Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0007580g0010 Nicotiana tabacum HOM05D004110 ORTHO05D004810 0.0e+00 4244.9 2175 100.0
Sopen11g016530 Solanum pennellii HOM05D004110 ORTHO05D004810 0.0e+00 3108.5 2192 75.0
Solyc11g039880.2 Solanum lycopersicum HOM05D004110 ORTHO05D004810 0.0e+00 2883.2 2019 75.3
Peaxi162Scf00684g00023 Petunia axillaris HOM05D004110 ORTHO05D004810 0.0e+00 2424.0 2143 64.2
Dinv04965 Davidia involucrata HOM05D004110 ORTHO05D004810 0.0e+00 2193.3 2191 55.9
Actinidia29167 Actinidia chinensis HOM05D004110 ORTHO05D004810 0.0e+00 2114.0 2195 52.9
Cc02_g16480 Coffea canephora HOM05D004110 ORTHO05D004810 0.0e+00 2052.3 2224 51.6
MSTRG.20018 Avicennia marina HOM05D004110 ORTHO05D004810 0.0e+00 2048.1 2182 51.2
Nitab4.5_0006590g0010 Nicotiana tabacum HOM05D004110 ORTHO05D004810 0.0e+00 2033.8 1134 92.1
Rhsim05G0062900 Rhododendron simsii HOM05D004110 ORTHO05D004810 0.0e+00 2018.4 2217 51.4
Migut.B00121 Erythranthe guttata HOM05D004110 ORTHO05D004810 0.0e+00 1967.2 2190 50.0
Lj5C184G3 Lonicera japonica HOM05D004110 ORTHO05D004810 0.0e+00 1962.6 2216 51.2
Cfa005187 Carpinus fangiana HOM05D004110 ORTHO05D004810 0.0e+00 1939.5 2177 49.6
QL11p047649 Quercus lobata HOM05D004110 ORTHO05D004810 0.0e+00 1934.8 2241 48.8
Thecc.02G066600 Theobroma cacao HOM05D004110 ORTHO05D004810 0.0e+00 1932.5 2183 49.5
GSVIVG01024075001 Vitis vinifera HOM05D004110 ORTHO05D004810 0.0e+00 1931.0 2206 49.3
CiPaw.06G125000 Carya illinoinensis HOM05D004110 ORTHO05D004810 0.0e+00 1930.6 2177 49.3
Prupe.8G161000 Prunus persica HOM05D004110 ORTHO05D004810 0.0e+00 1911.0 2186 49.1
MD05G1116500 Malus domestica HOM05D004110 ORTHO05D004810 0.0e+00 1903.3 2182 48.9
TAR376G1212 Trochodendron aralioides HOM05D004110 ORTHO05D004810 0.0e+00 1902.9 2207 49.2
Gorai.008G034000 Gossypium raimondii HOM05D004110 ORTHO05D004810 0.0e+00 1897.9 2182 48.6
Manes.04G077900 Manihot esculenta HOM05D004110 ORTHO05D004810 0.0e+00 1897.5 2180 48.2
Potri.009G130000 Populus trichocarpa HOM05D004110 ORTHO05D004810 0.0e+00 1893.2 2174 48.2
DCAR_022780 Daucus carota HOM05D004110 ORTHO05D004810 0.0e+00 1884.0 2182 48.3
CANSAT25G3021 Cannabis sativa HOM05D004110 ORTHO05D004810 0.0e+00 1870.9 2184 47.8
Ciclev10027667m.g Citrus clementina HOM05D004110 ORTHO05D004810 0.0e+00 1860.5 2176 48.6
Gohir.D12G033200 Gossypium hirsutum HOM05D004110 ORTHO05D004810 0.0e+00 1859.7 2171 48.0
RcHm_v2.0_Chr6g0245151 Rosa chinensis HOM05D004110 ORTHO05D004810 0.0e+00 1858.2 2186 48.7
Sabra09G0099400 Salix brachista HOM05D004110 ORTHO05D004810 0.0e+00 1837.0 2217 47.1
CAN.G603.1 Capsicum annuum HOM05D004110 ORTHO05D004810 0.0e+00 1827.0 1323 73.5
FvH4_2g01950 Fragaria vesca HOM05D004110 ORTHO05D004810 0.0e+00 1819.7 2183 47.4
