Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0007099g0010 Nicotiana tabacum HOM05D005266 ORTHO05D006416 6.4e-193 677.2 326 100.0
Nitab4.5_0000223g0310 Nicotiana tabacum HOM05D005266 ORTHO05D006416 2.9e-185 651.7 326 96.9
Sopen08g030390 Solanum pennellii HOM05D005266 ORTHO05D006416 6.4e-177 624.0 326 90.8
Solyc08g082100.3 Solanum lycopersicum HOM05D005266 ORTHO05D006416 5.1e-174 614.4 326 90.2
PGSC0003DMG400012295 Solanum tuberosum HOM05D005266 ORTHO05D006416 3.4e-170 601.7 364 81.3
Cc08_g15880 Coffea canephora HOM05D005266 ORTHO05D006416 3.3e-149 531.9 326 76.1
Peaxi162Scf00074g01141 Petunia axillaris HOM05D005266 ORTHO05D006416 7.4e-149 530.8 326 80.1
Rhsim07G0083300 Rhododendron simsii HOM05D005266 ORTHO05D006416 3.1e-147 525.4 324 75.3
GSVIVG01019509001 Vitis vinifera HOM05D005266 ORTHO05D006416 7.7e-146 520.8 326 73.3
vmacro13906 Vaccinium macrocarpon HOM05D005266 ORTHO05D006416 1.7e-145 519.6 326 73.6
CSS0021201 Camellia sinensis var. sinensis HOM05D005266 ORTHO05D006416 5.5e-144 514.6 326 73.3
Hma1.2p1_0952F.1_g241000 Hydrangea macrophylla HOM05D005266 ORTHO05D006416 7.2e-144 514.2 324 72.8
CSS0021291 Camellia sinensis var. sinensis HOM05D005266 ORTHO05D006416 3.6e-143 511.9 327 73.1
Duzib205G1998 Durio zibethinus HOM05D005266 ORTHO05D006416 1.4e-142 510.0 325 73.2
Actinidia27330 Actinidia chinensis HOM05D005266 ORTHO05D006416 2.3e-142 509.2 327 72.8
Cfa012815 Carpinus fangiana HOM05D005266 ORTHO05D006416 2.3e-142 509.2 327 72.5
Migut.A00673 Erythranthe guttata HOM05D005266 ORTHO05D006416 2.3e-142 509.2 327 72.5
Prupe.5G116300 Prunus persica HOM05D005266 ORTHO05D006416 2.3e-142 509.2 327 71.9
Ciclev10021146m.g Citrus clementina HOM05D005266 ORTHO05D006416 3.0e-142 508.8 326 73.9
SalBow1G7588 Salvia bowleyana HOM05D005266 ORTHO05D006416 3.0e-142 508.8 326 72.7
SalBow1G3663 Salvia bowleyana HOM05D005266 ORTHO05D006416 3.9e-142 508.4 326 72.7
Lj8C194T1 Lonicera japonica HOM05D005266 ORTHO05D006416 6.7e-142 507.7 324 72.2
Atru.chr9.2024 Acer truncatum HOM05D005266 ORTHO05D006416 2.0e-141 506.1 326 73.3
MSTRG.11934 Avicennia marina HOM05D005266 ORTHO05D006416 9.7e-141 503.8 326 70.9
COL.COLO4_10665 Corchorus olitorius HOM05D005266 ORTHO05D006416 1.7e-140 503.1 325 72.3
Thecc.03G294500 Theobroma cacao HOM05D005266 ORTHO05D006416 1.7e-140 503.1 326 72.7
Manes.02G011800 Manihot esculenta HOM05D005266 ORTHO05D006416 1.1e-139 500.4 326 71.8
CANSAT21G1278 Cannabis sativa HOM05D005266 ORTHO05D006416 1.8e-139 499.6 326 71.2
Atru.chr9.2034 Acer truncatum HOM05D005266 ORTHO05D006416 3.1e-139 498.8 326 72.4
MD06G1103700 Malus domestica HOM05D005266 ORTHO05D006416 4.5e-138 495.0 327 70.9
RcHm_v2.0_Chr7g0195271 Rosa chinensis HOM05D005266 ORTHO05D006416 5.9e-138 494.6 327 71.3
