Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0007304g0010 Nicotiana tabacum HOM05D004772 ORTHO05D006892 0.0e+00 1203.0 640 100.0
CAN.G14.7 Capsicum annuum HOM05D004772 ORTHO05D006892 1.1e-289 999.6 607 89.5
Solyc01g065580.4 Solanum lycopersicum HOM05D004772 ORTHO05D006892 8.8e-287 989.9 633 85.5
Sopen01g026980 Solanum pennellii HOM05D004772 ORTHO05D006892 1.5e-286 989.2 633 85.5
PGSC0003DMG400001190 Solanum tuberosum HOM05D004772 ORTHO05D006892 4.5e-283 977.6 633 84.8
Peaxi162Scf00065g01018 Petunia axillaris HOM05D004772 ORTHO05D006892 8.8e-271 936.8 636 82.1
Nitab4.5_0000361g0050 Nicotiana tabacum HOM05D004772 ORTHO05D006892 8.3e-269 930.2 508 96.7
Cc03_g01340 Coffea canephora HOM05D004772 ORTHO05D006892 1.1e-225 786.9 638 68.7
MSTRG.24809 Avicennia marina HOM05D004772 ORTHO05D006892 4.0e-223 778.5 643 67.7
Actinidia18636 Actinidia chinensis HOM05D004772 ORTHO05D006892 3.3e-217 758.8 649 65.2
GSVIVG01035090001 Vitis vinifera HOM05D004772 ORTHO05D006892 1.4e-215 753.4 655 65.3
SGA_v2.0_scaffold119G32697 Striga asiatica HOM05D004772 ORTHO05D006892 2.6e-214 749.2 655 64.6
Hma1.2p1_0078F.1_g040280 Hydrangea macrophylla HOM05D004772 ORTHO05D006892 5.8e-214 748.0 645 64.5
Migut.N00065 Erythranthe guttata HOM05D004772 ORTHO05D006892 2.1e-211 739.6 643 64.7
Dinv29709 Davidia involucrata HOM05D004772 ORTHO05D006892 3.5e-211 738.8 652 63.8
Thecc.04G291000 Theobroma cacao HOM05D004772 ORTHO05D006892 1.9e-209 733.0 649 63.0
Lsat_1_v5_gn_6_76160 Lactuca sativa HOM05D004772 ORTHO05D006892 5.6e-209 731.5 660 63.5
PGR004G0606 Punica granatum HOM05D004772 ORTHO05D006892 3.6e-208 728.8 639 64.0
TAR362G0678 Trochodendron aralioides HOM05D004772 ORTHO05D006892 3.6e-208 728.8 589 67.4
ECA240G4356 Erigeron canadensis HOM05D004772 ORTHO05D006892 4.0e-207 725.3 617 65.0
Prupe.1G129500 Prunus persica HOM05D004772 ORTHO05D006892 1.5e-206 723.4 646 63.3
Gohir.A09G063500 Gossypium hirsutum HOM05D004772 ORTHO05D006892 2.0e-206 723.0 669 61.6
Eucgr.E01101 Eucalyptus grandis HOM05D004772 ORTHO05D006892 3.4e-206 722.2 639 63.4
Gorai.006G077200 Gossypium raimondii HOM05D004772 ORTHO05D006892 3.4e-206 722.2 669 62.0
Lj4g0015807 Lotus japonicus HOM05D004772 ORTHO05D006892 5.8e-206 721.5 640 63.4
TWI09G0846 Tripterygium wilfordii HOM05D004772 ORTHO05D006892 1.3e-205 720.3 646 61.9
Gohir.D09G062400 Gossypium hirsutum HOM05D004772 ORTHO05D006892 2.2e-205 719.5 669 61.9
VMungo1215G3292 Vigna mungo HOM05D004772 ORTHO05D006892 3.8e-205 718.8 636 62.4
MD13G1162200 Malus domestica HOM05D004772 ORTHO05D006892 6.4e-205 718.0 644 62.6
