Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0007217g0010 Nicotiana tabacum HOM05D006064 ORTHO05D007619 3.2e-50 201.4 102 100.0
Nitab4.5_0001315g0190 Nicotiana tabacum HOM05D006064 ORTHO05D007619 4.1e-45 184.5 99 94.9
CAN.G438.28 Capsicum annuum HOM05D006064 ORTHO05D007619 2.6e-44 181.8 102 88.2
PGSC0003DMG400002547 Solanum tuberosum HOM05D006064 ORTHO05D007619 2.9e-43 178.3 102 90.2
Solyc03g120630.4 Solanum lycopersicum HOM05D006064 ORTHO05D007619 4.2e-42 174.5 96 89.6
Hma1.2p1_1195F.1_g265790 Hydrangea macrophylla HOM05D006064 ORTHO05D007619 1.1e-37 159.8 96 84.4
Hma1.2p1_3147F.1_g333156 Hydrangea macrophylla HOM05D006064 ORTHO05D007619 1.1e-37 159.8 96 84.4
Cc04_g03040 Coffea canephora HOM05D006064 ORTHO05D007619 2.7e-36 155.2 99 81.8
Manes.04G130000 Manihot esculenta HOM05D006064 ORTHO05D007619 2.7e-36 155.2 104 76.0
CANSAT56G1509 Cannabis sativa HOM05D006064 ORTHO05D007619 7.7e-36 153.7 100 79.0
MBI09_g14014_MAGBIO Magnolia biondii HOM05D006064 ORTHO05D007619 2.2e-35 152.1 101 75.2
Actinidia21680 Actinidia chinensis HOM05D006064 ORTHO05D007619 2.9e-35 151.8 98 76.5
FAN05G4262 Fragaria x ananassa HOM05D006064 ORTHO05D007619 3.8e-35 151.4 97 78.4
COL.COLO4_30435 Corchorus olitorius HOM05D006064 ORTHO05D007619 5.0e-35 151.0 100 79.0
TAR626G0023 Trochodendron aralioides HOM05D006064 ORTHO05D007619 5.0e-35 151.0 96 78.1
ATR0693G299 Amborella trichopoda HOM05D006064 ORTHO05D007619 6.5e-35 150.6 99 77.8
FvH4_6g31770 Fragaria vesca HOM05D006064 ORTHO05D007619 8.5e-35 150.2 96 77.1
Lsat_1_v5_gn_5_130940 Lactuca sativa HOM05D006064 ORTHO05D007619 8.5e-35 150.2 96 76.0
Aqoxy7G01608 Aquilegia oxysepala HOM05D006064 ORTHO05D007619 1.1e-34 149.8 97 77.3
Cpa.g.sc98.5 Carica papaya HOM05D006064 ORTHO05D007619 1.1e-34 149.8 104 76.0
Dinv38021 Davidia involucrata HOM05D006064 ORTHO05D007619 1.1e-34 149.8 96 78.1
Duzib160G0510 Durio zibethinus HOM05D006064 ORTHO05D007619 1.1e-34 149.8 100 76.0
CSS0001890 Camellia sinensis var. sinensis HOM05D006064 ORTHO05D007619 1.5e-34 149.4 96 75.0
SGA_v2.0_scaffold69G23360 Striga asiatica HOM05D006064 ORTHO05D007619 1.5e-34 149.4 102 71.6
CSS0016455 Camellia sinensis var. sinensis HOM05D006064 ORTHO05D007619 1.9e-34 149.1 96 75.0
Nn2g11694 Nelumbo nucifera HOM05D006064 ORTHO05D007619 1.9e-34 149.1 96 76.0
DCAR_016211 Daucus carota HOM05D006064 ORTHO05D007619 2.5e-34 148.7 97 77.3
Duzib235G0379 Durio zibethinus HOM05D006064 ORTHO05D007619 2.5e-34 148.7 100 76.0
FAN02G0676 Fragaria x ananassa HOM05D006064 ORTHO05D007619 2.5e-34 148.7 96 77.1
FAN09G1878 Fragaria x ananassa HOM05D006064 ORTHO05D007619 3.2e-34 148.3 96 78.1
Gohir.D05G131300 Gossypium hirsutum HOM05D006064 ORTHO05D007619 4.2e-34 147.9 100 76.0
Gorai.009G135000 Gossypium raimondii HOM05D006064 ORTHO05D007619 4.2e-34 147.9 100 76.0
Gorai.011G074400 Gossypium raimondii HOM05D006064 ORTHO05D007619 4.2e-34 147.9 97 76.3
SalBow2G0408 Salvia bowleyana HOM05D006064 ORTHO05D007619 4.2e-34 147.9 101 74.3
CDE04G2099 Ceratophyllum demersum HOM05D006064 ORTHO05D007619 5.5e-34 147.5 96 75.0
