Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0006802g0070 Nicotiana tabacum HOM05D003655 ORTHO05D004065 0.0e+00 1479.5 795 100.0
Sopen02g031240 Solanum pennellii HOM05D003655 ORTHO05D004065 1.2e-306 1056.2 872 67.3
PGSC0003DMG400012599 Solanum tuberosum HOM05D003655 ORTHO05D004065 6.1e-306 1053.9 872 67.5
Nitab4.5_0002682g0090 Nicotiana tabacum HOM05D003655 ORTHO05D004065 5.6e-299 1030.8 769 73.7
Peaxi162Scf00129g01426 Petunia axillaris HOM05D003655 ORTHO05D004065 7.5e-288 993.8 864 65.3
Peaxi162Scf00700g00429 Petunia axillaris HOM05D003655 ORTHO05D004065 4.0e-257 891.7 889 57.6
Nitab4.5_0000419g0080 Nicotiana tabacum HOM05D003655 ORTHO05D004065 7.6e-256 887.5 888 57.9
PGSC0003DMG400004231 Solanum tuberosum HOM05D003655 ORTHO05D004065 1.0e-244 850.5 886 56.2
Sopen12g014870 Solanum pennellii HOM05D003655 ORTHO05D004065 2.9e-239 832.4 867 55.5
Solyc12g035250.3 Solanum lycopersicum HOM05D003655 ORTHO05D004065 6.5e-239 831.2 867 55.7
Nitab4.5_0002385g0010 Nicotiana tabacum HOM05D003655 ORTHO05D004065 2.0e-232 809.7 902 54.5
Solyc02g086510.4 Solanum lycopersicum HOM05D003655 ORTHO05D004065 8.8e-220 767.7 666 63.5
Cc07_g01820 Coffea canephora HOM05D003655 ORTHO05D004065 8.0e-197 691.4 895 48.4
CSS0046674 Camellia sinensis var. sinensis HOM05D003655 ORTHO05D004065 7.0e-193 678.3 917 47.1
CSS0034547 Camellia sinensis var. sinensis HOM05D003655 ORTHO05D004065 5.0e-191 672.2 917 46.9
CSS0048500 Camellia sinensis var. sinensis HOM05D003655 ORTHO05D004065 2.8e-189 666.4 896 47.0
CiPaw.03G042300 Carya illinoinensis HOM05D003655 ORTHO05D004065 5.8e-187 658.7 904 46.6
Rhsim08G0051400 Rhododendron simsii HOM05D003655 ORTHO05D004065 1.9e-185 653.7 885 47.2
Dinv35101 Davidia involucrata HOM05D003655 ORTHO05D004065 1.0e-183 647.9 833 46.3
vmacro18276 Vaccinium macrocarpon HOM05D003655 ORTHO05D004065 1.1e-180 637.9 885 46.3
QL02p075116 Quercus lobata HOM05D003655 ORTHO05D004065 1.5e-179 634.0 937 43.6
Prupe.3G290100 Prunus persica HOM05D003655 ORTHO05D004065 9.8e-179 631.3 912 45.7
Manes.15G166100 Manihot esculenta HOM05D003655 ORTHO05D004065 1.2e-176 624.4 918 44.0
Manes.17G115600 Manihot esculenta HOM05D003655 ORTHO05D004065 1.6e-176 624.0 908 44.4
Haze_14727 Corylus avellana HOM05D003655 ORTHO05D004065 6.6e-175 618.6 902 44.5
MD17G1029900 Malus domestica HOM05D003655 ORTHO05D004065 8.6e-175 618.2 911 44.3
Thecc.04G015700 Theobroma cacao HOM05D003655 ORTHO05D004065 8.6e-175 618.2 907 43.3
Duzib187G1135 Durio zibethinus HOM05D003655 ORTHO05D004065 1.5e-174 617.5 879 43.3
RcHm_v2.0_Chr2g0173051 Rosa chinensis HOM05D003655 ORTHO05D004065 1.2e-173 614.4 919 43.3