CiPaw.02G079000 Carya illinoinensis HOM05D004772 ORTHO05D006892 1.4e-204 716.8 649 63.6
DCAR_027042 Daucus carota HOM05D004772 ORTHO05D006892 4.6e-203 711.8 639 62.1
HanXRQChr03g0085471 Helianthus annuus HOM05D004772 ORTHO05D006892 6.0e-203 711.4 556 69.1
Nn3g21575 Nelumbo nucifera HOM05D004772 ORTHO05D006892 7.9e-203 711.1 651 63.3
Lj6A683G52 Lonicera japonica HOM05D004772 ORTHO05D006892 1.8e-202 709.9 650 62.5
Cpa.g.sc9.115 Carica papaya HOM05D004772 ORTHO05D006892 5.1e-202 708.4 636 62.9
Glyma.07G244300 Glycine max HOM05D004772 ORTHO05D006892 1.5e-201 706.8 642 62.0
TWI73G1272 Tripterygium wilfordii HOM05D004772 ORTHO05D006892 1.5e-201 706.8 646 61.1
Phvul.003G108600 Phaseolus vulgaris HOM05D004772 ORTHO05D006892 4.3e-201 705.3 635 62.2
RcHm_v2.0_Chr4g0423801 Rosa chinensis HOM05D004772 ORTHO05D006892 1.3e-200 703.7 648 60.6
MD16G1162000 Malus domestica HOM05D004772 ORTHO05D006892 2.1e-200 703.0 642 61.5
FvH4_4g18900 Fragaria vesca HOM05D004772 ORTHO05D006892 8.1e-200 701.0 596 63.1
Potri.010G005600 Populus trichocarpa HOM05D004772 ORTHO05D006892 1.1e-199 700.7 639 61.5
Glyma.17G029600 Glycine max HOM05D004772 ORTHO05D006892 4.0e-199 698.7 640 61.1
Ca_21472_v3 Cicer arietinum L. HOM05D004772 ORTHO05D006892 5.3e-199 698.4 642 60.7
QL06p010892 Quercus lobata HOM05D004772 ORTHO05D006892 5.3e-199 698.4 641 62.4
Rhsim04G0228200 Rhododendron simsii HOM05D004772 ORTHO05D006892 1.0e-197 694.1 652 61.8
Sed0023608 Sechium edule HOM05D004772 ORTHO05D006892 1.0e-197 694.1 641 61.9
Medtr4g120470 Medicago truncatula HOM05D004772 ORTHO05D006892 1.3e-197 693.7 638 61.1
Potri.008G211400 Populus trichocarpa HOM05D004772 ORTHO05D006892 2.2e-197 693.0 645 61.1
CsaV3_6G022660 Cucumis sativus L. HOM05D004772 ORTHO05D006892 2.9e-197 692.6 649 61.0
CANSAT78G1075 Cannabis sativa HOM05D004772 ORTHO05D006892 4.9e-197 691.8 649 60.1
FAN12G2191 Fragaria x ananassa HOM05D004772 ORTHO05D006892 2.5e-196 689.5 615 61.1
TPR.G22770 Trifolium pratense HOM05D004772 ORTHO05D006892 5.5e-196 688.3 570 64.7
FAN07G2363 Fragaria x ananassa HOM05D004772 ORTHO05D006892 9.3e-196 687.6 617 61.1
FAN12G3151 Fragaria x ananassa HOM05D004772 ORTHO05D006892 9.3e-196 687.6 615 61.1
Oeu054008.1 Olea europaea HOM05D004772 ORTHO05D006892 2.1e-195 686.4 531 68.9
Sabra10G0004800 Salix brachista HOM05D004772 ORTHO05D006892 4.6e-195 685.3 685 58.2
PSO731G0023 Papaver somniferum HOM05D004772 ORTHO05D006892 3.9e-194 682.2 641 61.0
MELO3C021296.2 Cucumis melo HOM05D004772 ORTHO05D006892 6.7e-194 681.4 649 59.9
Lalb_Chr13g0298261 Lupinus albus HOM05D004772 ORTHO05D006892 1.1e-193 680.6 571 63.7