FAN20G3101 Fragaria x ananassa HOM05D004110 ORTHO05D004810 0.0e+00 1818.9 2183 47.3
FAN15G2714 Fragaria x ananassa HOM05D004110 ORTHO05D004810 0.0e+00 1816.6 2182 47.2
SGA_v2.0_scaffold58G20427 Striga asiatica HOM05D004110 ORTHO05D004810 0.0e+00 1812.3 2178 47.3
TWI79G0689 Tripterygium wilfordii HOM05D004110 ORTHO05D004810 0.0e+00 1799.6 2179 46.7
Psat7g138160 Pisum sativum HOM05D004110 ORTHO05D004810 0.0e+00 1785.8 2176 46.5
Glyma.12G024600 Glycine max HOM05D004110 ORTHO05D004810 0.0e+00 1779.2 2187 47.0
Ca_30033_v3 Cicer arietinum L. HOM05D004110 ORTHO05D004810 0.0e+00 1770.7 2246 45.6
Medtr4g075330 Medicago truncatula HOM05D004110 ORTHO05D004810 0.0e+00 1765.7 2173 46.5
Lalb_Chr01g0001341 Lupinus albus HOM05D004110 ORTHO05D004810 0.0e+00 1760.7 2179 46.2
PGR142G1237 Punica granatum HOM05D004110 ORTHO05D004810 0.0e+00 1752.3 2190 45.7
FAN24G2945 Fragaria x ananassa HOM05D004110 ORTHO05D004810 0.0e+00 1748.8 2381 43.6
Phvul.011G026800 Phaseolus vulgaris HOM05D004110 ORTHO05D004810 0.0e+00 1748.8 2186 46.0
ECA234G0434 Erigeron canadensis HOM05D004110 ORTHO05D004810 0.0e+00 1742.2 2170 46.4
Lj3g0009405 Lotus japonicus HOM05D004110 ORTHO05D004810 0.0e+00 1740.3 2182 46.2
PSO541G0713 Papaver somniferum HOM05D004110 ORTHO05D004810 0.0e+00 1739.9 2195 45.0
HanXRQChr10g0299011 Helianthus annuus HOM05D004110 ORTHO05D004810 0.0e+00 1738.0 2171 46.8
Ca_19005_v3 Cicer arietinum L. HOM05D004110 ORTHO05D004810 0.0e+00 1736.5 2203 45.6
PSO675G3689 Papaver somniferum HOM05D004110 ORTHO05D004810 0.0e+00 1735.3 2196 45.0
arahy.Tifrunner.gnm1.ann1.6KB8MN Arachis hypogaea HOM05D004110 ORTHO05D004810 0.0e+00 1726.8 2176 45.5
Gohir.A12G039200 Gossypium hirsutum HOM05D004110 ORTHO05D004810 0.0e+00 1715.7 1979 48.4
THA.LOC104824773 Tarenaya hassleriana HOM05D004110 ORTHO05D004810 0.0e+00 1707.6 2173 45.0
arahy.Tifrunner.gnm1.ann1.5454UR Arachis hypogaea HOM05D004110 ORTHO05D004810 0.0e+00 1693.7 2176 44.8
CsaV3_2G015750 Cucumis sativus L. HOM05D004110 ORTHO05D004810 0.0e+00 1673.3 2181 44.2
Sed0006799 Sechium edule HOM05D004110 ORTHO05D004810 0.0e+00 1664.8 2189 44.0
Aqoxy2G01068 Aquilegia oxysepala HOM05D004110 ORTHO05D004810 0.0e+00 1659.0 2215 44.2
AL7G10630 Arabidopsis lyrata HOM05D004110 ORTHO05D004810 0.0e+00 1656.3 2169 43.8
Lsat_1_v5_gn_4_74700 Lactuca sativa HOM05D004110 ORTHO05D004810 0.0e+00 1654.4 2162 45.5
EL10Ac9g21435 Beta vulgaris HOM05D004110 ORTHO05D004810 0.0e+00 1652.5 2287 43.2
AT4G38760 Arabidopsis thaliana HOM05D004110 ORTHO05D004810 0.0e+00 1652.1 2170 43.2
Thhalv10024188m.g Eutrema salsugineum HOM05D004110 ORTHO05D004810 0.0e+00 1649.8 2171 44.0
Carub.0007s0061 Capsella rubella HOM05D004110 ORTHO05D004810 0.0e+00 1644.0 2162 43.4