MD14G1122800 Malus domestica HOM05D005266 ORTHO05D006416 1.0e-137 493.8 327 70.0
Lj8A209T47 Lonicera japonica HOM05D005266 ORTHO05D006416 3.8e-137 491.9 349 66.5
Glyma.11G018300 Glycine max HOM05D005266 ORTHO05D006416 6.5e-137 491.1 327 71.3
PGR031G3352 Punica granatum HOM05D005266 ORTHO05D006416 1.1e-136 490.3 324 71.0
TWI60G1723 Tripterygium wilfordii HOM05D005266 ORTHO05D006416 4.2e-136 488.4 326 70.2
CiPaw.12G084500 Carya illinoinensis HOM05D005266 ORTHO05D006416 9.4e-136 487.3 327 70.9
Glyma.01G224700 Glycine max HOM05D005266 ORTHO05D006416 9.4e-136 487.3 327 70.6
FvH4_5g04211 Fragaria vesca HOM05D005266 ORTHO05D006416 1.6e-135 486.5 327 69.1
Sabra03G0099600 Salix brachista HOM05D005266 ORTHO05D006416 3.6e-135 485.3 326 69.9
Gohir.D12G236400 Gossypium hirsutum HOM05D005266 ORTHO05D006416 1.4e-134 483.4 325 70.5
FAN04G0732 Fragaria x ananassa HOM05D005266 ORTHO05D006416 2.3e-134 482.6 326 69.0
Gohir.A12G235200 Gossypium hirsutum HOM05D005266 ORTHO05D006416 2.3e-134 482.6 325 71.1
Potri.003G138300 Populus trichocarpa HOM05D005266 ORTHO05D006416 3.0e-134 482.3 326 70.6
Gorai.008G253100 Gossypium raimondii HOM05D005266 ORTHO05D006416 4.0e-134 481.9 325 70.2
LjContig00312_ERROPOS870357g0017789 Lotus japonicus HOM05D005266 ORTHO05D006416 2.6e-133 479.2 327 70.3
AUR62010819 Chenopodium quinoa HOM05D005266 ORTHO05D006416 5.7e-133 478.0 327 70.6
Phvul.002G163300 Phaseolus vulgaris HOM05D005266 ORTHO05D006416 5.7e-133 478.0 327 69.7
Aqoxy5G04165 Aquilegia oxysepala HOM05D005266 ORTHO05D006416 1.7e-132 476.5 325 68.0
VMungo1215G3249 Vigna mungo HOM05D005266 ORTHO05D006416 1.7e-132 476.5 327 70.0
AL2G10520 Arabidopsis lyrata HOM05D005266 ORTHO05D006416 6.3e-132 474.6 323 67.8
Lsat_1_v5_gn_6_84320 Lactuca sativa HOM05D005266 ORTHO05D006416 1.1e-131 473.8 324 66.4
AT1G64350 Arabidopsis thaliana HOM05D005266 ORTHO05D006416 1.8e-131 473.0 323 67.8
Eucgr.D01715 Eucalyptus grandis HOM05D005266 ORTHO05D006416 4.1e-131 471.9 324 68.5
Carub.0002s0044 Capsella rubella HOM05D005266 ORTHO05D006416 5.3e-131 471.5 325 67.7
Cpa.g.sc79.62 Carica papaya HOM05D005266 ORTHO05D006416 1.2e-130 470.3 325 67.1
SGA_v2.0_scaffold305G47940 Striga asiatica HOM05D005266 ORTHO05D006416 1.6e-130 469.9 369 62.3
Ah.12g052360 Amaranthus hybridus HOM05D005266 ORTHO05D006416 4.5e-130 468.4 326 68.4
PSO384G5109 Papaver somniferum HOM05D005266 ORTHO05D006416 5.9e-130 468.0 325 68.0
HanXRQChr11g0348461 Helianthus annuus HOM05D005266 ORTHO05D006416 2.9e-129 465.7 326 66.6
PSO135G0479 Papaver somniferum HOM05D005266 ORTHO05D006416 2.9e-129 465.7 325 67.1
Sed0003958 Sechium edule HOM05D005266 ORTHO05D006416 2.9e-129 465.7 328 66.5
THA.LOC104823610 Tarenaya hassleriana HOM05D005266 ORTHO05D006416 5.0e-129 464.9 328 66.5