Potri.001G351532 Populus trichocarpa HOM05D003655 ORTHO05D004065 3.1e-172 609.8 914 43.5
Ciclev10014173m.g Citrus clementina HOM05D003655 ORTHO05D004065 1.5e-171 607.4 917 43.0
MD09G1028400 Malus domestica HOM05D003655 ORTHO05D004065 2.0e-171 607.1 912 43.5
MSTRG.24033 Avicennia marina HOM05D003655 ORTHO05D004065 3.4e-171 606.3 883 45.1
Potri.017G072100 Populus trichocarpa HOM05D003655 ORTHO05D004065 4.4e-171 605.9 907 44.2
Gohir.D04G057000 Gossypium hirsutum HOM05D003655 ORTHO05D004065 2.2e-170 603.6 905 42.0
Oeu063478.1 Olea europaea HOM05D003655 ORTHO05D004065 6.4e-170 602.1 870 43.2
Gohir.A05G356200 Gossypium hirsutum HOM05D003655 ORTHO05D004065 8.4e-170 601.7 889 42.4
Gorai.012G063700 Gossypium raimondii HOM05D003655 ORTHO05D004065 1.9e-169 600.5 905 41.9
FAN05G2840 Fragaria x ananassa HOM05D003655 ORTHO05D004065 1.5e-166 590.9 918 42.3
MSTRG.3149 Avicennia marina HOM05D003655 ORTHO05D004065 1.9e-166 590.5 861 45.2
FAN14G5704 Fragaria x ananassa HOM05D003655 ORTHO05D004065 4.3e-166 589.3 920 42.5
FvH4_6g51350 Fragaria vesca HOM05D003655 ORTHO05D004065 5.6e-166 589.0 920 42.5
COL.COLO4_29094 Corchorus olitorius HOM05D003655 ORTHO05D004065 1.6e-165 587.4 903 42.3
SalBow6G0256 Salvia bowleyana HOM05D003655 ORTHO05D004065 4.7e-165 585.9 871 44.0
Sabra16G0231200 Salix brachista HOM05D003655 ORTHO05D004065 5.2e-164 582.4 964 41.0
Lj4A88G37 Lonicera japonica HOM05D003655 ORTHO05D004065 2.0e-163 580.5 894 44.6
FAN09G1146 Fragaria x ananassa HOM05D003655 ORTHO05D004065 4.4e-163 579.3 917 42.3
FAN02G0206 Fragaria x ananassa HOM05D003655 ORTHO05D004065 9.9e-163 578.2 913 42.3
Lj4C88T15 Lonicera japonica HOM05D003655 ORTHO05D004065 1.3e-162 577.8 903 43.7
Actinidia35766 Actinidia chinensis HOM05D003655 ORTHO05D004065 1.7e-162 577.4 914 43.1
Glyma.05G004100 Glycine max HOM05D003655 ORTHO05D004065 8.4e-162 575.1 887 43.4
TWI56G0063 Tripterygium wilfordii HOM05D003655 ORTHO05D004065 8.4e-162 575.1 919 40.9
Dinv33450 Davidia involucrata HOM05D003655 ORTHO05D004065 1.9e-161 573.9 572 58.7
Glyma.19G004000 Glycine max HOM05D003655 ORTHO05D004065 2.4e-161 573.5 897 42.8
CANSAT64G1680 Cannabis sativa HOM05D003655 ORTHO05D004065 4.2e-161 572.8 935 42.4
SGA_v2.0_scaffold135G34898 Striga asiatica HOM05D003655 ORTHO05D004065 4.6e-160 569.3 897 42.8
Phvul.004G007600 Phaseolus vulgaris HOM05D003655 ORTHO05D004065 3.3e-158 563.1 890 42.4
Gohir.D09G028200 Gossypium hirsutum HOM05D003655 ORTHO05D004065 2.1e-157 560.5 912 39.9
Migut.H00084 Erythranthe guttata HOM05D003655 ORTHO05D004065 2.8e-157 560.1 870 44.1