Sc18g0006650 Simmondsia chinensis HOM05D004110 ORTHO05D004810 0.0e+00 1638.6 2194 43.9
MBI05_g07505_MAGBIO Magnolia biondii HOM05D004110 ORTHO05D004810 0.0e+00 1632.1 2224 43.4
Sp7g37050 Schrenkiella parvula HOM05D004110 ORTHO05D004810 0.0e+00 1631.7 2164 43.1
BolC7t46773H Brassica oleracea HOM05D004110 ORTHO05D004810 0.0e+00 1620.1 2175 43.1
C07p63600 Brassica napus HOM05D004110 ORTHO05D004810 0.0e+00 1619.4 2172 43.1
BraA06t27759Z Brassica rapa HOM05D004110 ORTHO05D004810 0.0e+00 1617.1 2177 43.0
A06p48910 Brassica napus HOM05D004110 ORTHO05D004810 0.0e+00 1615.1 2174 43.1
Hund00042 Selenicereus undatus HOM05D004110 ORTHO05D004810 0.0e+00 1602.4 2121 43.5
Ah.01g022610 Amaranthus hybridus HOM05D004110 ORTHO05D004810 0.0e+00 1602.0 2195 42.6
AUR62013086 Chenopodium quinoa HOM05D004110 ORTHO05D004810 0.0e+00 1597.8 2227 43.1
TPR.G17192 Trifolium pratense HOM05D004110 ORTHO05D004810 0.0e+00 1591.2 2173 43.3
Aa31LG6G16440 Aethionema arabicum HOM05D004110 ORTHO05D004810 0.0e+00 1577.0 2208 41.9
Eucgr.I01378 Eucalyptus grandis HOM05D004110 ORTHO05D004810 0.0e+00 1478.8 1938 44.7
Nn5g29099 Nelumbo nucifera HOM05D004110 ORTHO05D004810 0.0e+00 1466.8 2187 41.0
BcaNung01969 Brassica carinata HOM05D004110 ORTHO05D004810 0.0e+00 1462.2 2173 40.6
Nitab4.5_0006590g0020 Nicotiana tabacum HOM05D004110 ORTHO05D004810 0.0e+00 1399.4 863 86.3
Oeu014463.1 Olea europaea HOM05D004110 ORTHO05D004810 0.0e+00 1354.0 2517 37.8
ATR0810G267 Amborella trichopoda HOM05D004110 ORTHO05D004810 0.0e+00 1352.4 2203 38.8
vmacro17377 Vaccinium macrocarpon HOM05D004110 ORTHO05D004810 0.0e+00 1292.3 1517 49.3
CSS0024884 Camellia sinensis var. sinensis HOM05D004110 ORTHO05D004810 0.0e+00 1261.5 1368 52.3
Duzib248G0147 Durio zibethinus HOM05D004110 ORTHO05D004810 0.0e+00 1237.2 1502 46.7
Cpa.g.sc37.187 Carica papaya HOM05D004110 ORTHO05D004810 0.0e+00 1173.7 1692 42.4
unitig_21.g20818 Utricularia gibba HOM05D004110 ORTHO05D004810 0.0e+00 1162.1 2197 35.8
Haze_02193 Corylus avellana HOM05D004110 ORTHO05D004810 0.0e+00 1094.7 1498 43.7
AUR62010090 Chenopodium quinoa HOM05D004110 ORTHO05D004810 1.5e-274 951.0 1345 42.9
CAN.G603.2 Capsicum annuum HOM05D004110 ORTHO05D004810 2.9e-249 867.1 742 65.2
Pp3c5_12360 Physcomitrium patens HOM05D004110 ORTHO05D004810 5.1e-246 856.3 2279 28.4
Mapoly0001s0208 Marchantia polymorpha HOM05D004110 ORTHO05D004810 1.6e-239 834.7 2286 28.1
AagrBONN_evm.TU.Sc2ySwM_344.4164 Anthoceros agrestis HOM05D004110 ORTHO05D004810 5.0e-225 786.6 2253 27.5
MELO3C020789.2 Cucumis melo HOM05D004110 ORTHO05D004810 4.1e-219 766.9 1067 41.0
vmacro17378 Vaccinium macrocarpon HOM05D004110 ORTHO05D004810 1.1e-211 742.3 706 55.1
