Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0006967g0030 Nicotiana tabacum HOM05D005837 ORTHO05D007594 4.6e-161 571.2 305 100.0
Nitab4.5_0000715g0030 Nicotiana tabacum HOM05D005837 ORTHO05D007594 2.0e-156 555.8 318 94.3
Peaxi162Scf00295g01018 Petunia axillaris HOM05D005837 ORTHO05D007594 1.4e-146 523.1 308 92.5
PGSC0003DMG400007222 Solanum tuberosum HOM05D005837 ORTHO05D007594 8.8e-144 513.8 333 86.2
Solyc05g051590.3 Solanum lycopersicum HOM05D005837 ORTHO05D007594 1.5e-143 513.1 333 85.9
Sopen05g030040 Solanum pennellii HOM05D005837 ORTHO05D007594 2.6e-143 512.3 333 85.9
GSVIVG01002467001 Vitis vinifera HOM05D005837 ORTHO05D007594 6.3e-126 454.5 313 77.6
QL06p049517 Quercus lobata HOM05D005837 ORTHO05D007594 1.1e-125 453.8 324 73.5
Gohir.D11G055600 Gossypium hirsutum HOM05D005837 ORTHO05D007594 3.1e-125 452.2 324 73.5
Rhsim08G0010400 Rhododendron simsii HOM05D005837 ORTHO05D007594 4.1e-125 451.8 326 74.2
SGA_v2.0_scaffold34G13592 Striga asiatica HOM05D005837 ORTHO05D007594 5.4e-125 451.4 311 78.1
Gorai.007G060800 Gossypium raimondii HOM05D005837 ORTHO05D007594 9.1e-125 450.7 324 72.8
Hma1.2p1_0047F.1_g027810 Hydrangea macrophylla HOM05D005837 ORTHO05D007594 9.1e-125 450.7 325 75.1
Duzib264G0353 Durio zibethinus HOM05D005837 ORTHO05D007594 1.6e-124 449.9 323 74.0
Migut.L00122 Erythranthe guttata HOM05D005837 ORTHO05D007594 3.5e-124 448.7 333 75.4
Thecc.01G101500 Theobroma cacao HOM05D005837 ORTHO05D007594 4.5e-124 448.4 309 77.3
Duzib147G0987 Durio zibethinus HOM05D005837 ORTHO05D007594 1.0e-123 447.2 326 73.9
TAR376G0564 Trochodendron aralioides HOM05D005837 ORTHO05D007594 1.0e-123 447.2 326 73.6
MSTRG.15711 Avicennia marina HOM05D005837 ORTHO05D007594 1.3e-123 446.8 328 75.6
Gorai.007G238700 Gossypium raimondii HOM05D005837 ORTHO05D007594 2.2e-123 446.0 325 73.2
Gohir.D11G221614 Gossypium hirsutum HOM05D005837 ORTHO05D007594 5.0e-123 444.9 325 72.9
Potri.005G075600 Populus trichocarpa HOM05D005837 ORTHO05D007594 2.5e-122 442.6 312 75.3
HanXRQChr10g0305351 Helianthus annuus HOM05D005837 ORTHO05D007594 3.2e-122 442.2 322 73.9
MD01G1029800 Malus domestica HOM05D005837 ORTHO05D007594 4.2e-122 441.8 316 73.7
Gohir.A11G201400 Gossypium hirsutum HOM05D005837 ORTHO05D007594 9.5e-122 440.7 325 72.0
TWI53G1711 Tripterygium wilfordii HOM05D005837 ORTHO05D007594 9.5e-122 440.7 316 74.4
Nn5g30122 Nelumbo nucifera HOM05D005837 ORTHO05D007594 1.2e-121 440.3 326 72.4
PSO210G6484 Papaver somniferum HOM05D005837 ORTHO05D007594 3.6e-121 438.7 336 71.4
VMungo0251G2060 Vigna mungo HOM05D005837 ORTHO05D007594 3.6e-121 438.7 324 71.9
Atru.chr4.64 Acer truncatum HOM05D005837 ORTHO05D007594 4.7e-121 438.3 328 73.2
CSS0040315 Camellia sinensis var. sinensis HOM05D005837 ORTHO05D007594 4.7e-121 438.3 326 73.3
Sabra05G0062100 Salix brachista HOM05D005837 ORTHO05D007594 4.7e-121 438.3 312 75.0
TWI77G0214 Tripterygium wilfordii HOM05D005837 ORTHO05D007594 4.7e-121 438.3 331 72.2
PSO447G0182 Papaver somniferum HOM05D005837 ORTHO05D007594 1.4e-120 436.8 338 70.4
SalBow5G3973 Salvia bowleyana HOM05D005837 ORTHO05D007594 1.8e-120 436.4 331 72.2