FAN14G0180 Fragaria x ananassa HOM05D006064 ORTHO05D007619 5.5e-34 147.5 96 76.0
RcHm_v2.0_Chr2g0138941 Rosa chinensis HOM05D006064 ORTHO05D007619 5.5e-34 147.5 98 77.6
CsaV3_7G033420 Cucumis sativus L. HOM05D006064 ORTHO05D007619 7.2e-34 147.1 102 73.5
Gohir.D10G070100 Gossypium hirsutum HOM05D006064 ORTHO05D007619 7.2e-34 147.1 97 76.3
Sabra01G0155400 Salix brachista HOM05D006064 ORTHO05D007619 7.2e-34 147.1 101 76.2
Lj5C58T14 Lonicera japonica HOM05D006064 ORTHO05D007619 9.4e-34 146.7 101 72.3
SGA_v2.0_scaffold5G02555 Striga asiatica HOM05D006064 ORTHO05D007619 9.4e-34 146.7 100 75.0
Gohir.A05G131800 Gossypium hirsutum HOM05D006064 ORTHO05D007619 1.2e-33 146.4 100 75.0
Potri.001G184000 Populus trichocarpa HOM05D006064 ORTHO05D007619 1.2e-33 146.4 101 75.2
Gohir.A10G081300 Gossypium hirsutum HOM05D006064 ORTHO05D007619 1.6e-33 146.0 97 75.3
Thecc.06G092400 Theobroma cacao HOM05D006064 ORTHO05D007619 1.6e-33 146.0 100 73.0
QL05p021654 Quercus lobata HOM05D006064 ORTHO05D007619 2.7e-33 145.2 99 75.8
TAR383G1034 Trochodendron aralioides HOM05D006064 ORTHO05D007619 2.7e-33 145.2 96 74.0
Eucgr.F03039 Eucalyptus grandis HOM05D006064 ORTHO05D007619 4.7e-33 144.4 103 72.8
Sed0002776 Sechium edule HOM05D006064 ORTHO05D007619 4.7e-33 144.4 101 72.3
GSVIVG01017072001 Vitis vinifera HOM05D006064 ORTHO05D007619 4.7e-33 144.4 96 75.0
Ah.01g005550 Amaranthus hybridus HOM05D006064 ORTHO05D007619 6.1e-33 144.1 96 77.1
ClCG09G001940 Citrullus lanatus HOM05D006064 ORTHO05D007619 6.1e-33 144.1 101 72.3
Cfa002095 Carpinus fangiana HOM05D006064 ORTHO05D007619 8.0e-33 143.7 101 73.3
MELO3C024255.2 Cucumis melo HOM05D006064 ORTHO05D007619 8.0e-33 143.7 102 71.6
Glyma.15G016400 Glycine max HOM05D006064 ORTHO05D007619 1.0e-32 143.3 99 73.7
Haze_16361 Corylus avellana HOM05D006064 ORTHO05D007619 1.4e-32 142.9 101 73.3
PSO782G0135 Papaver somniferum HOM05D006064 ORTHO05D007619 1.4e-32 142.9 97 73.2
Prupe.3G067300 Prunus persica HOM05D006064 ORTHO05D007619 1.4e-32 142.9 98 75.5
Ah.01g021630 Amaranthus hybridus HOM05D006064 ORTHO05D007619 1.8e-32 142.5 100 76.0
Glyma.13G357200 Glycine max HOM05D006064 ORTHO05D007619 2.3e-32 142.1 96 75.0
PSO566G0311 Papaver somniferum HOM05D006064 ORTHO05D007619 3.0e-32 141.7 97 72.2
PGR102G3343 Punica granatum HOM05D006064 ORTHO05D007619 5.2e-32 141.0 102 73.5
Oeu033507.1 Olea europaea HOM05D006064 ORTHO05D007619 1.5e-31 139.4 102 69.6
EL10Ac9g22030 Beta vulgaris HOM05D006064 ORTHO05D007619 2.6e-31 138.7 100 72.0
CSS0048088 Camellia sinensis var. sinensis HOM05D006064 ORTHO05D007619 3.4e-31 138.3 96 70.8
HanXRQChr12g0360791 Helianthus annuus HOM05D006064 ORTHO05D007619 4.4e-31 137.9 96 74.0
THA.LOC104800422 Tarenaya hassleriana HOM05D006064 ORTHO05D007619 4.4e-31 137.9 102 70.6
Ciclev10026679m.g Citrus clementina HOM05D006064 ORTHO05D007619 5.7e-31 137.5 104 67.3
AL2G41710 Arabidopsis lyrata HOM05D006064 ORTHO05D007619 7.5e-31 137.1 96 71.9
Thhalv10019289m.g Eutrema salsugineum HOM05D006064 ORTHO05D007619 7.5e-31 137.1 98 71.4
