Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0006994g0060 Nicotiana tabacum HOM05D002268 ORTHO05D006937 3.4e-291 1004.2 489 100.0
Nitab4.5_0005819g0070 Nicotiana tabacum HOM05D002268 ORTHO05D006937 1.9e-273 945.3 478 96.2
Solyc09g074100.4 Solanum lycopersicum HOM05D002268 ORTHO05D006937 1.2e-264 916.0 489 90.6
CAN.G956.10 Capsicum annuum HOM05D002268 ORTHO05D006937 2.3e-263 911.8 493 89.9
PGSC0003DMG400003844 Solanum tuberosum HOM05D002268 ORTHO05D006937 2.3e-263 911.8 484 90.9
Sopen09g028920 Solanum pennellii HOM05D002268 ORTHO05D006937 5.7e-262 907.1 489 89.8
QL01p004788 Quercus lobata HOM05D002268 ORTHO05D006937 3.6e-216 755.0 440 80.9
Rhsim01G0191500 Rhododendron simsii HOM05D002268 ORTHO05D006937 6.2e-216 754.2 484 76.4
CsaV3_4G024220 Cucumis sativus L. HOM05D002268 ORTHO05D006937 8.9e-215 750.4 454 79.5
Cpa.g.sc84.62 Carica papaya HOM05D002268 ORTHO05D006937 7.6e-214 747.3 411 84.7
GSVIVG01025274001 Vitis vinifera HOM05D002268 ORTHO05D006937 9.9e-214 746.9 411 85.6
Lj2A631G13 Lonicera japonica HOM05D002268 ORTHO05D006937 1.3e-213 746.5 509 72.7
Ca_11284_v3 Cicer arietinum L. HOM05D002268 ORTHO05D006937 2.2e-213 745.7 459 78.0
Ca_30227_v3 Cicer arietinum L. HOM05D002268 ORTHO05D006937 2.2e-213 745.7 459 78.0
Cc09_g04150 Coffea canephora HOM05D002268 ORTHO05D006937 2.9e-213 745.3 415 83.9
COL.COLO4_24897 Corchorus olitorius HOM05D002268 ORTHO05D006937 6.4e-213 744.2 431 80.5
Haze_23130 Corylus avellana HOM05D002268 ORTHO05D006937 8.4e-213 743.8 482 75.3
Atru.chr3.2733 Acer truncatum HOM05D002268 ORTHO05D006937 1.4e-212 743.0 487 76.2
MELO3C014598.2 Cucumis melo HOM05D002268 ORTHO05D006937 1.4e-212 743.0 454 78.4
Sed0017829 Sechium edule HOM05D002268 ORTHO05D006937 3.2e-212 741.9 472 77.1
Lalb_Chr19g0138111 Lupinus albus HOM05D002268 ORTHO05D006937 1.6e-211 739.6 484 74.6
Glyma.11G133500 Glycine max HOM05D002268 ORTHO05D006937 3.5e-211 738.4 478 75.1
CiPaw.14G119300 Carya illinoinensis HOM05D002268 ORTHO05D006937 4.6e-211 738.0 491 73.5
Hma1.2p1_0861F.1_g229700 Hydrangea macrophylla HOM05D002268 ORTHO05D006937 4.6e-211 738.0 470 76.4
arahy.Tifrunner.gnm1.ann1.8VL3CN Arachis hypogaea HOM05D002268 ORTHO05D006937 6.0e-211 737.6 416 83.7
TWI60G0297 Tripterygium wilfordii HOM05D002268 ORTHO05D006937 1.0e-210 736.9 454 78.2
arahy.Tifrunner.gnm1.ann1.02894U Arachis hypogaea HOM05D002268 ORTHO05D006937 1.7e-210 736.1 416 82.7
vmacro19340 Vaccinium macrocarpon HOM05D002268 ORTHO05D006937 3.9e-210 734.9 484 73.6
Lj3g0006923 Lotus japonicus HOM05D002268 ORTHO05D006937 8.7e-210 733.8 411 83.2