A09p14760 Brassica napus HOM05D005266 ORTHO05D006416 1.9e-128 463.0 323 67.5
HanXRQChr03g0085181 Helianthus annuus HOM05D005266 ORTHO05D006416 2.5e-128 462.6 326 65.0
Psat1g124400 Pisum sativum HOM05D005266 ORTHO05D006416 3.2e-128 462.2 327 68.2
BcaB07g31457 Brassica carinata HOM05D005266 ORTHO05D006416 4.2e-128 461.8 322 67.4
ClCG07G014940 Citrullus lanatus HOM05D005266 ORTHO05D006416 5.5e-128 461.5 328 66.5
C09p17870 Brassica napus HOM05D005266 ORTHO05D006416 7.2e-128 461.1 324 67.0
BolC9t54684H Brassica oleracea HOM05D005266 ORTHO05D006416 7.2e-128 461.1 324 67.0
CARHR046620 Cardamine hirsuta HOM05D005266 ORTHO05D006416 1.2e-127 460.3 328 64.9
Dinv38851 Davidia involucrata HOM05D005266 ORTHO05D006416 1.2e-127 460.3 280 76.1
BcaC04g22562 Brassica carinata HOM05D005266 ORTHO05D006416 2.1e-127 459.5 324 66.7
TPR.G31703 Trifolium pratense HOM05D005266 ORTHO05D006416 2.1e-127 459.5 329 67.8
ECA240G2034 Erigeron canadensis HOM05D005266 ORTHO05D006416 2.7e-127 459.1 328 66.8
arahy.Tifrunner.gnm1.ann1.B1IHLW Arachis hypogaea HOM05D005266 ORTHO05D006416 3.6e-127 458.8 327 66.4
BraA09t37122Z Brassica rapa HOM05D005266 ORTHO05D006416 3.6e-127 458.8 322 67.7
Medtr6g072020 Medicago truncatula HOM05D005266 ORTHO05D006416 8.0e-127 457.6 329 66.6
TAR307G0004 Trochodendron aralioides HOM05D005266 ORTHO05D006416 8.0e-127 457.6 326 66.9
arahy.Tifrunner.gnm1.ann1.J0IMEJ Arachis hypogaea HOM05D005266 ORTHO05D006416 2.3e-126 456.1 327 66.1
MELO3C016280.2 Cucumis melo HOM05D005266 ORTHO05D006416 3.0e-126 455.7 328 65.2
CsaV3_4G006470 Cucumis sativus L. HOM05D005266 ORTHO05D006416 3.0e-126 455.7 328 65.5
Hund14232 Selenicereus undatus HOM05D005266 ORTHO05D006416 4.0e-126 455.3 327 66.7
Haze_08644 Corylus avellana HOM05D005266 ORTHO05D006416 6.8e-126 454.5 337 65.6
Thhalv10023589m.g Eutrema salsugineum HOM05D005266 ORTHO05D006416 1.2e-125 453.8 325 65.8
MBI06_g35286_MAGBIO Magnolia biondii HOM05D005266 ORTHO05D006416 1.2e-125 453.8 322 66.8
Lalb_Chr05g0211611 Lupinus albus HOM05D005266 ORTHO05D006416 9.8e-125 450.7 327 66.4
Sp2g00410 Schrenkiella parvula HOM05D005266 ORTHO05D006416 1.7e-124 449.9 326 64.7
Aa31LG2G1320 Aethionema arabicum HOM05D005266 ORTHO05D006416 2.0e-122 443.0 324 64.8
Ca_20295_v3 Cicer arietinum L. HOM05D005266 ORTHO05D006416 8.6e-121 437.6 327 64.8
Nn1g01825 Nelumbo nucifera HOM05D005266 ORTHO05D006416 1.6e-114 416.8 283 68.9
AUR62019818 Chenopodium quinoa HOM05D005266 ORTHO05D006416 2.7e-114 416.0 277 72.2
Zm00001eb159590 Zea mays HOM05D005266 ORTHO05D006416 2.7e-114 416.0 321 57.6
Os01g0620100 Oryza sativa ssp. japonica HOM05D005266 ORTHO05D006416 4.5e-114 415.2 321 58.3
FAN08G1599 Fragaria x ananassa HOM05D005266 ORTHO05D006416 5.6e-112 408.3 284 67.6