Gorai.006G032800 Gossypium raimondii HOM05D003655 ORTHO05D004065 3.6e-157 559.7 914 39.8
DCAR_011248 Daucus carota HOM05D003655 ORTHO05D004065 8.1e-157 558.5 898 41.9
Psat1g054960 Pisum sativum HOM05D003655 ORTHO05D004065 1.4e-156 557.8 892 42.0
VMungo0464G0503 Vigna mungo HOM05D003655 ORTHO05D004065 3.1e-156 556.6 890 42.7
MBI10_g00730_MAGBIO Magnolia biondii HOM05D003655 ORTHO05D004065 1.2e-155 554.7 898 41.4
Duzib264G1220 Durio zibethinus HOM05D003655 ORTHO05D004065 3.4e-155 553.1 904 40.7
Lj2g0025004 Lotus japonicus HOM05D003655 ORTHO05D004065 4.9e-154 549.3 905 40.6
arahy.Tifrunner.gnm1.ann1.MY3LMM Arachis hypogaea HOM05D003655 ORTHO05D004065 6.4e-154 548.9 881 42.6
TAR622G0533 Trochodendron aralioides HOM05D003655 ORTHO05D004065 3.2e-153 546.6 948 41.2
Gohir.A09G028600 Gossypium hirsutum HOM05D003655 ORTHO05D004065 7.1e-153 545.4 914 40.3
Gohir.D07G229300 Gossypium hirsutum HOM05D003655 ORTHO05D004065 3.5e-152 543.1 847 40.3
Sc03g0007560 Simmondsia chinensis HOM05D003655 ORTHO05D004065 6.0e-152 542.3 885 40.8
Gorai.001G264400 Gossypium raimondii HOM05D003655 ORTHO05D004065 1.3e-151 541.2 864 39.8
MELO3C009984.2 Cucumis melo HOM05D003655 ORTHO05D004065 1.7e-151 540.8 844 42.8
Actinidia36106 Actinidia chinensis HOM05D003655 ORTHO05D004065 2.3e-151 540.4 756 46.0
Gohir.A07G222600 Gossypium hirsutum HOM05D003655 ORTHO05D004065 3.0e-151 540.0 899 38.7
Nn4g22660 Nelumbo nucifera HOM05D003655 ORTHO05D004065 1.1e-150 538.1 914 42.3
Sed0000390 Sechium edule HOM05D003655 ORTHO05D004065 9.6e-150 535.0 904 40.9
PGR142G1836 Punica granatum HOM05D003655 ORTHO05D004065 2.1e-149 533.9 911 40.5
CsaV3_3G042720 Cucumis sativus L. HOM05D003655 ORTHO05D004065 8.1e-149 531.9 844 42.7
Medtr6g004970 Medicago truncatula HOM05D003655 ORTHO05D004065 1.1e-148 531.6 914 40.8
SGA_v2.0_scaffold481G52311 Striga asiatica HOM05D003655 ORTHO05D004065 1.5e-147 527.7 912 41.2
Hund16251 Selenicereus undatus HOM05D003655 ORTHO05D004065 3.4e-147 526.6 886 41.6
ClCG10G013970 Citrullus lanatus HOM05D003655 ORTHO05D004065 5.8e-147 525.8 875 42.9
ECA238G4588 Erigeron canadensis HOM05D003655 ORTHO05D004065 7.6e-147 525.4 855 42.5
Sabra17G0060300 Salix brachista HOM05D003655 ORTHO05D004065 9.9e-147 525.0 855 42.9
Eucgr.I01752 Eucalyptus grandis HOM05D003655 ORTHO05D004065 4.9e-146 522.7 895 40.6
Lalb_Chr06g0175811 Lupinus albus HOM05D003655 ORTHO05D004065 6.7e-143 512.3 884 39.9
AUR62023138 Chenopodium quinoa HOM05D003655 ORTHO05D004065 1.1e-142 511.5 866 41.6
TPR.G14089 Trifolium pratense HOM05D003655 ORTHO05D004065 1.9e-142 510.8 983 40.4
EL10Ac2g04412 Beta vulgaris HOM05D003655 ORTHO05D004065 2.5e-142 510.4 883 40.9
