Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0006850g0010 Nicotiana tabacum HOM05D004785 ORTHO05D005704 1.7e-236 822.4 437 100.0
Sopen01g033900 Solanum pennellii HOM05D004785 ORTHO05D005704 2.2e-180 636.0 427 80.8
PGSC0003DMG400025264 Solanum tuberosum HOM05D004785 ORTHO05D005704 1.1e-179 633.6 427 80.6
CAN.G170.130 Capsicum annuum HOM05D004785 ORTHO05D005704 1.9e-179 632.9 426 81.2
Solyc01g086890.3 Solanum lycopersicum HOM05D004785 ORTHO05D005704 3.2e-179 632.1 427 80.1
Nitab4.5_0001542g0040 Nicotiana tabacum HOM05D004785 ORTHO05D005704 2.5e-168 595.9 317 97.8
Peaxi162Scf00428g00096 Petunia axillaris HOM05D004785 ORTHO05D005704 4.9e-156 555.1 427 75.2
Cc02_g27530 Coffea canephora HOM05D004785 ORTHO05D005704 7.4e-152 541.2 434 68.4
Dinv09378 Davidia involucrata HOM05D004785 ORTHO05D005704 2.3e-145 519.6 489 61.3
Dinv43463 Davidia involucrata HOM05D004785 ORTHO05D005704 1.1e-144 517.3 448 66.3
Potri.001G269900 Populus trichocarpa HOM05D004785 ORTHO05D005704 1.6e-143 513.5 431 66.4
MSTRG.20603 Avicennia marina HOM05D004785 ORTHO05D005704 4.8e-143 511.9 429 66.0
RcHm_v2.0_Chr1g0314901 Rosa chinensis HOM05D004785 ORTHO05D005704 6.2e-143 511.5 421 65.3
SalBow4G2313 Salvia bowleyana HOM05D004785 ORTHO05D005704 1.1e-142 510.8 425 65.6
GSVIVG01032056001 Vitis vinifera HOM05D004785 ORTHO05D005704 1.8e-142 510.0 435 65.3
TAR636G1066 Trochodendron aralioides HOM05D004785 ORTHO05D005704 2.4e-142 509.6 425 66.8
CiPaw.13G002800 Carya illinoinensis HOM05D004785 ORTHO05D005704 9.0e-142 507.7 428 65.9
Gohir.D08G037900 Gossypium hirsutum HOM05D004785 ORTHO05D005704 9.0e-142 507.7 422 65.9
Gorai.004G035900 Gossypium raimondii HOM05D004785 ORTHO05D005704 1.2e-141 507.3 427 65.1
Nn7g36099 Nelumbo nucifera HOM05D004785 ORTHO05D005704 2.0e-141 506.5 432 66.0
Migut.N01482 Erythranthe guttata HOM05D004785 ORTHO05D005704 5.8e-141 505.0 427 64.2
Prupe.2G009600 Prunus persica HOM05D004785 ORTHO05D005704 1.0e-140 504.2 425 64.7
FvH4_7g00680 Fragaria vesca HOM05D004785 ORTHO05D005704 3.2e-139 499.2 421 65.3
FAN06G5068 Fragaria x ananassa HOM05D004785 ORTHO05D005704 3.2e-139 499.2 421 65.3
Rhsim01G0130900 Rhododendron simsii HOM05D004785 ORTHO05D005704 3.2e-139 499.2 420 64.5
Thecc.01G414000 Theobroma cacao HOM05D004785 ORTHO05D005704 4.2e-139 498.8 430 64.0
FAN10G3515 Fragaria x ananassa HOM05D004785 ORTHO05D005704 5.5e-139 498.4 421 65.3
Potri.009G064600 Populus trichocarpa HOM05D004785 ORTHO05D005704 5.5e-139 498.4 431 66.8
FAN01G2822 Fragaria x ananassa HOM05D004785 ORTHO05D005704 9.3e-139 497.7 421 65.1
FAN01G2446 Fragaria x ananassa HOM05D004785 ORTHO05D005704 2.1e-138 496.5 421 64.8