DCAR_027714 Daucus carota HOM05D005266 ORTHO05D006416 9.5e-112 407.5 275 70.2
FAN13G2918 Fragaria x ananassa HOM05D005266 ORTHO05D006416 1.6e-111 406.8 284 67.3
FAN18G4151 Fragaria x ananassa HOM05D005266 ORTHO05D006416 1.6e-111 406.8 284 67.3
Sc01g0010180 Simmondsia chinensis HOM05D005266 ORTHO05D006416 2.0e-109 399.8 283 65.4
Nn3g19065 Nelumbo nucifera HOM05D005266 ORTHO05D006416 5.4e-107 391.7 326 58.0
EL10Ac5g12895 Beta vulgaris HOM05D005266 ORTHO05D006416 7.8e-106 387.9 275 67.6
SEGI_13107 Sequoiadendron giganteum HOM05D005266 ORTHO05D006416 1.5e-104 383.6 326 53.7
CDE02G0379 Ceratophyllum demersum HOM05D005266 ORTHO05D006416 1.8e-94 350.1 223 71.7
HPP92_004677 Vanilla planifolia HOM05D005266 ORTHO05D006416 4.0e-94 349.0 322 52.8
Oeu061096.1 Olea europaea HOM05D005266 ORTHO05D000397 7.1e-91 338.2 200 77.0
TAR375G1085 Trochodendron aralioides HOM05D005266 ORTHO05D006416 2.7e-90 336.3 202 78.2
MD14G1133100 Malus domestica HOM05D005266 ORTHO05D006416 1.9e-88 330.1 306 56.2
unitig_899.g15005 Utricularia gibba HOM05D005266 ORTHO05D006416 2.4e-86 323.2 329 48.9
Mapoly0117s0010 Marchantia polymorpha HOM05D005266 ORTHO05D006416 4.6e-82 308.9 320 45.9
ATR0589G095 Amborella trichopoda HOM05D005266 ORTHO05D006416 1.9e-80 303.5 201 68.7
AagrBONN_evm.TU.Sc2ySwM_344.5454 Anthoceros agrestis HOM05D005266 ORTHO05D006416 3.5e-74 282.7 315 42.2
Pp3c5_28960 Physcomitrium patens HOM05D005266 ORTHO05D006416 3.0e-73 279.6 319 41.1
SMO147G0195 Selaginella moellendorffii HOM05D005266 ORTHO05D006416 1.1e-72 277.7 317 44.5
MD15G1317600 Malus domestica HOM05D005266 ORTHO05D006416 7.6e-53 211.8 170 60.6
Thhalv10023957m.g Eutrema salsugineum HOM05D005266 ORTHO05D006416 2.1e-50 203.8 158 61.4
MD06G1116200 Malus domestica HOM05D005266 ORTHO05D006416 1.0e-49 201.4 202 53.0
HanXRQChr03g0066311 Helianthus annuus HOM05D005266 ORTHO05D006416 3.6e-42 176.4 158 57.0
ATR0589G038 Amborella trichopoda HOM05D005266 ORTHO05D006416 5.5e-35 152.5 124 54.0
MD17G1262800 Malus domestica HOM05D005266 ORTHO05D006416 5.5e-35 152.5 110 62.7
TPR.G25301 Trifolium pratense HOM05D005266 ORTHO05D006416 7.7e-29 132.1 115 57.4
TAR303G0001 Trochodendron aralioides HOM05D005266 ORTHO05D003403 1.9e-27 127.5 78 79.5
CBR_g26176 Chara braunii HOM05D005266 ORTHO05D006416 1.2e-26 124.8 162 35.2
CSS0028893 Camellia sinensis var. sinensis HOM05D005266 ORTHO05D006416 3.9e-25 119.8 74 75.7
Thecc.02G222700 Theobroma cacao HOM05D005266 ORTHO05D006416 1.5e-19 101.3 175 34.3
TPR.G25299 Trifolium pratense HOM05D005266 ORTHO05D006416 7.2e-19 99.0 147 42.9
CDE08G0252 Ceratophyllum demersum HOM05D005266 ORTHO05D006416 6.1e-18 95.9 95 43.2
MCO05G347 Micromonas commoda HOM05D005266 ORTHO05D006416 6.1e-18 95.9 354 23.2