Cpa.g.sc108.55 Carica papaya HOM05D003655 ORTHO05D004065 9.6e-142 508.4 566 54.6
Sed0015855 Sechium edule HOM05D003655 ORTHO05D004065 2.1e-141 507.3 878 40.4
Ca_04156_v3 Cicer arietinum L. HOM05D003655 ORTHO05D004065 2.6e-139 500.4 566 53.5
GSVIVG01032423001 Vitis vinifera HOM05D003655 ORTHO05D004065 5.8e-139 499.2 733 45.2
AUR62009456 Chenopodium quinoa HOM05D003655 ORTHO05D004065 7.6e-139 498.8 895 41.1
Ah.10g038310 Amaranthus hybridus HOM05D003655 ORTHO05D004065 2.2e-138 497.3 883 40.3
PSO832G3537 Papaver somniferum HOM05D003655 ORTHO05D004065 6.5e-138 495.7 939 38.1
Lsat_1_v5_gn_2_91520 Lactuca sativa HOM05D003655 ORTHO05D004065 4.3e-134 483.0 811 41.2
HanXRQChr07g0198951 Helianthus annuus HOM05D003655 ORTHO05D004065 1.6e-133 481.1 828 42.9
Hma1.2p1_1291F.1_g273550 Hydrangea macrophylla HOM05D003655 ORTHO05D004065 2.8e-133 480.3 818 39.7
TAR629G1826 Trochodendron aralioides HOM05D003655 ORTHO05D004065 4.8e-133 479.6 915 39.9
ATR0568G013 Amborella trichopoda HOM05D003655 ORTHO05D004065 4.1e-132 476.5 887 39.8
PSO063G4513 Papaver somniferum HOM05D003655 ORTHO05D004065 7.6e-131 472.2 884 38.7
Aa31LG2G4980 Aethionema arabicum HOM05D003655 ORTHO05D004065 1.7e-130 471.1 853 38.1
THA.LOC104823948 Tarenaya hassleriana HOM05D003655 ORTHO05D004065 1.7e-130 471.1 893 41.0
AT3G27700 Arabidopsis thaliana HOM05D003655 ORTHO05D004065 2.9e-130 470.3 829 40.9
Carub.0005s0625 Capsella rubella HOM05D003655 ORTHO05D004065 1.9e-129 467.6 833 40.8
THA.LOC104805377 Tarenaya hassleriana HOM05D003655 ORTHO05D004065 2.5e-129 467.2 827 39.8
CARHR149170 Cardamine hirsuta HOM05D003655 ORTHO05D004065 4.6e-128 463.0 888 39.1
HanXRQChr14g0450511 Helianthus annuus HOM05D003655 ORTHO05D004065 4.6e-128 463.0 860 41.9
AL5G17140 Arabidopsis lyrata HOM05D003655 ORTHO05D004065 1.3e-127 461.5 830 40.8
FAN05G1583 Fragaria x ananassa HOM05D003655 ORTHO05D004065 2.3e-127 460.7 688 41.6
Gohir.D11G070750 Gossypium hirsutum HOM05D003655 ORTHO05D004065 1.4e-124 451.4 873 39.3
unitig_0.g1601 Utricularia gibba HOM05D003655 ORTHO05D004065 5.3e-124 449.5 859 40.0
Thhalv10003632m.g Eutrema salsugineum HOM05D003655 ORTHO05D004065 6.9e-124 449.1 872 39.0
Sp2g16820 Schrenkiella parvula HOM05D003655 ORTHO05D004065 9.0e-124 448.7 894 40.5
unitig_748.g6986 Utricularia gibba HOM05D003655 ORTHO05D004065 3.4e-123 446.8 894 38.0
CDE06G2242 Ceratophyllum demersum HOM05D003655 ORTHO05D004065 1.9e-121 441.0 860 38.0
Aa31LG2G4970 Aethionema arabicum HOM05D003655 ORTHO05D004065 6.1e-120 436.0 835 39.2
BraA06t27015Z Brassica rapa HOM05D003655 ORTHO05D004065 2.3e-119 434.1 825 40.1