arahy.Tifrunner.gnm1.ann1.6XYC84 Arachis hypogaea HOM05D002268 ORTHO05D006937 1.1e-209 733.4 424 82.3
PGR102G0832 Punica granatum HOM05D002268 ORTHO05D006937 3.3e-209 731.9 472 74.6
Duzib168G2040 Durio zibethinus HOM05D002268 ORTHO05D006937 4.3e-209 731.5 433 79.2
Psat7g212760 Pisum sativum HOM05D002268 ORTHO05D006937 4.3e-209 731.5 459 76.9
Prupe.5G028600 Prunus persica HOM05D002268 ORTHO05D006937 4.3e-209 731.5 479 75.8
arahy.Tifrunner.gnm1.ann1.VSBS4R Arachis hypogaea HOM05D002268 ORTHO05D006937 5.6e-209 731.1 416 82.9
Oeu043297.4 Olea europaea HOM05D002268 ORTHO05D006937 7.3e-209 730.7 500 73.2
arahy.Tifrunner.gnm1.ann1.AYE0CN Arachis hypogaea HOM05D002268 ORTHO05D006937 2.1e-208 729.2 416 82.2
Phvul.011G059600 Phaseolus vulgaris HOM05D002268 ORTHO05D006937 8.1e-208 727.2 411 82.5
Eucgr.B03681 Eucalyptus grandis HOM05D002268 ORTHO05D006937 1.8e-207 726.1 400 85.8
Gorai.009G073000 Gossypium raimondii HOM05D002268 ORTHO05D006937 1.8e-207 726.1 482 72.4
ClCG02G023280 Citrullus lanatus HOM05D002268 ORTHO05D006937 2.4e-207 725.7 469 75.3
MD03G1176400 Malus domestica HOM05D002268 ORTHO05D006937 3.1e-207 725.3 482 75.1
Potri.001G259000 Populus trichocarpa HOM05D002268 ORTHO05D006937 3.1e-207 725.3 493 72.4
HanXRQChr07g0197481 Helianthus annuus HOM05D002268 ORTHO05D006937 6.9e-207 724.2 489 72.2
DCAR_000723 Daucus carota HOM05D002268 ORTHO05D006937 9.0e-207 723.8 482 74.3
Ah.04g161910 Amaranthus hybridus HOM05D002268 ORTHO05D006937 5.8e-206 721.1 490 73.9
VMungo1127G0743 Vigna mungo HOM05D002268 ORTHO05D006937 5.8e-206 721.1 457 76.1
Sc16g0011510 Simmondsia chinensis HOM05D002268 ORTHO05D006937 7.6e-206 720.7 408 83.3
AUR62019294 Chenopodium quinoa HOM05D002268 ORTHO05D006937 2.2e-205 719.2 403 83.4
Migut.N02313 Erythranthe guttata HOM05D002268 ORTHO05D006937 2.9e-205 718.8 423 81.1
MD11G1196700 Malus domestica HOM05D002268 ORTHO05D006937 8.4e-205 717.2 487 73.9
Gohir.D05G072000 Gossypium hirsutum HOM05D002268 ORTHO05D006937 1.4e-204 716.5 482 71.2
Medtr4g065023 Medicago truncatula HOM05D002268 ORTHO05D006937 1.4e-204 716.5 460 75.2
Nn7g36125 Nelumbo nucifera HOM05D002268 ORTHO05D006937 1.9e-204 716.1 486 72.2
SalBow5G0100 Salvia bowleyana HOM05D002268 ORTHO05D006937 2.4e-204 715.7 481 72.6
EL10Ac4g10259 Beta vulgaris HOM05D002268 ORTHO05D006937 1.7e-202 709.5 492 73.4
EL10Ac4g10275 Beta vulgaris HOM05D002268 ORTHO05D006937 3.0e-202 708.8 492 73.4
Lsat_1_v5_gn_2_97721 Lactuca sativa HOM05D002268 ORTHO05D006937 5.6e-201 704.5 490 70.8
AT1G51310 Arabidopsis thaliana HOM05D002268 ORTHO05D006937 4.8e-200 701.4 412 79.4
Sp1g37990 Schrenkiella parvula HOM05D002268 ORTHO05D006937 4.8e-200 701.4 412 79.6