CSS0030425 Camellia sinensis var. sinensis HOM05D004785 ORTHO05D005704 6.1e-138 495.0 429 66.2
CSS0016942 Camellia sinensis var. sinensis HOM05D004785 ORTHO05D005704 1.3e-137 493.8 429 66.0
FAN03G2451 Fragaria x ananassa HOM05D004785 ORTHO05D005704 1.3e-137 493.8 421 65.1
Hma1.2p1_0845F.1_g227490 Hydrangea macrophylla HOM05D004785 ORTHO05D005704 3.0e-137 492.7 442 64.3
VMungo1080G1418 Vigna mungo HOM05D004785 ORTHO05D005704 5.1e-137 491.9 430 63.3
Duzib138G0206 Durio zibethinus HOM05D004785 ORTHO05D005704 2.5e-136 489.6 433 63.7
MBI04_g14260_MAGBIO Magnolia biondii HOM05D004785 ORTHO05D005704 2.5e-136 489.6 427 63.9
Nn2g15504 Nelumbo nucifera HOM05D004785 ORTHO05D005704 2.5e-136 489.6 427 68.1
Phvul.005G036800 Phaseolus vulgaris HOM05D004785 ORTHO05D005704 3.3e-136 489.2 430 62.8
QL04p005208 Quercus lobata HOM05D004785 ORTHO05D005704 5.7e-136 488.4 430 67.2
Glyma.15G272000 Glycine max HOM05D004785 ORTHO05D005704 2.2e-135 486.5 413 64.6
vmacro21177 Vaccinium macrocarpon HOM05D004785 ORTHO05D005704 1.4e-134 483.8 422 63.3
arahy.Tifrunner.gnm1.ann1.59DMFX Arachis hypogaea HOM05D004785 ORTHO05D005704 1.8e-134 483.4 428 63.1
Cpa.g.sc234.14 Carica papaya HOM05D004785 ORTHO05D005704 1.8e-134 483.4 459 61.9
arahy.Tifrunner.gnm1.ann1.M8XEBR Arachis hypogaea HOM05D004785 ORTHO05D005704 3.1e-134 482.6 428 62.9
HanXRQChr15g0479141 Helianthus annuus HOM05D004785 ORTHO05D005704 6.9e-134 481.5 413 64.9
Lalb_Chr19g0132061 Lupinus albus HOM05D004785 ORTHO05D005704 1.5e-133 480.3 424 63.0
Ciclev10031609m.g Citrus clementina HOM05D004785 ORTHO05D005704 4.5e-133 478.8 427 64.6
MD07G1006500 Malus domestica HOM05D004785 ORTHO05D005704 5.9e-133 478.4 478 58.4
Aqoxy1G00294 Aquilegia oxysepala HOM05D004785 ORTHO05D005704 1.0e-132 477.6 422 64.0
Gohir.A08G027150 Gossypium hirsutum HOM05D004785 ORTHO05D005704 1.3e-132 477.2 423 63.6
Lalb_Chr01g0008111 Lupinus albus HOM05D004785 ORTHO05D005704 1.7e-132 476.9 431 63.3
CsaV3_7G031250 Cucumis sativus L. HOM05D004785 ORTHO05D005704 6.5e-132 474.9 440 62.5
ECA246G0971 Erigeron canadensis HOM05D004785 ORTHO05D005704 8.5e-132 474.6 413 63.7
SalBow5G0866 Salvia bowleyana HOM05D004785 ORTHO05D005704 1.4e-131 473.8 427 62.1
SalBow5G5194 Salvia bowleyana HOM05D004785 ORTHO05D005704 1.4e-131 473.8 427 62.1
Glyma.08G152600 Glycine max HOM05D004785 ORTHO05D005704 1.9e-131 473.4 434 62.4
Manes.10G146300 Manihot esculenta HOM05D004785 ORTHO05D005704 2.5e-131 473.0 433 62.4
THA.LOC104801982 Tarenaya hassleriana HOM05D004785 ORTHO05D005704 3.2e-131 472.6 433 61.9
Psat4g149360 Pisum sativum HOM05D004785 ORTHO05D005704 2.1e-130 469.9 433 60.7
Thhalv10010376m.g Eutrema salsugineum HOM05D004785 ORTHO05D005704 2.7e-130 469.5 437 60.0