PSO764G0237 Papaver somniferum HOM05D004772 ORTHO05D006892 1.9e-193 679.9 648 60.3
Cfa015449 Carpinus fangiana HOM05D004772 ORTHO05D006892 3.3e-193 679.1 655 60.3
Sc19g0003370 Simmondsia chinensis HOM05D004772 ORTHO05D006892 9.6e-193 677.6 645 59.7
Aqoxy5G00804 Aquilegia oxysepala HOM05D004772 ORTHO05D006892 1.3e-192 677.2 650 60.6
SalBow5G3355 Salvia bowleyana HOM05D004772 ORTHO05D006892 2.1e-192 676.4 648 61.7
Manes.03G200000 Manihot esculenta HOM05D004772 ORTHO05D006892 4.5e-190 668.7 647 59.4
Thhalv10020259m.g Eutrema salsugineum HOM05D004772 ORTHO05D006892 2.9e-189 666.0 642 59.3
C05p49530 Brassica napus HOM05D004772 ORTHO05D006892 6.5e-189 664.8 634 58.7
BcaC05g28847 Brassica carinata HOM05D004772 ORTHO05D006892 1.9e-188 663.3 636 59.1
BolC5t33706H Brassica oleracea HOM05D004772 ORTHO05D006892 5.5e-188 661.8 639 58.4
arahy.Tifrunner.gnm1.ann1.0U01EG Arachis hypogaea HOM05D004772 ORTHO05D006892 6.1e-187 658.3 637 59.3
ClCG06G004870 Citrullus lanatus HOM05D004772 ORTHO05D006892 6.1e-187 658.3 666 58.0
BraA05t22104Z Brassica rapa HOM05D004772 ORTHO05D006892 7.9e-187 657.9 643 57.9
THA.LOC104802592 Tarenaya hassleriana HOM05D004772 ORTHO05D006892 5.1e-186 655.2 653 57.9
Sp3g15060 Schrenkiella parvula HOM05D004772 ORTHO05D006892 6.7e-186 654.8 642 58.7
A05p32820 Brassica napus HOM05D004772 ORTHO05D006892 1.5e-185 653.7 640 57.5
BcaB06g25777 Brassica carinata HOM05D004772 ORTHO05D006892 2.5e-185 652.9 630 58.9
Carub.0003s1652 Capsella rubella HOM05D004772 ORTHO05D006892 2.5e-185 652.9 641 57.4
AL3G29730 Arabidopsis lyrata HOM05D004772 ORTHO05D006892 3.7e-184 649.0 591 60.4
Haze_01138 Corylus avellana HOM05D004772 ORTHO05D006892 3.7e-184 649.0 650 59.1
Haze_01142 Corylus avellana HOM05D004772 ORTHO05D006892 1.8e-183 646.7 655 58.8
AT3G16810 Arabidopsis thaliana HOM05D004772 ORTHO05D006892 1.0e-181 641.0 636 57.1
Aa31LG8G3880 Aethionema arabicum HOM05D004772 ORTHO05D006892 4.2e-180 635.6 652 57.4
Duzib151G1106 Durio zibethinus HOM05D004772 ORTHO05D006892 3.0e-178 629.4 650 56.3
AUR62016163 Chenopodium quinoa HOM05D004772 ORTHO05D006892 3.9e-178 629.0 638 56.9
Hund11943 Selenicereus undatus HOM05D004772 ORTHO05D006892 7.4e-177 624.8 623 57.3
vmacro08098 Vaccinium macrocarpon HOM05D004772 ORTHO05D006892 1.8e-175 620.2 604 61.4
AUR62035077 Chenopodium quinoa HOM05D004772 ORTHO05D006892 2.2e-173 613.2 662 54.5
Ciclev10004585m.g Citrus clementina HOM05D004772 ORTHO05D006892 6.5e-173 611.7 642 56.7
CSS0008369 Camellia sinensis var. sinensis HOM05D004772 ORTHO05D006892 5.5e-172 608.6 608 59.4
ATR0693G185 Amborella trichopoda HOM05D004772 ORTHO05D006892 1.4e-170 604.0 628 54.9
