77.7
Lj5A139T82 Lonicera japonica HOM05D004692 ORTHO05D006291 2.6e-185 652.1 383 77.5
Cc04_g07930 Coffea canephora HOM05D004692 ORTHO05D006291 5.8e-185 651.0 385 78.7
QL10p021731 Quercus lobata HOM05D004692 ORTHO05D006291 7.6e-185 650.6 382 78.3
FAN13G2141 Fragaria x ananassa HOM05D004692 ORTHO05D006291 2.2e-184 649.0 382 79.8
Ah.11g047310 Amaranthus hybridus HOM05D004692 ORTHO05D006291 1.9e-183 646.0 379 78.9
Oeu058039.1 Olea europaea HOM05D004692 ORTHO05D006291 4.1e-183 644.8 379 77.0
MD14G1218000 Malus domestica HOM05D004692 ORTHO05D006291 7.1e-183 644.0 380 77.4
DCAR_015116 Daucus carota HOM05D004692 ORTHO05D006291 9.2e-183 643.7 383 75.7
CsaV3_1G003170 Cucumis sativus L. HOM05D004692 ORTHO05D006291 1.6e-182 642.9 379 77.6
Manes.01G023900 Manihot esculenta HOM05D004692 ORTHO05D006291 1.6e-182 642.9 382 76.7
Lalb_Chr13g0302611 Lupinus albus HOM05D004692 ORTHO05D006291 2.1e-182 642.5 373 76.9
FvH4_5g13050 Fragaria vesca HOM05D004692 ORTHO05D006291 2.7e-182 642.1 382 78.5
FAN18G3467 Fragaria x ananassa HOM05D004692 ORTHO05D006291 3.5e-182 641.7 382 78.5
MD06G1207500 Malus domestica HOM05D004692 ORTHO05D006291 3.5e-182 641.7 383 76.5
PSO017G3616 Papaver somniferum HOM05D004692 ORTHO05D006291 1.0e-181 640.2 379 76.8
Hund09975 Selenicereus undatus HOM05D004692 ORTHO05D006291 1.0e-181 640.2 379 76.3
CSS0001909 Camellia sinensis var. sinensis HOM05D004692 ORTHO05D006291 1.3e-181 639.8 379 75.5
MELO3C017264.2 Cucumis melo HOM05D004692 ORTHO05D006291 1.3e-181 639.8 379 77.3
GSVIVG01008185001 Vitis vinifera HOM05D004692 ORTHO05D006291 1.3e-181 639.8 379 77.6
Actinidia01418 Actinidia chinensis HOM05D004692 ORTHO05D006291 1.7e-181 639.4 389 76.1
Potri.015G055300 Populus trichocarpa HOM05D004692 ORTHO05D006291 1.7e-181 639.4 373 77.5
CSS0041638 Camellia sinensis var. sinensis HOM05D004692 ORTHO05D006291 2.3e-181 639.0 379 75.5
Ah.02g120970 Amaranthus hybridus HOM05D004692 ORTHO05D006291 3.0e-181 638.6 379 78.1
HanXRQChr16g0501991 Helianthus annuus HOM05D004692 ORTHO05D006291 3.9e-181 638.3 378 77.0
Lsat_1_v5_gn_4_112840 Lactuca sativa HOM05D004692 ORTHO05D006291 6.6e-181 637.5 379 75.7
Sed0023319 Sechium edule HOM05D004692 ORTHO05D006291 8.6e-181 637.1 382 76.2
THA.LOC104819389 Tarenaya hassleriana HOM05D004692 ORTHO05D006291 1.1e-180 636.7 382 75.4
DCAR_015115 Daucus carota HOM05D004692 ORTHO05D006291 1.5e-180 636.3 383 74.7
Phvul.003G180900 Phaseolus vulgaris HOM05D004692 ORTHO05D006291 3.3e-180 635.2 380 75.5
MSTRG.22946 Avicennia marina HOM05D004692 ORTHO05D006291 4.3e-180 634.8 383 74.4
PSO478G1466 Papaver somniferum HOM05D004692 ORTHO05D006291 2.1e-179 632.5 379 75.7
CANSAT80G0730 Cannabis sativa HOM05D004692 ORTHO05D006291 2.8e-179 632.1 382 74.1
Aqoxy3G00609 Aquilegia oxysepala HOM05D004692 ORTHO05D006291 3.6e-179 631.7 382 75.9
Atru.chr9.678 Acer truncatum HOM05D004692 ORTHO05D006291 4.7e-179 631.3 382 76.7