TWI12G0791 Tripterygium wilfordii HOM05D006064 ORTHO05D007619 7.5e-31 137.1 104 68.3
CARHR074660 Cardamine hirsuta HOM05D006064 ORTHO05D007619 9.8e-31 136.7 100 70.0
CiPaw.02G148800 Carya illinoinensis HOM05D006064 ORTHO05D007619 9.8e-31 136.7 102 68.6
MSTRG.11053 Avicennia marina HOM05D006064 ORTHO05D007619 1.7e-30 136.0 98 71.4
Carub.0002s2765 Capsella rubella HOM05D006064 ORTHO05D007619 3.7e-30 134.8 98 71.4
TWI75G0440 Tripterygium wilfordii HOM05D006064 ORTHO05D007619 3.7e-30 134.8 104 68.3
Sc12g0009460 Simmondsia chinensis HOM05D006064 ORTHO05D007619 4.8e-30 134.4 97 74.2
unitig_37.g12253 Utricularia gibba HOM05D000346 ORTHO05D000326 4.8e-30 134.4 99 66.7
arahy.Tifrunner.gnm1.ann1.MEX591 Arachis hypogaea HOM05D006064 ORTHO05D007619 6.3e-30 134.0 100 67.0
AUR62011660 Chenopodium quinoa HOM05D006064 ORTHO05D007619 6.3e-30 134.0 103 69.9
Lj3g0008796 Lotus japonicus HOM05D006064 ORTHO05D007619 6.3e-30 134.0 96 71.9
Rhsim08G0223400 Rhododendron simsii HOM05D006064 ORTHO05D007619 6.3e-30 134.0 108 66.7
Aa31LG4G130 Aethionema arabicum HOM05D006064 ORTHO05D007619 1.1e-29 133.3 97 70.1
unitig_46.g18557 Utricularia gibba HOM05D006064 ORTHO05D007619 1.1e-29 133.3 101 66.3
BcaB07g30746 Brassica carinata HOM05D006064 ORTHO05D007619 1.8e-29 132.5 101 67.3
Migut.I00941 Erythranthe guttata HOM05D006064 ORTHO05D007619 1.8e-29 132.5 105 67.6
AUR62016483 Chenopodium quinoa HOM05D006064 ORTHO05D007619 2.4e-29 132.1 103 70.9
Thhalv10001197m.g Eutrema salsugineum HOM05D006064 ORTHO05D007619 2.4e-29 132.1 99 66.7
AT1G79850 Arabidopsis thaliana HOM05D006064 ORTHO05D007619 5.4e-29 131.0 96 69.8
Medtr2g101770 Medicago truncatula HOM05D006064 ORTHO05D007619 5.4e-29 131.0 100 66.0
Nn3g18074 Nelumbo nucifera HOM05D006064 ORTHO05D007619 7.0e-29 130.6 96 71.9
CSS0034695 Camellia sinensis var. sinensis HOM05D006064 ORTHO05D007619 9.1e-29 130.2 96 68.8
BcaC04g21590 Brassica carinata HOM05D006064 ORTHO05D007619 1.2e-28 129.8 96 67.7
C09p30100 Brassica napus HOM05D006064 ORTHO05D007619 1.2e-28 129.8 96 67.7
BolC9t55874H Brassica oleracea HOM05D006064 ORTHO05D007619 1.2e-28 129.8 96 67.7
A09p23350 Brassica napus HOM05D006064 ORTHO05D007619 1.6e-28 129.4 96 67.7
A09p23360 Brassica napus HOM05D006064 ORTHO05D007619 1.6e-28 129.4 96 68.8
BolC9t55875H Brassica oleracea HOM05D006064 ORTHO05D007619 1.6e-28 129.4 96 68.8
BraA09t37936Z Brassica rapa HOM05D006064 ORTHO05D007619 1.6e-28 129.4 96 67.7
BraA09t37937Z Brassica rapa HOM05D006064 ORTHO05D007619 1.6e-28 129.4 96 68.8
Lalb_Chr22g0351371 Lupinus albus HOM05D006064 ORTHO05D007619 2.7e-28 128.6 98 67.3
Phvul.005G168800 Phaseolus vulgaris HOM05D006064 ORTHO05D007619 2.7e-28 128.6 99 65.7
BcaC04g21589 Brassica carinata HOM05D006064 ORTHO05D007619 5.9e-28 127.5 96 67.7
MD17G1191100 Malus domestica HOM05D006064 ORTHO05D007619 5.9e-28 127.5 98 69.4
Ca_01132_v3 Cicer arietinum L. HOM05D006064 ORTHO05D007619 7.7e-28 127.1 100 65.0
C09p30110 Brassica napus HOM05D006064 ORTHO05D007619 2.3e-27 125.6 96 66.7