EL10Ac3g04940 Beta vulgaris HOM05D004772 ORTHO05D006892 4.1e-167 592.4 612 56.7
CARHR092060 Cardamine hirsuta HOM05D004772 ORTHO05D006892 7.2e-164 581.6 632 54.6
CAN.G1132.3 Capsicum annuum HOM05D004772 ORTHO05D006892 1.1e-161 574.3 367 86.4
CDE02G0409 Ceratophyllum demersum HOM05D004772 ORTHO05D006892 9.7e-161 571.2 644 52.5
Psat4g024680 Pisum sativum HOM05D004772 ORTHO05D006892 1.7e-160 570.5 638 53.6
CSS0024712 Camellia sinensis var. sinensis HOM05D004772 ORTHO05D006892 4.1e-159 565.8 612 57.2
MBI18_g04559_MAGBIO Magnolia biondii HOM05D004772 ORTHO05D006892 7.0e-159 565.1 644 53.3
COL.COLO4_34697 Corchorus olitorius HOM05D004772 ORTHO05D006892 2.6e-158 563.1 648 52.8
Atru.chr4.2923 Acer truncatum HOM05D004772 ORTHO05D006892 3.5e-150 536.2 651 51.8
Os03g0831100 Oryza sativa ssp. japonica HOM05D004772 ORTHO05D006892 5.9e-150 535.4 655 48.7
Hma1.2p1_0078F.1_g040270 Hydrangea macrophylla HOM05D004772 ORTHO05D006892 1.6e-147 527.3 447 66.0
HPP92_010664 Vanilla planifolia HOM05D004772 ORTHO05D006892 3.5e-134 483.0 596 50.0
SMO367G0742 Selaginella moellendorffii HOM05D004772 ORTHO05D006892 1.7e-133 480.7 571 47.8
Pp3c5_10580 Physcomitrium patens HOM05D004772 ORTHO05D006892 1.2e-126 458.0 646 45.2
Mapoly0099s0044 Marchantia polymorpha HOM05D004772 ORTHO05D006892 1.6e-123 447.6 658 43.9
unitig_747.g21102 Utricularia gibba HOM05D004772 ORTHO05D006892 4.4e-113 412.9 648 45.1
AagrBONN_evm.TU.Sc2ySwM_344.4680 Anthoceros agrestis HOM05D004772 ORTHO05D006892 2.1e-110 404.1 644 40.5
Oeu006429.1 Olea europaea HOM05D004772 ORTHO05D006892 2.7e-102 377.1 536 46.1
SHI00201 Sapria himalayana HOM05D004772 ORTHO05D006892 2.3e-101 374.0 309 65.7
CBR_g50950 Chara braunii HOM05D004772 ORTHO05D006892 5.3e-90 336.3 640 35.5
Psat5g033800 Pisum sativum HOM05D004772 ORTHO05D006892 7.1e-87 325.9 351 53.3
CDE09G0311 Ceratophyllum demersum HOM05D004772 ORTHO05D006892 6.7e-85 319.3 246 67.5
AUR62015585 Chenopodium quinoa HOM05D004772 ORTHO05D006892 3.7e-83 313.5 423 46.3
FAN17G1707 Fragaria x ananassa HOM05D004772 ORTHO05D006892 3.8e-80 303.5 285 58.2
CDE09G1302 Ceratophyllum demersum HOM05D004772 ORTHO05D006892 2.5e-79 300.8 305 54.8
Zm00001eb063600 Zea mays HOM05D004772 ORTHO05D006892 3.5e-70 270.4 381 43.6
MCO02G008 Micromonas commoda HOM05D004772 ORTHO05D006892 7.7e-65 252.7 657 31.4
Cre12.g528950 Chlamydomonas reinhardtii HOM05D004772 ORTHO05D006892 5.1e-61 240.0 709 28.2
AL769U10010 Arabidopsis lyrata HOM05D000209 ORTHO05D000129 1.2e-46 192.2 194 57.7
BolC5t30856H Brassica oleracea HOM05D004772 ORTHO05D006892 7.5e-44 183.0 238 46.6