MELO3C023531.2 Cucumis melo HOM05D004785 ORTHO05D005704 3.6e-130 469.2 438 62.3
Carub.0005s1846 Capsella rubella HOM05D004785 ORTHO05D005704 6.1e-130 468.4 437 59.7
Actinidia20681 Actinidia chinensis HOM05D004785 ORTHO05D005704 7.9e-130 468.0 427 63.5
AT3G52120 Arabidopsis thaliana HOM05D004785 ORTHO05D005704 1.8e-129 466.8 434 60.4
Sed0027076 Sechium edule HOM05D004785 ORTHO05D005704 3.9e-129 465.7 432 59.5
TPR.G21739 Trifolium pratense HOM05D004785 ORTHO05D005704 3.9e-129 465.7 431 60.8
TAR633G2005 Trochodendron aralioides HOM05D004785 ORTHO05D005704 2.0e-128 463.4 431 62.2
Duzib268G1355 Durio zibethinus HOM05D004785 ORTHO05D005704 2.5e-128 463.0 429 60.4
CANSAT11G0943 Cannabis sativa HOM05D004785 ORTHO05D005704 3.3e-128 462.6 423 62.4
AL5G32690 Arabidopsis lyrata HOM05D004785 ORTHO05D005704 4.3e-128 462.2 454 58.6
Lj3g0000927 Lotus japonicus HOM05D004785 ORTHO05D005704 4.3e-128 462.2 430 59.3
MBI01_g36433_MAGBIO Magnolia biondii HOM05D004785 ORTHO05D005704 7.4e-128 461.5 433 61.9
Sp5g10160 Schrenkiella parvula HOM05D004785 ORTHO05D005704 9.7e-128 461.1 443 59.6
Sabra16G0165300 Salix brachista HOM05D004785 ORTHO05D005704 2.2e-127 459.9 447 60.0
Medtr8g036890 Medicago truncatula HOM05D004785 ORTHO05D005704 6.3e-127 458.4 431 60.8
Sc15g0001680 Simmondsia chinensis HOM05D004785 ORTHO05D005704 1.4e-126 457.2 422 62.3
Atru.chr11.2638 Acer truncatum HOM05D004785 ORTHO05D005704 2.4e-126 456.4 435 60.9
Sabra09G0047800 Salix brachista HOM05D004785 ORTHO05D005704 2.4e-126 456.4 431 59.4
Lsat_1_v5_gn_4_68280 Lactuca sativa HOM05D004785 ORTHO05D005704 1.2e-125 454.1 410 63.2
Aa31LG10G7210 Aethionema arabicum HOM05D004785 ORTHO05D005704 2.0e-125 453.4 476 56.1
Hund03669 Selenicereus undatus HOM05D004785 ORTHO05D005704 3.4e-125 452.6 422 59.7
Manes.07G003900 Manihot esculenta HOM05D004785 ORTHO05D005704 7.7e-125 451.4 438 60.7
Eucgr.G03395 Eucalyptus grandis HOM05D004785 ORTHO05D005704 1.3e-124 450.7 424 60.4
TWI73G0859 Tripterygium wilfordii HOM05D004785 ORTHO05D005704 8.5e-124 448.0 436 58.5
TWI09G1360 Tripterygium wilfordii HOM05D004785 ORTHO05D005704 1.9e-123 446.8 444 58.6
COL.COLO4_23900 Corchorus olitorius HOM05D004785 ORTHO05D005704 2.1e-122 443.4 452 57.1
Lj3g0006296 Lotus japonicus HOM05D004785 ORTHO05D005704 3.6e-122 442.6 428 60.3
SGA_v2.0_scaffold95G28788 Striga asiatica HOM05D004785 ORTHO05D005704 3.3e-120 436.0 446 57.0
A09p45180 Brassica napus HOM05D004785 ORTHO05D005704 1.3e-119 434.1 435 58.4
BraA09t39981Z Brassica rapa HOM05D004785 ORTHO05D005704 1.4e-118 430.6 432 59.0
CDE10G0170 Ceratophyllum demersum HOM05D004785 ORTHO05D005704 7.0e-118 428.3 439 57.4