SalBow5G4805 Salvia bowleyana HOM05D005837 ORTHO05D007594 1.8e-120 436.4 331 72.2
Prupe.6G187000 Prunus persica HOM05D005837 ORTHO05D007594 2.3e-120 436.0 325 71.7
FvH4_1g20890 Fragaria vesca HOM05D005837 ORTHO05D007594 3.0e-120 435.6 329 70.8
Glyma.08G135800 Glycine max HOM05D005837 ORTHO05D007594 3.0e-120 435.6 325 71.7
THA.LOC104798971 Tarenaya hassleriana HOM05D005837 ORTHO05D007594 3.0e-120 435.6 319 74.0
COL.COLO4_09964 Corchorus olitorius HOM05D005837 ORTHO05D007594 5.2e-120 434.9 323 71.8
Cfa002663 Carpinus fangiana HOM05D005837 ORTHO05D007594 1.5e-119 433.3 324 71.6
RcHm_v2.0_Chr2g0113501 Rosa chinensis HOM05D005837 ORTHO05D007594 1.5e-119 433.3 316 73.4
Phvul.002G256000 Phaseolus vulgaris HOM05D005837 ORTHO05D007594 2.0e-119 433.0 308 74.4
arahy.Tifrunner.gnm1.ann1.UTAL3L Arachis hypogaea HOM05D005837 ORTHO05D007594 2.6e-119 432.6 324 71.9
BcaC01g02731 Brassica carinata HOM05D005837 ORTHO05D007594 5.7e-119 431.4 322 71.7
C03p61190 Brassica napus HOM05D005837 ORTHO05D007594 5.7e-119 431.4 322 71.7
BolC3t18379H Brassica oleracea HOM05D005837 ORTHO05D007594 5.7e-119 431.4 322 71.7
Lalb_Chr07g0185181 Lupinus albus HOM05D005837 ORTHO05D007594 5.7e-119 431.4 309 75.1
CiPaw.04G099500 Carya illinoinensis HOM05D005837 ORTHO05D007594 7.5e-119 431.0 325 70.8
Eucgr.H04785 Eucalyptus grandis HOM05D005837 ORTHO05D007594 9.8e-119 430.6 326 70.6
Actinidia28865 Actinidia chinensis HOM05D005837 ORTHO05D007594 1.3e-118 430.3 333 71.5
TPR.G6228 Trifolium pratense HOM05D005837 ORTHO05D007594 1.3e-118 430.3 325 72.6
BraA09t36542Z Brassica rapa HOM05D005837 ORTHO05D007594 1.7e-118 429.9 314 73.2
CANSAT01G1018 Cannabis sativa HOM05D005837 ORTHO05D007594 1.7e-118 429.9 324 70.4
BolC9t53935H Brassica oleracea HOM05D005837 ORTHO05D007594 2.2e-118 429.5 315 73.7
Gohir.A11G052200 Gossypium hirsutum HOM05D005837 ORTHO05D007594 2.8e-118 429.1 314 72.3
MD15G1324100 Malus domestica HOM05D005837 ORTHO05D007594 3.7e-118 428.7 324 71.3
A09p08910 Brassica napus HOM05D005837 ORTHO05D007594 6.3e-118 427.9 314 72.9
BraA06t26113Z Brassica rapa HOM05D005837 ORTHO05D007594 6.3e-118 427.9 309 73.8
Lj4g0008298 Lotus japonicus HOM05D005837 ORTHO05D007594 1.1e-117 427.2 314 72.3
A06p31820 Brassica napus HOM05D005837 ORTHO05D007594 2.4e-117 426.0 315 73.3
HanXRQChr09g0260241 Helianthus annuus HOM05D005837 ORTHO05D007594 2.4e-117 426.0 333 69.4
BcaC04g23271 Brassica carinata HOM05D005837 ORTHO05D007594 3.1e-117 425.6 315 73.0
C09p10350 Brassica napus HOM05D005837 ORTHO05D007594 3.1e-117 425.6 315 73.0
Carub.0008s2584 Capsella rubella HOM05D005837 ORTHO05D007594 3.1e-117 425.6 310 73.5
Ciclev10025805m.g Citrus clementina HOM05D005837 ORTHO05D007594 3.1e-117 425.6 332 69.9
MELO3C007756.2 Cucumis melo HOM05D005837 ORTHO05D007594 3.1e-117 425.6 331 71.0
Medtr8g090230 Medicago truncatula HOM05D005837 ORTHO05D007594 4.1e-117 425.2 325 71.1
CSS0022010 Camellia sinensis var. sinensis HOM05D005837 ORTHO05D007594 5.4e-117 424.9 333 70.0
MBI05_g19355_MAGBIO Magnolia biondii HOM05D005837 ORTHO05D007594 5.4e-117 424.9 333 70.0