C09p33250 Brassica napus HOM05D004772 ORTHO05D006892 3.7e-43 180.6 243 45.3
Hma1.2p1_0078F.1_g040290 Hydrangea macrophylla HOM05D004772 ORTHO05D006892 8.2e-43 179.5 137 65.7
PRCOL_00000476 Prasinoderma coloniale HOM05D004772 ORTHO05D006892 1.1e-42 179.1 608 27.3
BolC9t56162H Brassica oleracea HOM05D004772 ORTHO05D006892 2.0e-36 158.3 238 43.3
Lalb_Chr12g0201101 Lupinus albus HOM05D004772 ORTHO05D006892 5.7e-36 156.8 177 49.7
C05p21600 Brassica napus HOM05D004772 ORTHO05D006892 1.3e-35 155.6 238 42.4
SGA_v2.0_scaffold119G32683 Striga asiatica HOM05D000890 ORTHO05D000697 1.2e-30 139.0 122 59.0
Glyma.08G191100 Glycine max HOM05D004772 ORTHO05D006892 1.5e-28 132.1 99 66.7
SalBow1G8756 Salvia bowleyana HOM05D004772 ORTHO05D006892 1.3e-27 129.0 186 45.2
SEGI_16207 Sequoiadendron giganteum HOM05D004772 ORTHO05D006892 1.7e-27 128.6 95 64.2
Lalb_Chr12g0201121 Lupinus albus HOM05D004772 ORTHO05D006892 3.7e-27 127.5 98 65.3
Cfa022899 Carpinus fangiana HOM05D004772 ORTHO05D006892 1.2e-25 122.5 419 24.8
BcaC05g26176 Brassica carinata HOM05D004772 ORTHO05D006892 2.7e-25 121.3 143 46.9
Actinidia40307 Actinidia chinensis HOM05D004772 ORTHO05D006892 5.0e-24 117.1 154 53.9
Lalb_Chr12g0201111 Lupinus albus HOM05D004772 ORTHO05D020841 1.8e-21 108.6 146 47.3
SGA_v2.0_scaffold594G53106 Striga asiatica HOM05D004772 ORTHO05D006892 1.7e-19 102.1 298 30.2
Psat1g126160 Pisum sativum HOM05D004772 ORTHO05D009869 2.8e-14 84.7 77 62.3
Zm00001eb253290 Zea mays HOM05D004772 ORTHO05D037858 8.0e-14 83.2 133 44.4
BcaC04g21315 Brassica carinata HOM05D004772 ORTHO05D006892 2.3e-13 81.6 106 46.2
BcaC01g03298 Brassica carinata HOM05D003366 ORTHO05D004045 3.1e-13 81.3 137 43.8
Zm00001eb258700 Zea mays HOM05D004772 ORTHO05D020841 2.6e-12 78.2 142 34.5
Zm00001eb103920 Zea mays HOM05D004772 ORTHO05D020841 3.4e-12 77.8 142 34.5
Nn4g25712 Nelumbo nucifera HOM05D004772 ORTHO05D006892 4.4e-12 77.4 120 41.7
Zm00001eb355950 Zea mays HOM05D004772 ORTHO05D020841 5.8e-12 77.0 142 33.8
Zm00001eb103930 Zea mays HOM05D004772 ORTHO05D020841 7.5e-12 76.6 142 33.8
Zm00001eb246110 Zea mays HOM05D004772 ORTHO05D020841 7.5e-12 76.6 142 33.8
HPP92_010686 Vanilla planifolia HOM05D004772 ORTHO05D006892 1.7e-11 75.5 125 42.4
Zm00001eb160280 Zea mays HOM05D004772 ORTHO05D020841 2.2e-11 75.1 142 33.1
BcaB04g18910 Brassica carinata HOM05D004772 ORTHO05D032275 3.9e-08 64.3 47 57.4
Medtr4g120460 Medicago truncatula HOM05D004772 ORTHO05D032275 2.5e-07 61.6 44 61.4
Psat1g126080 Pisum sativum HOM05D004772 ORTHO05D032275 8.1e-06 56.6 72 45.8


User provided reference genes

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