Actinidia06337 Actinidia chinensis HOM05D002268 ORTHO05D006937 6.2e-200 701.0 468 73.3
BcaB02g11231 Brassica carinata HOM05D002268 ORTHO05D006937 1.1e-199 700.3 409 79.2
Aa31LG10G3500 Aethionema arabicum HOM05D002268 ORTHO05D006937 2.4e-199 699.1 485 70.5
Carub.0008s0647 Capsella rubella HOM05D002268 ORTHO05D006937 3.1e-199 698.7 412 79.4
Thhalv10011432m.g Eutrema salsugineum HOM05D002268 ORTHO05D006937 3.1e-199 698.7 410 79.8
CARHR041380 Cardamine hirsuta HOM05D002268 ORTHO05D006937 6.9e-199 697.6 412 78.9
AL1G59110 Arabidopsis lyrata HOM05D002268 ORTHO05D006937 9.0e-199 697.2 409 79.5
Carub.0001s4017 Capsella rubella HOM05D002268 ORTHO05D006937 9.0e-199 697.2 412 79.1
ECA238G2081 Erigeron canadensis HOM05D002268 ORTHO05D006937 1.5e-198 696.4 504 67.9
Aqoxy1G00300 Aquilegia oxysepala HOM05D002268 ORTHO05D006937 1.7e-197 693.0 509 68.8
BraA08t32327Z Brassica rapa HOM05D002268 ORTHO05D006937 2.2e-197 692.6 470 72.3
A08p02940 Brassica napus HOM05D002268 ORTHO05D006937 4.9e-197 691.4 472 72.0
TPR.G35035 Trifolium pratense HOM05D002268 ORTHO05D006937 2.1e-195 686.0 428 77.3
PSO384G3396 Papaver somniferum HOM05D002268 ORTHO05D006937 2.7e-195 685.6 486 69.5
BcaC01g01260 Brassica carinata HOM05D002268 ORTHO05D006937 4.6e-195 684.9 466 71.0
FAN18G3947 Fragaria x ananassa HOM05D002268 ORTHO05D006937 7.9e-195 684.1 486 71.2
C03p89920 Brassica napus HOM05D002268 ORTHO05D006937 1.3e-194 683.3 466 71.0
BolC3t21311H Brassica oleracea HOM05D002268 ORTHO05D006937 1.3e-194 683.3 466 71.0
FvH4_5g33050 Fragaria vesca HOM05D002268 ORTHO05D006937 6.7e-194 681.0 484 69.6
HPP92_009580 Vanilla planifolia HOM05D002268 ORTHO05D006937 4.3e-193 678.3 429 73.2
RcHm_v2.0_Chr7g0231131 Rosa chinensis HOM05D002268 ORTHO05D006937 5.6e-193 677.9 484 71.3
PSO339G2995 Papaver somniferum HOM05D002268 ORTHO05D006937 9.6e-193 677.2 486 69.1
AUR62000114 Chenopodium quinoa HOM05D002268 ORTHO05D006937 2.4e-191 672.5 445 73.7
Sabra16G0158600 Salix brachista HOM05D002268 ORTHO05D006937 1.7e-189 666.4 487 67.4
CSS0013347 Camellia sinensis var. sinensis HOM05D002268 ORTHO05D006937 2.9e-189 665.6 362 85.6
Manes.06G165000 Manihot esculenta HOM05D002268 ORTHO05D006937 3.8e-189 665.2 415 76.1
SGA_v2.0_scaffold42G16104 Striga asiatica HOM05D002268 ORTHO05D006937 6.5e-189 664.5 480 67.1
Os03g0174600 Oryza sativa ssp. japonica HOM05D002268 ORTHO05D006937 2.1e-187 659.4 449 69.9
ATR0605G089 Amborella trichopoda HOM05D002268 ORTHO05D006937 2.3e-186 656.0 400 76.8
A05p19700 Brassica napus HOM05D002268 ORTHO05D006937 8.7e-186 654.1 432 73.4