Glyma.17G083400 Glycine max HOM05D004692 ORTHO05D006291 1.1e-178 630.2 380 75.3
ECA232G0381 Erigeron canadensis HOM05D004692 ORTHO05D006291 2.4e-178 629.0 377 75.9
Gohir.A07G057600 Gossypium hirsutum HOM05D004692 ORTHO05D006291 3.1e-178 628.6 379 74.9
Nn4g23609 Nelumbo nucifera HOM05D004692 ORTHO05D006291 4.0e-178 628.2 380 76.3
Gohir.D07G062400 Gossypium hirsutum HOM05D004692 ORTHO05D006291 8.9e-178 627.1 379 74.9
TPR.G2028 Trifolium pratense HOM05D004692 ORTHO05D006291 1.2e-177 626.7 379 74.1
ClCG06G015290 Citrullus lanatus HOM05D004692 ORTHO05D006291 1.5e-177 626.3 379 76.0
Hund09942 Selenicereus undatus HOM05D004692 ORTHO05D006291 1.5e-177 626.3 397 72.5
Medtr4g112810 Medicago truncatula HOM05D004692 ORTHO05D006291 2.2e-176 622.5 379 73.6
Gorai.001G065900 Gossypium raimondii HOM05D004692 ORTHO05D006291 2.9e-176 622.1 380 74.7
Ca_21742_v3 Cicer arietinum L. HOM05D004692 ORTHO05D006291 3.8e-176 621.7 379 74.1
arahy.Tifrunner.gnm1.ann1.51KNRK Arachis hypogaea HOM05D004692 ORTHO05D006291 6.4e-176 620.9 379 74.4
A10p28500 Brassica napus HOM05D004692 ORTHO05D006291 5.4e-175 617.8 381 72.4
Psat4g044040 Pisum sativum HOM05D004692 ORTHO05D006291 1.6e-174 616.3 379 73.4
arahy.Tifrunner.gnm1.ann1.F96WR3 Arachis hypogaea HOM05D004692 ORTHO05D006291 7.8e-174 614.0 380 73.9
arahy.Tifrunner.gnm1.ann1.6286TX Arachis hypogaea HOM05D004692 ORTHO05D006291 1.0e-173 613.6 389 73.8
Sc12g0006990 Simmondsia chinensis HOM05D004692 ORTHO05D006291 1.0e-173 613.6 382 71.7
Thhalv10013807m.g Eutrema salsugineum HOM05D004692 ORTHO05D006291 1.3e-173 613.2 381 71.9
SGA_v2.0_scaffold56G20037 Striga asiatica HOM05D004692 ORTHO05D006291 1.3e-173 613.2 365 76.7
Lj4g0008523 Lotus japonicus HOM05D004692 ORTHO05D006291 1.7e-173 612.8 378 73.5
Aa31LG3G18370 Aethionema arabicum HOM05D004692 ORTHO05D006291 2.3e-173 612.5 411 69.3
C03p04140 Brassica napus HOM05D004692 ORTHO05D006291 2.3e-173 612.5 376 73.1
C09p68780 Brassica napus HOM05D004692 ORTHO05D006291 5.1e-173 611.3 382 73.0
SalBow5G2075 Salvia bowleyana HOM05D004692 ORTHO05D006291 8.7e-173 610.5 394 73.4
BcaB08g37277 Brassica carinata HOM05D004692 ORTHO05D006291 1.1e-172 610.1 382 72.5
AT5G08170 Arabidopsis thaliana HOM05D004692 ORTHO05D006291 1.5e-172 609.8 381 72.7
BolC3t12946H Brassica oleracea HOM05D004692 ORTHO05D006291 1.9e-172 609.4 377 73.2
BraA03t09714Z Brassica rapa HOM05D004692 ORTHO05D006291 3.3e-172 608.6 377 73.2
PGR083G2684 Punica granatum HOM05D004692 ORTHO05D006291 3.3e-172 608.6 382 73.3
Sp6g34780 Schrenkiella parvula HOM05D004692 ORTHO05D006291 3.3e-172 608.6 377 72.9
AL6G18560 Arabidopsis lyrata HOM05D004692 ORTHO05D006291 9.6e-172 607.1 381 72.4
VMungo1215G1525 Vigna mungo HOM05D004692 ORTHO05D006291 9.6e-172 607.1 380 73.2
A03p03660 Brassica napus HOM05D004692 ORTHO05D006291 1.3e-171 606.7 377 72.9
Carub.0006s0707 Capsella rubella HOM05D004692 ORTHO05D006291 1.3e-171 606.7 380 71.8