FAN05G0040 Fragaria x ananassa HOM05D002410 ORTHO05D002805 8.0e-18 95.5 310 25.5
Thecc.02G199200 Theobroma cacao HOM05D005266 ORTHO05D006416 6.7e-17 92.4 186 33.3
Hund07659 Selenicereus undatus HOM05D005266 ORTHO05D006416 3.3e-16 90.1 176 33.5
FAN13G3269 Fragaria x ananassa HOM05D000100 ORTHO05D000052 5.7e-16 89.4 70 60.0
FAN18G1945 Fragaria x ananassa HOM05D005266 ORTHO05D006416 1.3e-15 88.2 70 61.4
Cre03.g192000 Chlamydomonas reinhardtii HOM05D005266 ORTHO05D006416 2.2e-15 87.4 332 24.7
Hund08759 Selenicereus undatus HOM05D005266 ORTHO05D006416 1.6e-13 81.3 215 28.8
Rhsim03G0018500 Rhododendron simsii HOM05D005266 ORTHO05D006416 1.7e-12 77.8 37 86.5
PRCOL_00003916 Prasinoderma coloniale HOM05D001416 ORTHO05D002549 1.9e-11 74.3 307 25.4
SMO364G0742 Selaginella moellendorffii HOM05D002410 ORTHO05D002805 2.5e-11 73.9 322 23.0
PGSC0003DMG400002531 Solanum tuberosum HOM05D002410 ORTHO05D002805 7.2e-11 72.4 319 24.5
Thecc.03G165000 Theobroma cacao HOM05D005266 ORTHO05D006416 7.2e-11 72.4 50 64.0
Sed0010476 Sechium edule HOM05D002410 ORTHO05D002805 1.2e-10 71.6 303 22.1
Solyc03g120900.3 Solanum lycopersicum HOM05D002410 ORTHO05D002805 1.2e-10 71.6 318 23.9
Nitab4.5_0007527g0030 Nicotiana tabacum HOM05D002410 ORTHO05D002805 3.6e-10 70.1 318 21.4
Sopen03g039730 Solanum pennellii HOM05D002410 ORTHO05D002805 3.6e-10 70.1 302 23.8
Nitab4.5_0001755g0140 Nicotiana tabacum HOM05D002410 ORTHO05D002805 4.7e-10 69.7 317 22.1
Rhsim10G0147400 Rhododendron simsii HOM05D005266 ORTHO05D006416 1.0e-09 68.6 67 49.3
MBI01_g28590_MAGBIO Magnolia biondii HOM05D005266 ORTHO05D006416 1.4e-09 68.2 41 73.2
SMO164G0071 Selaginella moellendorffii HOM05D002410 ORTHO05D002805 4.0e-09 66.6 304 22.7
Atru.chr1.3501 Acer truncatum HOM05D002410 ORTHO05D002805 6.8e-09 65.9 335 19.7
MBI01_g05788_MAGBIO Magnolia biondii HOM05D005266 ORTHO05D006416 6.8e-09 65.9 40 72.5
Peaxi162Scf00038g00920 Petunia axillaris HOM05D002410 ORTHO05D002805 1.2e-08 65.1 300 22.3
Hund08403 Selenicereus undatus HOM05D006468 ORTHO05D006908 1.5e-08 64.7 46 63.0
Cfa026486 Carpinus fangiana HOM05D002410 ORTHO05D002805 4.4e-08 63.2 320 22.8
CSS0000524 Camellia sinensis var. sinensis HOM05D002410 ORTHO05D002805 3.7e-07 60.1 126 28.6
CSS0034511 Camellia sinensis var. sinensis HOM05D002410 ORTHO05D002805 3.7e-07 60.1 126 28.6
TPR.G32052 Trifolium pratense HOM05D000002 ORTHO05D000001 3.7e-07 60.1 149 28.9
ECA248G0849 Erigeron canadensis HOM05D002410 ORTHO05D002805 6.3e-07 59.3 121 29.8
Hund00690 Selenicereus undatus HOM05D002410 ORTHO05D002805 1.8e-06 57.8 306 19.6
SEGI_30206 Sequoiadendron giganteum HOM05D002410 ORTHO05D002805 2.4e-06 57.4 260 22.3


User provided reference genes

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