A06p40940 Brassica napus HOM05D003655 ORTHO05D004065 8.8e-119 432.2 886 38.6
Ah.16g100890 Amaranthus hybridus HOM05D003655 ORTHO05D004065 9.7e-118 428.7 855 37.8
C07p36880 Brassica napus HOM05D003655 ORTHO05D004065 2.8e-117 427.2 884 40.3
BolC7t44200H Brassica oleracea HOM05D003655 ORTHO05D004065 2.8e-117 427.2 884 40.3
Aqoxy3G01151 Aquilegia oxysepala HOM05D003655 ORTHO05D004065 5.3e-116 422.9 569 49.2
CiPaw.04G027900 Carya illinoinensis HOM05D003655 ORTHO05D004065 2.5e-113 414.1 491 50.1
A02p35600 Brassica napus HOM05D003655 ORTHO05D004065 2.1e-112 411.0 868 38.7
BraA02t08562Z Brassica rapa HOM05D003655 ORTHO05D004065 7.9e-112 409.1 868 38.4
BolC2t11504H Brassica oleracea HOM05D003655 ORTHO05D004065 6.7e-111 406.0 889 37.2
BcaC03g17479 Brassica carinata HOM05D003655 ORTHO05D004065 9.7e-110 402.1 887 37.2
C02p54430 Brassica napus HOM05D003655 ORTHO05D004065 1.7e-109 401.4 889 37.3
HanXRQChr09g0255101 Helianthus annuus HOM05D003655 ORTHO05D004065 2.2e-109 401.0 850 36.0
BcaB07g30148 Brassica carinata HOM05D003655 ORTHO05D004065 1.1e-108 398.7 888 37.4
Actinidia06004 Actinidia chinensis HOM05D003655 ORTHO05D004065 1.8e-108 397.9 550 47.6
Actinidia39401 Actinidia chinensis HOM05D003655 ORTHO05D004065 3.8e-106 390.2 893 35.6
Os04g0394300 Oryza sativa ssp. japonica HOM05D003655 ORTHO05D004065 9.7e-102 375.6 770 35.8
Zm00001eb085110 Zea mays HOM05D003655 ORTHO05D004065 2.7e-96 357.5 822 33.7
SEGI_17646 Sequoiadendron giganteum HOM05D003655 ORTHO05D004065 5.7e-94 349.7 978 32.6
BcaC06g30963 Brassica carinata HOM05D003655 ORTHO05D004065 9.8e-94 349.0 547 46.6
Lsat_1_v5_gn_4_183501 Lactuca sativa HOM05D003655 ORTHO05D004065 1.3e-90 338.6 765 35.3
PGR083G1229 Punica granatum HOM05D003655 ORTHO05D004065 9.4e-89 332.4 840 31.9
CDE04G0669 Ceratophyllum demersum HOM05D003655 ORTHO05D004065 3.0e-87 327.4 814 34.5
HPP92_000306 Vanilla planifolia HOM05D003655 ORTHO05D004065 5.2e-87 326.6 470 44.0
Gorai.007G075900 Gossypium raimondii HOM05D003655 ORTHO05D004065 3.7e-85 320.5 402 47.5
Gohir.A11G066766 Gossypium hirsutum HOM05D003655 ORTHO05D004065 6.3e-85 319.7 416 47.4
Sopen02g031230 Solanum pennellii HOM05D003655 ORTHO05D004065 5.7e-78 296.6 243 67.1
SEGI_07755 Sequoiadendron giganteum HOM05D003655 ORTHO05D004065 4.6e-75 287.0 904 31.0
Mapoly0078s0024 Marchantia polymorpha HOM05D003655 ORTHO05D004065 1.1e-73 282.3 972 31.9
Medtr2g449870 Medicago truncatula HOM05D003655 ORTHO05D004065 8.0e-72 276.2 362 47.5
Atru.chr6.2366 Acer truncatum HOM05D003655 ORTHO05D004065 8.9e-71 272.7 435 40.7
Actinidia16938 Actinidia chinensis HOM05D003655 ORTHO05D004065 9.8e-70 269.2 333 47.4