MD10G1119400 Malus domestica HOM05D004110 ORTHO05D004810 2.9e-204 717.6 786 50.9
Haze_02194 Corylus avellana HOM05D004110 ORTHO05D004810 1.4e-198 698.7 734 52.0
ClCG02G011600 Citrullus lanatus HOM05D004110 ORTHO05D004810 2.4e-179 634.8 778 44.7
CARHR294450 Cardamine hirsuta HOM05D004110 ORTHO05D004810 4.8e-175 620.5 769 44.2
Zm00001eb026650 Zea mays HOM05D004110 ORTHO05D004810 2.2e-172 611.7 1449 32.0
SEGI_22139 Sequoiadendron giganteum HOM05D004110 ORTHO05D004810 2.2e-164 585.1 1634 28.2
Cpa.g.sc37.188 Carica papaya HOM05D004110 ORTHO05D004810 8.4e-164 583.2 487 60.6
HPP92_005008 Vanilla planifolia HOM05D004110 ORTHO05D004810 5.1e-161 573.9 951 37.4
Potri.004G168700 Populus trichocarpa HOM05D004110 ORTHO05D004810 4.8e-143 514.2 793 42.0
CDE05G0764 Ceratophyllum demersum HOM05D004110 ORTHO05D004810 3.8e-140 504.6 803 37.1
FAN27G1057 Fragaria x ananassa HOM05D004110 ORTHO05D004810 1.1e-131 476.5 540 49.8
CBR_g5647 Chara braunii HOM05D004110 ORTHO05D004810 1.5e-120 439.5 2313 22.6
COL.COLO4_17262 Corchorus olitorius HOM05D004110 ORTHO05D004810 1.1e-115 423.3 770 35.3
Glyma.11G098551 Glycine max HOM05D004110 ORTHO05D004810 3.6e-114 418.3 339 59.6
SHI05691 Sapria himalayana HOM05D004110 ORTHO05D004810 2.5e-107 395.6 513 43.5
Glyma.11G098600 Glycine max HOM05D004110 ORTHO05D004810 2.7e-106 392.1 417 53.0
MD10G1119600 Malus domestica HOM05D004110 ORTHO05D004810 1.2e-101 376.7 391 50.6
SEGI_22669 Sequoiadendron giganteum HOM05D004110 ORTHO05D004810 7.7e-101 374.0 743 33.5
SHI05701 Sapria himalayana HOM05D004110 ORTHO05D004810 3.3e-99 368.6 635 37.8
Os10g0154600 Oryza sativa ssp. japonica HOM05D004110 ORTHO05D004810 1.6e-90 339.7 654 35.8
HPP92_005015 Vanilla planifolia HOM05D004110 ORTHO05D004810 1.5e-75 290.0 649 31.6
CSS0003289 Camellia sinensis var. sinensis HOM05D004110 ORTHO05D004810 2.5e-75 289.3 200 69.0
ClCG02G011580 Citrullus lanatus HOM05D004110 ORTHO05D004810 4.6e-69 268.5 239 56.1
Solyc11g039890.2 Solanum lycopersicum HOM05D004110 ORTHO05D004810 2.4e-62 246.1 167 76.0
Duzib248G1214 Durio zibethinus HOM05D004110 ORTHO05D004810 8.4e-55 221.1 197 57.9
SMO171G0108 Selaginella moellendorffii HOM05D004110 ORTHO05D004810 2.0e-48 199.9 510 26.9
MD10G1119500 Malus domestica HOM05D004110 ORTHO05D004810 1.3e-44 187.2 208 49.0
FAN27G2584 Fragaria x ananassa HOM05D004110 ORTHO05D004810 2.9e-39 169.5 138 61.6
MD10G1119100 Malus domestica HOM05D004110 ORTHO05D004810 6.3e-34 151.8 127 55.9
CSS0015162 Camellia sinensis var. sinensis HOM05D004110 ORTHO05D004810 4.1e-33 149.1 103 72.8
SEGI_07180 Sequoiadendron giganteum HOM05D004110 ORTHO05D004810 2.6e-32 146.4 406 28.8
CSS0008861 Camellia sinensis var. sinensis HOM05D004110 ORTHO05D004810 2.7e-29 136.3 137 50.4