Hund07648 Selenicereus undatus HOM05D004785 ORTHO05D005704 7.0e-118 428.3 419 58.0
BolC8t50356H Brassica oleracea HOM05D004785 ORTHO05D005704 1.2e-117 427.6 444 57.9
C08p27390 Brassica napus HOM05D004785 ORTHO05D005704 1.5e-117 427.2 438 58.2
AUR62022266 Chenopodium quinoa HOM05D004785 ORTHO05D005704 3.5e-117 426.0 425 57.4
BcaNung06094 Brassica carinata HOM05D004785 ORTHO05D005704 2.9e-116 422.9 438 57.5
PSO339G6673 Papaver somniferum HOM05D004785 ORTHO05D005704 3.2e-115 419.5 435 57.2
unitig_61.g26449 Utricularia gibba HOM05D004785 ORTHO05D005704 1.6e-114 417.2 429 56.2
PSO384G1867 Papaver somniferum HOM05D004785 ORTHO05D005704 2.1e-114 416.8 436 57.1
Ca_23868_v3 Cicer arietinum L. HOM05D004785 ORTHO05D005704 2.3e-113 413.3 426 57.0
PGR044G1403 Punica granatum HOM05D004785 ORTHO05D005704 1.5e-112 410.6 425 57.4
CDE10G1291 Ceratophyllum demersum HOM05D004785 ORTHO05D005704 7.0e-110 401.7 414 55.1
Actinidia21563 Actinidia chinensis HOM05D004785 ORTHO05D005704 9.1e-110 401.4 421 57.5
EL10Ac9g21166 Beta vulgaris HOM05D004785 ORTHO05D005704 3.5e-109 399.4 425 54.6
ATR0733G146 Amborella trichopoda HOM05D004785 ORTHO05D005704 2.7e-106 389.8 436 55.0
Lj7C568G16 Lonicera japonica HOM05D004785 ORTHO05D005704 1.5e-104 384.0 418 57.4
Mapoly0063s0041 Marchantia polymorpha HOM05D004785 ORTHO05D005704 2.4e-102 376.7 459 50.1
Oeu014580.2 Olea europaea HOM05D004785 ORTHO05D005704 5.3e-102 375.6 373 58.7
HPP92_022791 Vanilla planifolia HOM05D004785 ORTHO05D005704 1.3e-100 370.9 434 53.2
Sed0007108 Sechium edule HOM05D004785 ORTHO05D005704 3.8e-100 369.4 377 57.8
AUR62031974 Chenopodium quinoa HOM05D004785 ORTHO05D005704 5.0e-100 369.0 409 53.5
CDE04G1996 Ceratophyllum demersum HOM05D004785 ORTHO05D005704 4.2e-99 365.9 370 55.9
SEGI_00751 Sequoiadendron giganteum HOM05D004785 ORTHO05D005704 5.5e-99 365.5 429 53.6
Zm00001eb325220 Zea mays HOM05D004785 ORTHO05D005704 2.3e-92 343.6 416 51.2
DCAR_029653 Daucus carota HOM05D004785 ORTHO05D005704 4.2e-91 339.3 422 50.9
unitig_0.g1380 Utricularia gibba HOM05D004785 ORTHO05D005704 3.4e-88 329.7 307 59.9
SMO358G0717 Selaginella moellendorffii HOM05D004785 ORTHO05D005704 9.8e-88 328.2 462 46.5
Eucgr.J01259 Eucalyptus grandis HOM05D004785 ORTHO05D005704 1.9e-83 313.9 368 52.4
Pp3c7_22470 Physcomitrium patens HOM05D004785 ORTHO05D005704 2.8e-82 310.1 461 45.8
CBR_g19876 Chara braunii HOM05D004785 ORTHO05D005704 1.0e-81 308.1 503 42.7
MD02G1315400 Malus domestica HOM05D004785 ORTHO05D005704 1.4e-78 297.7 304 57.9
Medtr8g036260 Medicago truncatula HOM05D004785 ORTHO05D005704 3.7e-71 273.1 305 54.8
CARHR161860 Cardamine hirsuta HOM05D004785 ORTHO05D005704 4.9e-63 246.1 159 76.1