Pp3c2_21410 Physcomitrium patens HOM05D003655 ORTHO05D004065 1.8e-63 248.4 740 30.8
Pp3c2_22950 Physcomitrium patens HOM05D003655 ORTHO05D004065 4.0e-63 247.3 774 30.2
Atru.chr6.2365 Acer truncatum HOM05D003655 ORTHO05D004065 6.4e-61 240.0 258 50.0
Pp3c1_17760 Physcomitrium patens HOM05D003655 ORTHO05D004065 1.4e-60 238.8 810 29.9
SMO367G0495 Selaginella moellendorffii HOM05D003655 ORTHO05D004065 1.6e-59 235.3 694 32.3
Nn3g16761 Nelumbo nucifera HOM05D003655 ORTHO05D004065 1.4e-55 222.2 763 30.8
SHI22312 Sapria himalayana HOM05D003655 ORTHO05D004065 4.6e-51 207.2 316 46.2
SHI22307 Sapria himalayana HOM05D003655 ORTHO05D004065 1.5e-46 192.2 263 46.4
Sopen01g024710 Solanum pennellii HOM05D003655 ORTHO05D004065 3.4e-46 191.0 196 56.6
PSO017G6373 Papaver somniferum HOM05D003655 ORTHO05D004065 1.1e-44 186.0 332 34.9
Prupe.3G289600 Prunus persica HOM05D003655 ORTHO05D004065 2.5e-41 174.9 157 63.1
Atru.chr6.2272 Acer truncatum HOM05D003655 ORTHO05D004065 4.8e-40 170.6 196 49.5
Haze_14709 Corylus avellana HOM05D003655 ORTHO05D004065 5.3e-39 167.2 111 66.7
Peaxi162Scf00417g00004 Petunia axillaris HOM05D003655 ORTHO05D004065 3.8e-37 161.0 138 62.3
Sopen01g024690 Solanum pennellii HOM05D000006 ORTHO05D000695 6.0e-35 153.7 125 67.2
Solyc01g058690.1 Solanum lycopersicum HOM05D003655 ORTHO05D004065 1.8e-34 152.1 127 65.4
CiPaw.04G028000 Carya illinoinensis HOM05D003655 ORTHO05D004065 1.1e-33 149.4 164 53.0
Pp3c1_20440 Physcomitrium patens HOM05D003655 ORTHO05D004065 2.9e-29 134.8 569 27.4
Cfa007935 Carpinus fangiana HOM05D003655 ORTHO05D004065 1.1e-28 132.9 103 58.3
Cpa.g.sc108.56 Carica papaya HOM05D003655 ORTHO05D004065 2.4e-28 131.7 185 41.6
Medtr2g449950 Medicago truncatula HOM05D003655 ORTHO05D004065 4.0e-23 114.4 118 54.2
Ca_06248_v3 Cicer arietinum L. HOM05D003655 ORTHO05D004065 3.4e-22 111.3 152 42.1
CBR_g4653 Chara braunii HOM05D003655 ORTHO05D004065 6.3e-16 90.5 197 34.0
Actinidia25101 Actinidia chinensis HOM05D003655 ORTHO05D004065 1.7e-13 82.4 91 51.6
Atru.chr6.2364 Acer truncatum HOM05D003655 ORTHO05D004065 1.4e-12 79.3 85 64.7
Medtr2g449970 Medicago truncatula HOM05D003655 ORTHO05D004065 3.6e-11 74.7 53 67.9
Gohir.A11G066633 Gossypium hirsutum HOM05D003655 ORTHO05D004065 3.7e-08 64.7 230 34.8
CBR_g57010 Chara braunii HOM05D003655 ORTHO05D004065 6.3e-08 63.9 105 34.3
Ca_31040_v3 Cicer arietinum L. HOM05D003655 ORTHO05D004065 2.0e-06 58.9 106 33.0
Ca_29533_v3 Cicer arietinum L. HOM05D003655 ORTHO05D004065 5.9e-06 57.4 46 63.0


User provided reference genes

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