CARHR293770 Cardamine hirsuta HOM05D005837 ORTHO05D007594 9.2e-117 424.1 323 72.1
PGR102G0026 Punica granatum HOM05D005837 ORTHO05D007594 1.2e-116 423.7 329 70.2
Sp2g28080 Schrenkiella parvula HOM05D005837 ORTHO05D007594 2.0e-116 422.9 309 74.4
Aqoxy5G01893 Aquilegia oxysepala HOM05D005837 ORTHO05D007594 3.5e-116 422.2 326 68.7
BcaB02g09852 Brassica carinata HOM05D005837 ORTHO05D007594 7.7e-116 421.0 310 73.2
BcaB02g09853 Brassica carinata HOM05D005837 ORTHO05D007594 7.7e-116 421.0 310 73.2
FAN28G0473 Fragaria x ananassa HOM05D005837 ORTHO05D007594 7.7e-116 421.0 329 69.6
Ca_17737_v3 Cicer arietinum L. HOM05D005837 ORTHO05D007594 1.7e-115 419.9 325 71.4
Thhalv10004589m.g Eutrema salsugineum HOM05D005837 ORTHO05D007594 1.7e-115 419.9 314 72.6
AT5G65000 Arabidopsis thaliana HOM05D005837 ORTHO05D007594 3.8e-115 418.7 310 73.9
Oeu053549.4 Olea europaea HOM05D005837 ORTHO05D007594 3.8e-115 418.7 299 75.3
Ah.03g143560 Amaranthus hybridus HOM05D005837 ORTHO05D007594 6.6e-115 417.9 309 71.8
BcaB04g20002 Brassica carinata HOM05D005837 ORTHO05D007594 8.6e-115 417.5 314 72.3
Aa31LG1G16930 Aethionema arabicum HOM05D005837 ORTHO05D007594 1.5e-114 416.8 333 68.5
AL8G42500 Arabidopsis lyrata HOM05D005837 ORTHO05D007594 1.5e-114 416.8 310 73.5
FAN23G0829 Fragaria x ananassa HOM05D005837 ORTHO05D007594 2.5e-114 416.0 369 63.1
Sc16g0005040 Simmondsia chinensis HOM05D005837 ORTHO05D007594 9.5e-114 414.1 326 69.6
DCAR_014225 Daucus carota HOM05D005837 ORTHO05D007594 2.1e-113 412.9 326 69.6
EL10Ac6g15104 Beta vulgaris HOM05D005837 ORTHO05D007594 3.6e-113 412.1 319 70.5
ATR0118G022 Amborella trichopoda HOM05D005837 ORTHO05D007594 3.0e-112 409.1 309 70.2
FAN26G1738 Fragaria x ananassa HOM05D005837 ORTHO05D007594 3.0e-112 409.1 375 61.6
HPP92_016352 Vanilla planifolia HOM05D005837 ORTHO05D007594 3.4e-111 405.6 312 68.6
ECA232G4987 Erigeron canadensis HOM05D005837 ORTHO05D007594 1.1e-109 400.6 286 75.5
unitig_32.g10697 Utricularia gibba HOM05D005837 ORTHO05D007594 1.1e-109 400.6 332 65.1
ClCG01G018760 Citrullus lanatus HOM05D005837 ORTHO05D007594 7.0e-109 397.9 323 69.7
CsaV3_6G045430 Cucumis sativus L. HOM05D005837 ORTHO05D007594 1.0e-107 394.0 309 71.2
Sed0019406 Sechium edule HOM05D005837 ORTHO05D007594 7.3e-106 387.9 313 69.3
Lsat_1_v5_gn_4_141261 Lactuca sativa HOM05D005837 ORTHO05D007594 1.2e-105 387.1 284 75.4
Haze_24932 Corylus avellana HOM05D005837 ORTHO05D007594 2.1e-105 386.3 406 56.9
Manes.12G134900 Manihot esculenta HOM05D005837 ORTHO05D007594 2.2e-102 376.3 273 74.4
Zm00001eb244760 Zea mays HOM05D005837 ORTHO05D007594 1.6e-100 370.2 308 66.9
Actinidia28231 Actinidia chinensis HOM05D005837 ORTHO05D007594 2.0e-100 369.8 296 70.3
Lj4A891G48 Lonicera japonica HOM05D005837 ORTHO05D007594 3.5e-100 369.0 276 72.8
AUR62002009 Chenopodium quinoa HOM05D005837 ORTHO05D007594 8.6e-99 364.4 294 69.4
SHI29446 Sapria himalayana HOM05D005837 ORTHO05D007594 3.3e-98 362.5 321 60.4
AUR62003793 Chenopodium quinoa HOM05D005837 ORTHO05D007594 4.3e-98 362.1 328 62.8