Haze_03237 Corylus avellana HOM05D004785 ORTHO05D005704 3.5e-61 240.0 214 65.0
Gohir.A08G145800 Gossypium hirsutum HOM05D004785 ORTHO05D005704 2.2e-55 220.7 334 47.3
SHI47607 Sapria himalayana HOM05D004785 ORTHO05D005704 5.4e-54 216.1 321 42.7
SHI47732 Sapria himalayana HOM05D004785 ORTHO05D005704 5.4e-54 216.1 321 42.7
Gohir.D08G166700 Gossypium hirsutum HOM05D004785 ORTHO05D005704 7.1e-54 215.7 430 40.5
Gorai.004G174100 Gossypium raimondii HOM05D004785 ORTHO05D005704 6.0e-53 212.6 429 40.6
Eucgr.B02099 Eucalyptus grandis HOM05D004785 ORTHO05D005704 2.5e-51 207.2 127 78.7
AagrBONN_evm.TU.Sc2ySwM_228.206 Anthoceros agrestis HOM05D004785 ORTHO05D005704 1.4e-49 201.4 340 41.8
TAR623G0847 Trochodendron aralioides HOM05D004785 ORTHO05D005704 6.6e-44 182.6 188 53.2
Pp3c11_4770 Physcomitrium patens HOM05D004785 ORTHO05D005704 1.9e-38 164.5 313 39.9
Oeu006578.1 Olea europaea HOM05D004785 ORTHO05D005704 1.5e-35 154.8 162 56.8
BolC4t25664H Brassica oleracea HOM05D004785 ORTHO05D005704 3.1e-33 147.1 148 55.4
Eucgr.A02263 Eucalyptus grandis HOM05D004785 ORTHO05D005704 2.0e-32 144.4 83 83.1
TAR623G0421 Trochodendron aralioides HOM05D004785 ORTHO05D005704 1.3e-31 141.7 91 74.7
BcaC02g09278 Brassica carinata HOM05D004785 ORTHO05D005704 2.5e-30 137.5 173 47.4
C04p40800 Brassica napus HOM05D004785 ORTHO05D005704 2.5e-30 137.5 173 47.4
Pp3c11_4670 Physcomitrium patens HOM05D004785 ORTHO05D005704 3.3e-27 127.1 256 39.1
Cre16.g686000 Chlamydomonas reinhardtii HOM05D004785 ORTHO05D005704 9.6e-27 125.6 472 30.1
A04p07240 Brassica napus HOM05D004785 ORTHO05D005704 1.1e-25 122.1 122 54.1
BraA04t16419Z Brassica rapa HOM05D004785 ORTHO05D005704 1.8e-25 121.3 110 60.0
Medtr8g036255 Medicago truncatula HOM05D004785 ORTHO05D005704 1.2e-24 118.6 64 84.4
ClCG09G004330 Citrullus lanatus HOM05D004785 ORTHO05D005704 1.3e-23 115.2 59 91.5
DCAR_029646 Daucus carota HOM05D004785 ORTHO05D005704 3.5e-21 107.1 58 84.5
CARHR161850 Cardamine hirsuta HOM05D004785 ORTHO05D005704 1.7e-15 88.2 132 44.7
MCO15G372 Micromonas commoda HOM05D004785 ORTHO05D005704 1.1e-14 85.5 499 24.2
AagrBONN_evm.TU.Sc2ySwM_228.74 Anthoceros agrestis HOM05D004785 ORTHO05D005704 1.1e-11 75.5 62 61.3
unitig_0.g1381 Utricularia gibba HOM05D004785 ORTHO05D005704 1.0e-07 62.4 91 48.4
Cre02.g105287 Chlamydomonas reinhardtii HOM05D004785 ORTHO05D008521 4.2e-06 57.0 56 46.4
Manes.09G181300 Manihot esculenta HOM05D005826 ORTHO05D004357 5.5e-06 56.6 111 33.3
Manes.14G062600 Manihot esculenta HOM05D007081 ORTHO05D008834 5.5e-06 56.6 89 38.2
Mapoly0043s0012 Marchantia polymorpha HOM05D000251 ORTHO05D007889 5.5e-06 56.6 66 40.9


User provided reference genes

Program Settings