Sp2g12850 Schrenkiella parvula HOM05D006064 ORTHO05D007619 5.0e-27 124.4 96 65.6
vmacro18887 Vaccinium macrocarpon HOM05D006064 ORTHO05D007619 5.0e-27 124.4 96 68.8
TPR.G37258 Trifolium pratense HOM05D006064 ORTHO05D007619 1.1e-26 123.2 103 60.2
VMungo1080G0744 Vigna mungo HOM05D006064 ORTHO05D007619 3.3e-26 121.7 87 70.1
SEGI_37104 Sequoiadendron giganteum HOM05D006064 ORTHO05D007619 2.8e-25 118.6 93 65.6
AagrBONN_evm.TU.Sc2ySwM_344.4090 Anthoceros agrestis HOM05D006064 ORTHO05D007619 5.7e-23 110.9 97 56.7
Os04g0691600 Oryza sativa ssp. japonica HOM05D006064 ORTHO05D007619 9.8e-23 110.2 77 70.1
AagrBONN_evm.TU.Sc2ySwM_344.4095 Anthoceros agrestis HOM05D006064 ORTHO05D007619 1.3e-22 109.8 97 55.7
Zm00001eb367450 Zea mays HOM05D006064 ORTHO05D007619 1.7e-22 109.4 95 61.1
Peaxi162Scf00015g00005 Petunia axillaris HOM05D006064 ORTHO05D007619 1.1e-21 106.7 62 79.0
Zm00001eb434460 Zea mays HOM05D006064 ORTHO05D007619 2.4e-21 105.5 78 65.4
Actinidia32730 Actinidia chinensis HOM05D006064 ORTHO05D007619 7.0e-21 104.0 96 61.5
Pp3c11_14630 Physcomitrium patens HOM05D006064 ORTHO05D007619 5.0e-19 97.8 72 61.1
Pp3c1_12860 Physcomitrium patens HOM05D006064 ORTHO05D007619 1.5e-18 96.3 93 51.6
Mapoly0027s0119 Marchantia polymorpha HOM05D006064 ORTHO05D007619 1.4e-16 89.7 98 46.9
CBR_g33913 Chara braunii HOM05D006064 ORTHO05D007619 8.9e-16 87.0 76 53.9
MD09G1209400 Malus domestica HOM05D006064 ORTHO05D007619 1.7e-14 82.8 49 81.6
Actinidia13476 Actinidia chinensis HOM05D006064 ORTHO05D007619 4.9e-14 81.3 64 64.1
SMO358G0237 Selaginella moellendorffii HOM05D006064 ORTHO05D007619 8.3e-14 80.5 69 56.5
SalBow1G4549 Salvia bowleyana HOM05D006064 ORTHO05D007619 3.2e-13 78.6 76 56.6
Actinidia35657 Actinidia chinensis HOM05D006064 ORTHO05D007619 1.2e-12 76.6 96 46.9
Haze_02816 Corylus avellana HOM05D002629 ORTHO05D003221 3.1e-08 62.0 46 63.0
Cre02.g118950 Chlamydomonas reinhardtii HOM05D004588 ORTHO05D005365 8.9e-08 60.5 74 43.2
PRCOL_00005962 Prasinoderma coloniale HOM05D006064 ORTHO05D007619 2.6e-07 58.9 66 43.9
MCO03G166 Micromonas commoda HOM05D006064 ORTHO05D007619 7.5e-07 57.4 61 44.3
Pp3c1_39230 Physcomitrium patens HOM05D004588 ORTHO05D005365 9.8e-07 57.0 70 37.1
Atru.chr8.1086 Acer truncatum HOM05D004588 ORTHO05D005365 1.3e-06 56.6 74 39.2
Oeu008630.1 Olea europaea HOM05D004588 ORTHO05D005365 2.9e-06 55.5 74 40.5
HPP92_001963 Vanilla planifolia HOM05D004588 ORTHO05D005365 3.7e-06 55.1 74 37.8
Ciclev10009986m.g Citrus clementina HOM05D004588 ORTHO05D005365 4.9e-06 54.7 74 39.2
Mapoly0128s0026 Marchantia polymorpha HOM05D004588 ORTHO05D005365 4.9e-06 54.7 70 38.6
SMO230G0073 Selaginella moellendorffii HOM05D004588 ORTHO05D005365 6.4e-06 54.3 77 39.0
arahy.Tifrunner.gnm1.ann1.7DYL36 Arachis hypogaea HOM05D004588 ORTHO05D005365 8.3e-06 53.9 74 36.5
arahy.Tifrunner.gnm1.ann1.7K7KM4 Arachis hypogaea HOM05D004588 ORTHO05D005365 8.3e-06 53.9 74 36.5


User provided reference genes

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