Hma1.2p1_0032F.1_g019640 Hydrangea macrophylla HOM05D004110 ORTHO05D004810 1.3e-28 134.0 100 66.0
ClCG02G011550 Citrullus lanatus HOM05D004110 ORTHO05D004810 6.7e-28 131.7 155 49.0
COL.COLO4_17261 Corchorus olitorius HOM05D004110 ORTHO05D004810 1.9e-27 130.2 268 34.3
COL.COLO4_17260 Corchorus olitorius HOM05D004110 ORTHO05D004810 2.4e-25 123.2 113 54.9
ClCG02G011590 Citrullus lanatus HOM05D004110 ORTHO05D004810 2.6e-24 119.8 92 58.7
Lj3g0004699 Lotus japonicus HOM05D004110 ORTHO05D004810 9.4e-22 111.3 152 41.4
Gohir.A12G039250 Gossypium hirsutum HOM05D004110 ORTHO05D004810 3.6e-21 109.4 104 49.0
PGSC0003DMG400022052 Solanum tuberosum HOM05D004110 ORTHO05D004810 6.1e-21 108.6 99 60.6
Zm00001eb026660 Zea mays HOM05D004110 ORTHO05D004810 6.7e-20 105.1 127 40.9
Os10g0154566 Oryza sativa ssp. japonica HOM05D004110 ORTHO05D004810 2.6e-19 103.2 127 44.9
AUR62040642 Chenopodium quinoa HOM05D004110 ORTHO05D004810 5.7e-19 102.1 112 46.4
SHI05700 Sapria himalayana HOM05D004110 ORTHO05D004810 9.7e-19 101.3 122 42.6
arahy.Tifrunner.gnm1.ann1.G8A5JV Arachis hypogaea HOM05D004110 ORTHO05D004810 1.3e-18 100.9 87 52.9
HPP92_005007 Vanilla planifolia HOM05D004110 ORTHO05D004810 3.7e-18 99.4 291 28.2
BolC8t52466H Brassica oleracea HOM05D004110 ORTHO05D004810 5.0e-15 89.0 86 51.2
Ciclev10029869m.g Citrus clementina HOM05D004110 ORTHO05D004810 1.9e-14 87.0 136 39.7
Psat1g093160 Pisum sativum HOM05D004110 ORTHO05D004810 5.5e-14 85.5 75 57.3
BcaB03g12223 Brassica carinata HOM05D004110 ORTHO05D004810 1.0e-12 81.3 118 41.5
CSS0014003 Camellia sinensis var. sinensis HOM05D004110 ORTHO05D004810 3.9e-12 79.3 140 37.1
SEGI_16576 Sequoiadendron giganteum HOM05D004110 ORTHO05D004810 4.4e-11 75.9 296 23.3
SHI05698 Sapria himalayana HOM05D004110 ORTHO05D004810 9.7e-11 74.7 80 52.5
AagrBONN_evm.TU.Sc2ySwM_344.4149 Anthoceros agrestis HOM05D004110 ORTHO05D004810 1.3e-10 74.3 156 28.2
VMungo0464G1786 Vigna mungo HOM05D004110 ORTHO05D004810 1.3e-10 74.3 56 58.9
TPR.G40846 Trifolium pratense HOM05D004110 ORTHO05D004810 3.7e-10 72.8 176 33.5
SHI05692 Sapria himalayana HOM05D004110 ORTHO05D004810 8.2e-10 71.6 70 48.6
CBR_g66117 Chara braunii HOM05D000019 ORTHO05D001702 2.4e-09 70.1 106 34.0
Duzib248G0615 Durio zibethinus HOM05D004110 ORTHO05D004810 1.6e-08 67.4 179 30.2
HanXRQChr09g0252681 Helianthus annuus HOM05D004110 ORTHO05D004810 1.6e-08 67.4 59 52.5
Psat0s2087g0160 Pisum sativum HOM05D001944 ORTHO05D002405 7.7e-08 65.1 68 48.5
arahy.Tifrunner.gnm1.ann1.9L03M9 Arachis hypogaea HOM05D004110 ORTHO05D004810 9.4e-06 58.2 55 43.6
Psat0s2088g0120 Pisum sativum HOM05D001944 ORTHO05D002405 9.4e-06 58.2 59 49.2


User provided reference genes

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