Zm00001eb005670 Zea mays HOM05D002268 ORTHO05D006937 4.3e-185 651.7 491 64.0
MBI04_g17077_MAGBIO Magnolia biondii HOM05D002268 ORTHO05D006937 9.6e-185 650.6 490 65.9
BcaC05g27353 Brassica carinata HOM05D002268 ORTHO05D006937 1.6e-171 606.7 361 77.0
Hund22033 Selenicereus undatus HOM05D002268 ORTHO05D006937 5.1e-170 601.7 628 55.6
CDE04G2511 Ceratophyllum demersum HOM05D002268 ORTHO05D006937 2.0e-169 599.7 458 65.5
Thecc.09G232700 Theobroma cacao HOM05D002268 ORTHO05D006937 5.0e-165 585.1 394 72.1
Lsat_1_v5_gn_2_132680 Lactuca sativa HOM05D002268 ORTHO05D006937 6.5e-165 584.7 401 69.8
BolC5t32017H Brassica oleracea HOM05D002268 ORTHO05D006937 1.9e-164 583.2 499 60.1
CSS0030827 Camellia sinensis var. sinensis HOM05D002268 ORTHO05D006937 5.1e-162 575.1 434 67.1
C05p32860 Brassica napus HOM05D002268 ORTHO05D006937 1.5e-153 547.0 478 59.4
Peaxi162Scf00004g00224 Petunia axillaris HOM05D002268 ORTHO05D006937 7.0e-143 511.5 257 95.3
Pp3c15_1840 Physcomitrium patens HOM05D002268 ORTHO05D006937 2.9e-141 506.1 378 65.1
Ciclev10006706m.g Citrus clementina HOM05D002268 ORTHO05D006937 3.8e-141 505.8 494 56.9
Hma1.2p1_0861F.1_g229710 Hydrangea macrophylla HOM05D002268 ORTHO05D006937 1.2e-139 500.7 273 86.1
Dinv22182 Davidia involucrata HOM05D002268 ORTHO05D006937 3.6e-139 499.2 260 88.8
SMO331G0070 Selaginella moellendorffii HOM05D002268 ORTHO05D006937 8.8e-138 494.6 379 62.5
SEGI_13867 Sequoiadendron giganteum HOM05D002268 ORTHO05D006937 8.8e-138 494.6 344 66.3
Mapoly0129s0019 Marchantia polymorpha HOM05D002268 ORTHO05D006937 5.4e-135 485.3 406 58.1
AagrBONN_evm.TU.Sc2ySwM_340.361 Anthoceros agrestis HOM05D002268 ORTHO05D006937 1.6e-134 483.8 407 58.0
TAR369G0718 Trochodendron aralioides HOM05D002268 ORTHO05D006937 7.0e-127 458.4 263 81.7
Glyma.12G057700 Glycine max HOM05D002268 ORTHO05D006937 1.2e-126 457.6 299 73.2
FAN08G3580 Fragaria x ananassa HOM05D002268 ORTHO05D006937 7.3e-124 448.4 339 65.8
MCO02G416 Micromonas commoda HOM05D002268 ORTHO05D006937 1.6e-118 430.6 434 51.8
FAN04G1610 Fragaria x ananassa HOM05D002268 ORTHO05D006937 2.8e-115 419.9 344 62.5
PRCOL_00001138 Prasinoderma coloniale HOM05D002268 ORTHO05D006937 6.2e-115 418.7 381 55.1
Actinidia26439 Actinidia chinensis HOM05D002268 ORTHO05D006937 4.4e-105 386.0 235 77.0
AagrBONN_evm.TU.Sc2ySwM_368.606 Anthoceros agrestis HOM05D002268 ORTHO05D006937 1.1e-103 381.3 369 52.0
Cre14.g628000 Chlamydomonas reinhardtii HOM05D002268 ORTHO05D006937 6.8e-98 362.1 528 39.6
CBR_g40742 Chara braunii HOM05D002268 ORTHO05D006937 1.3e-93 347.8 432 45.6
Gohir.A05G069100 Gossypium hirsutum HOM05D002268 ORTHO05D006937 1.4e-90 337.8 277 62.1