Cc07_g15220 Coffea canephora HOM05D005837 ORTHO05D007594 4.3e-98 362.1 281 72.6
Hund16285 Selenicereus undatus HOM05D005837 ORTHO05D007594 1.2e-95 354.0 420 51.7
FAN19G3104 Fragaria x ananassa HOM05D005837 ORTHO05D007594 2.2e-94 349.7 277 68.2
SEGI_29496 Sequoiadendron giganteum HOM05D005837 ORTHO05D007594 1.6e-89 333.6 296 62.5
Dinv21909 Davidia involucrata HOM05D005837 ORTHO05D007594 8.9e-88 327.8 256 69.5
Dinv13188 Davidia involucrata HOM05D005837 ORTHO05D007594 7.6e-87 324.7 250 70.4
Potri.007G092800 Populus trichocarpa HOM05D005837 ORTHO05D007594 4.1e-85 318.9 239 70.7
Zm00001eb182830 Zea mays HOM05D005837 ORTHO05D007594 4.6e-84 315.5 311 57.6
Pp3c3_32740 Physcomitrium patens HOM05D005837 ORTHO05D007594 8.1e-81 304.7 301 56.8
SMO169G0194 Selaginella moellendorffii HOM05D005837 ORTHO05D007594 3.4e-79 299.3 302 56.0
Psat7g054880 Pisum sativum HOM05D005837 ORTHO05D007594 2.4e-77 293.1 254 64.6
Oeu002173.1 Olea europaea HOM05D005837 ORTHO05D007594 4.5e-71 272.3 285 55.4
Mapoly0120s0005 Marchantia polymorpha HOM05D005837 ORTHO05D007594 8.1e-65 251.5 249 57.8
CBR_g39403 Chara braunii HOM05D005837 ORTHO05D007594 3.8e-62 242.7 297 46.5
CDE10G0517 Ceratophyllum demersum HOM05D005837 ORTHO05D007594 1.1e-45 188.0 255 47.5
Os02g0573300 Oryza sativa ssp. japonica HOM05D005837 ORTHO05D007594 1.2e-39 167.9 131 71.0
CAN.G151.30 Capsicum annuum HOM05D005837 ORTHO05D007594 2.6e-39 166.8 93 94.6
AagrBONN_evm.TU.Sc2ySwM_117.3229 Anthoceros agrestis HOM05D005837 ORTHO05D007594 1.1e-37 161.4 230 43.5
vmacro18603 Vaccinium macrocarpon HOM05D005837 ORTHO05D007594 3.6e-36 156.4 140 62.9
RcHm_v2.0_Chr3g0453281 Rosa chinensis HOM05D005837 ORTHO05D007594 3.9e-35 152.9 192 49.5
vmacro18602 Vaccinium macrocarpon HOM05D005837 ORTHO05D024186 1.3e-30 137.9 77 88.3
RcHm_v2.0_Chr3g0467111 Rosa chinensis HOM05D005837 ORTHO05D007594 2.9e-30 136.7 158 55.1
MCO05G725 Micromonas commoda HOM05D005837 ORTHO05D007594 7.2e-29 132.1 321 34.6
MBI10_g33306_MAGBIO Magnolia biondii HOM05D000934 ORTHO05D000746 3.5e-23 113.2 117 53.8
Cc07_g15210 Coffea canephora HOM05D005837 ORTHO05D024186 3.7e-17 93.2 52 84.6
MBI10_g27985_MAGBIO Magnolia biondii HOM05D000934 ORTHO05D000746 3.8e-14 83.2 102 50.0
Haze_26763 Corylus avellana HOM05D001098 ORTHO05D034890 1.2e-10 71.6 338 24.9
Haze_26352 Corylus avellana HOM05D001098 ORTHO05D034890 2.8e-09 67.0 227 29.1
BolC2t11972H Brassica oleracea HOM05D005837 ORTHO05D024186 3.1e-08 63.5 49 63.3
CSS0035199 Camellia sinensis var. sinensis HOM05D001098 ORTHO05D002527 4.5e-07 59.7 295 24.1
MBI01_g32424_MAGBIO Magnolia biondii HOM05D001098 ORTHO05D002527 5.0e-06 56.2 299 24.4
TWI79G1444 Tripterygium wilfordii HOM05D001098 ORTHO05D002527 5.0e-06 56.2 281 24.2
unitig_90.g27539 Utricularia gibba HOM05D001098 ORTHO05D002527 5.0e-06 56.2 279 21.9
QL06p014336 Quercus lobata HOM05D001098 ORTHO05D002527 6.5e-06 55.8 294 23.5
Aqoxy3G04159 Aquilegia oxysepala HOM05D001098 ORTHO05D002527 8.6e-06 55.5 280 23.6
Glyma.02G312000 Glycine max HOM05D001098 ORTHO05D002527 8.6e-06 55.5 294 23.5


User provided reference genes

Program Settings