MBI14_g16236_MAGBIO Magnolia biondii HOM05D004692 ORTHO05D006291 2.8e-171 605.5 379 73.9
ATR0691G179 Amborella trichopoda HOM05D004692 ORTHO05D006291 4.8e-171 604.7 382 72.3
FAN08G1512 Fragaria x ananassa HOM05D004692 ORTHO05D006291 1.1e-170 603.6 357 78.7
BcaNung05091 Brassica carinata HOM05D004692 ORTHO05D006291 2.4e-170 602.4 378 72.5
CDE06G1750 Ceratophyllum demersum HOM05D004692 ORTHO05D006291 5.3e-170 601.3 378 72.5
arahy.Tifrunner.gnm1.ann1.RJWR3V Arachis hypogaea HOM05D004692 ORTHO05D006291 1.3e-168 596.7 379 72.6
Eucgr.B00659 Eucalyptus grandis HOM05D004692 ORTHO05D006291 3.8e-168 595.1 377 71.9
Actinidia10430 Actinidia chinensis HOM05D004692 ORTHO05D006291 7.1e-167 590.9 386 72.3
CDE07G1308 Ceratophyllum demersum HOM05D004692 ORTHO05D006291 1.1e-164 583.6 382 69.9
Duzib205G0043 Durio zibethinus HOM05D004692 ORTHO05D006291 1.1e-164 583.6 383 71.5
BraA10t44898Z Brassica rapa HOM05D004692 ORTHO05D006291 1.6e-163 579.7 381 69.0
BolC9t59625H Brassica oleracea HOM05D004692 ORTHO05D006291 2.8e-163 578.9 382 70.2
Sabra15G0080100 Salix brachista HOM05D004692 ORTHO05D006291 6.2e-163 577.8 465 60.4
Thecc.03G112800 Theobroma cacao HOM05D004692 ORTHO05D006291 6.2e-163 577.8 379 71.2
SHI18993 Sapria himalayana HOM05D004692 ORTHO05D006291 1.4e-162 576.6 402 67.4
HanXRQChr16g0501981 Helianthus annuus HOM05D004692 ORTHO05D006291 1.8e-162 576.2 430 64.7
TAR374G0590 Trochodendron aralioides HOM05D004692 ORTHO05D006291 2.2e-160 569.3 336 76.2
HPP92_019130 Vanilla planifolia HOM05D004692 ORTHO05D006291 3.8e-160 568.5 381 68.2
unitig_26.g9673 Utricularia gibba HOM05D004692 ORTHO05D006291 1.1e-154 550.4 383 65.8
BcaB01g05624 Brassica carinata HOM05D004692 ORTHO05D006291 2.4e-154 549.3 377 68.4
Os04g0466600 Oryza sativa ssp. japonica HOM05D004692 ORTHO05D006291 2.6e-153 545.8 382 64.7
HPP92_019140 Vanilla planifolia HOM05D004692 ORTHO05D006291 2.9e-152 542.3 369 67.5
Haze_18550 Corylus avellana HOM05D004692 ORTHO05D006291 3.2e-151 538.9 308 79.9
Pp3c14_21790 Physcomitrium patens HOM05D004692 ORTHO05D006291 1.9e-148 529.6 377 63.7
Mapoly0016s0188 Marchantia polymorpha HOM05D004692 ORTHO05D006291 7.4e-148 527.7 382 63.4
SMO115G0272 Selaginella moellendorffii HOM05D004692 ORTHO05D006291 7.4e-148 527.7 376 64.4
AagrBONN_evm.TU.Sc2ySwM_117.2364 Anthoceros agrestis HOM05D004692 ORTHO05D006291 1.5e-145 520.0 380 62.9
Zm00001eb424480 Zea mays HOM05D004692 ORTHO05D006291 3.7e-139 498.8 425 57.9
Ca_25716_v3 Cicer arietinum L. HOM05D004692 ORTHO05D006291 2.2e-136 489.6 301 72.1
CBR_g22406 Chara braunii HOM05D004692 ORTHO05D006291 4.8e-131 471.9 392 58.4
arahy.Tifrunner.gnm1.ann1.U185V9 Arachis hypogaea HOM05D004692 ORTHO05D006291 1.1e-130 470.7 380 62.1
CARHR205010 Cardamine hirsuta HOM05D004692 ORTHO05D006291 4.5e-129 465.3 277 76.2
Cfa019856 Carpinus fangiana HOM05D004692 ORTHO05D006291 1.8e-114 416.8 348 59.5