unitig_21.g20901 Utricularia gibba HOM05D002268 ORTHO05D006937 9.0e-74 282.0 165 78.2
unitig_21.g20902 Utricularia gibba HOM05D002268 ORTHO05D007950 4.5e-73 279.6 188 70.2
BcaB04g17220 Brassica carinata HOM05D002268 ORTHO05D006937 1.3e-69 268.1 174 71.3
Hma1.2p1_0861F.1_g229720 Hydrangea macrophylla HOM05D002268 ORTHO05D006937 6.3e-59 232.6 138 76.8
MSTRG.17590 Avicennia marina HOM05D002268 ORTHO05D006937 1.1e-58 231.9 208 59.6
BcaC01g01262 Brassica carinata HOM05D002268 ORTHO05D006937 7.4e-52 209.1 288 42.0
C03p89950 Brassica napus HOM05D002268 ORTHO05D001336 9.7e-52 208.8 183 57.4
CBR_g19922 Chara braunii HOM05D002268 ORTHO05D021278 8.2e-51 205.7 310 36.8
AagrBONN_evm.TU.Sc2ySwM_117.3752 Anthoceros agrestis HOM05D002268 ORTHO05D021278 3.1e-50 203.8 336 34.8
Pp3c4_6690 Physcomitrium patens HOM05D002268 ORTHO05D021278 3.4e-49 200.3 396 31.6
BolC3t21314H Brassica oleracea HOM05D002268 ORTHO05D006937 4.2e-47 193.4 183 54.1
CSS0037797 Camellia sinensis var. sinensis HOM05D002268 ORTHO05D006937 8.8e-45 185.7 115 73.9
Mapoly0010s0199 Marchantia polymorpha HOM05D002268 ORTHO05D021278 7.0e-42 176.0 387 31.5
MCO12G105 Micromonas commoda HOM05D002268 ORTHO05D021278 1.2e-41 175.3 349 35.2
SEGI_07269 Sequoiadendron giganteum HOM05D002268 ORTHO05D006937 2.6e-41 174.1 115 69.6
PRCOL_00001597 Prasinoderma coloniale HOM05D002268 ORTHO05D021278 8.5e-40 169.1 399 30.8
BraA05t20874Z Brassica rapa HOM05D002268 ORTHO05D006937 4.0e-37 160.2 144 61.1
Lsat_1_v5_gn_1_117501 Lactuca sativa HOM05D002268 ORTHO05D006937 9.1e-34 149.1 74 85.1
MELO3C029180.2 Cucumis melo HOM05D002268 ORTHO05D168145 1.4e-26 125.2 255 36.9
C03p89940 Brassica napus HOM05D002268 ORTHO05D040778 7.0e-26 122.9 117 56.4
Nn3g21873 Nelumbo nucifera HOM05D002268 ORTHO05D006937 5.0e-24 116.7 91 64.8
BolC3t21313H Brassica oleracea HOM05D002268 ORTHO05D040778 6.5e-24 116.3 113 55.8
SEGI_39418 Sequoiadendron giganteum HOM05D002268 ORTHO05D006937 5.2e-21 106.7 101 49.5
A08p02920 Brassica napus HOM05D002268 ORTHO05D099342 1.6e-17 95.1 98 51.0
Duzib150G1137 Durio zibethinus HOM05D002268 ORTHO05D006937 1.6e-14 85.1 118 49.2
MELO3C032733.2 Cucumis melo HOM05D002268 ORTHO05D170637 1.2e-12 79.0 218 30.7
MELO3C035704.2 Cucumis melo HOM05D002268 ORTHO05D166817 4.1e-10 70.5 146 32.2
QL06p040831 Quercus lobata HOM05D002268 ORTHO05D006937 8.6e-08 62.8 31 83.9
Actinidia23968 Actinidia chinensis HOM05D002268 ORTHO05D006937 1.9e-07 61.6 33 93.9
BolC2t12207H Brassica oleracea HOM05D002268 ORTHO05D042165 4.7e-06 57.0 141 32.6


User provided reference genes

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