Medtr4g110140 Medicago truncatula HOM05D004692 ORTHO05D006291 4.2e-111 405.6 393 51.9
Sc12g0006960 Simmondsia chinensis HOM05D004692 ORTHO05D006291 2.3e-101 373.2 217 77.4
CSS0018290 Camellia sinensis var. sinensis HOM05D004692 ORTHO05D006291 1.8e-98 363.6 222 73.4
CSS0041488 Camellia sinensis var. sinensis HOM05D004692 ORTHO05D006291 4.1e-98 362.5 250 66.0
CSS0026593 Camellia sinensis var. sinensis HOM05D004692 ORTHO05D006291 6.1e-94 348.6 231 68.4
Pp3c13_22750 Physcomitrium patens HOM05D004692 ORTHO05D006291 1.2e-92 344.4 390 45.6
Cre01.g009350 Chlamydomonas reinhardtii HOM05D004692 ORTHO05D006291 1.7e-91 340.5 389 46.0
Hund10163 Selenicereus undatus HOM05D004692 ORTHO05D006291 5.9e-89 332.0 379 45.9
PRCOL_00005028 Prasinoderma coloniale HOM05D004692 ORTHO05D006291 7.5e-84 315.1 407 43.2
CSS0021853 Camellia sinensis var. sinensis HOM05D004692 ORTHO05D006291 3.9e-80 302.8 196 68.9
CSS0048768 Camellia sinensis var. sinensis HOM05D004692 ORTHO05D006291 6.8e-77 292.0 165 76.4
Cpa.g.c37454 Carica papaya HOM05D004692 ORTHO05D006291 1.0e-72 278.1 178 71.9
Lsat_1_v5_gn_5_119361 Lactuca sativa HOM05D004692 ORTHO05D006291 2.8e-62 243.4 171 66.7
Cre01.g053300 Chlamydomonas reinhardtii HOM05D004692 ORTHO05D006291 4.0e-45 186.4 484 28.7
Cpa.g.c37318 Carica papaya HOM05D004692 ORTHO05D006291 2.4e-42 177.2 94 80.9
FAN04G1239 Fragaria x ananassa HOM05D004692 ORTHO05D006291 1.1e-34 151.8 129 63.6
Ca_29974_v3 Cicer arietinum L. HOM05D000837 ORTHO05D008386 4.6e-33 146.4 82 82.9
C05p13090 Brassica napus HOM05D004692 ORTHO05D006291 5.1e-32 142.9 106 64.2
BcaC05g25434 Brassica carinata HOM05D004692 ORTHO05D006291 1.5e-31 141.4 106 63.2
CDE06G1955 Ceratophyllum demersum HOM05D004692 ORTHO05D019764 7.9e-25 119.0 340 28.2
Lsat_1_v5_gn_3_89601 Lactuca sativa HOM05D004692 ORTHO05D006291 1.3e-24 118.2 92 59.8
RcHm_v2.0_Chr2g0128461 Rosa chinensis HOM05D004692 ORTHO05D019764 1.9e-18 97.8 163 36.2
RcHm_v2.0_Chr2g0129061 Rosa chinensis HOM05D004692 ORTHO05D006291 3.0e-16 90.5 43 93.0
RcHm_v2.0_Chr4g0407261 Rosa chinensis HOM05D004692 ORTHO05D019764 8.8e-16 89.0 157 35.7
SGA_v2.0_scaffold26G11385 Striga asiatica HOM05D004692 ORTHO05D019764 7.4e-15 85.9 47 83.0
arahy.Tifrunner.gnm1.ann1.5N8491 Arachis hypogaea HOM05D004692 ORTHO05D019764 1.1e-13 82.0 46 78.3
RcHm_v2.0_Chr2g0164691 Rosa chinensis HOM05D004692 ORTHO05D019764 1.2e-12 78.6 40 82.5
Haze_18551 Corylus avellana HOM05D016865 ORTHO05D022463 4.4e-07 60.1 29 72.4
BraA01t02993Z Brassica rapa HOM05D004692 ORTHO05D006291 3.7e-06 57.0 32 75.0
BraA09t36800Z Brassica rapa HOM05D004692 ORTHO05D006291 3.7e-06 57.0 32 75.0
Cpa.g.c45305 Carica papaya HOM05D004692 ORTHO05D006291 3.7e-06 57.0 29 72.4
RcHm_v2.0_Chr4g0407271 Rosa chinensis HOM05D004692 ORTHO05D342244 3.7e-06 57.0 28 85.7


User provided reference genes

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