Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0006780g0010 Nicotiana tabacum HOM05D004552 ORTHO05D005501 7.1e-202 707.2 400 100.0
Nitab4.5_0008076g0010 Nicotiana tabacum HOM05D004552 ORTHO05D005501 2.8e-190 668.7 400 92.0
Nitab4.5_0001952g0150 Nicotiana tabacum HOM05D004552 ORTHO05D005501 5.9e-172 607.8 400 86.8
Nitab4.5_0005206g0040 Nicotiana tabacum HOM05D004552 ORTHO05D005501 1.3e-171 606.7 400 87.5
Sopen02g031920 Solanum pennellii HOM05D004552 ORTHO05D005501 1.4e-170 603.2 403 86.6
CAN.G525.45 Capsicum annuum HOM05D004552 ORTHO05D005501 4.2e-170 601.7 403 84.4
Solyc02g087180.4 Solanum lycopersicum HOM05D004552 ORTHO05D005501 3.9e-168 595.1 401 85.5
Peaxi162Scf00569g00015 Petunia axillaris HOM05D004552 ORTHO05D005501 2.4e-165 585.9 403 83.9
Solyc04g014240.1 Solanum lycopersicum HOM05D004552 ORTHO05D005501 6.5e-163 577.8 403 83.9
CAN.G206.55 Capsicum annuum HOM05D004552 ORTHO05D005501 1.4e-162 576.6 403 83.6
Sopen04g006350 Solanum pennellii HOM05D004552 ORTHO05D005501 4.2e-162 575.1 403 83.6
Dinv37242 Davidia involucrata HOM05D004552 ORTHO05D005501 1.6e-145 520.0 412 73.8
Oeu029550.1 Olea europaea HOM05D004552 ORTHO05D005501 1.2e-143 513.8 412 74.8
Actinidia19722 Actinidia chinensis HOM05D004552 ORTHO05D005501 1.7e-142 510.0 412 70.6
PGSC0003DMG400000510 Solanum tuberosum HOM05D004552 ORTHO05D005501 1.1e-141 507.3 326 87.1
Rhsim10G0168100 Rhododendron simsii HOM05D004552 ORTHO05D005501 2.9e-139 499.2 408 70.8
MSTRG.16520 Avicennia marina HOM05D004552 ORTHO05D005501 6.5e-139 498.0 413 71.9
Rhsim11G0041500 Rhododendron simsii HOM05D004552 ORTHO05D005501 5.5e-138 495.0 408 70.3
Oeu026072.1 Olea europaea HOM05D004552 ORTHO05D005501 1.0e-136 490.7 410 72.2
Rhsim11G0041800 Rhododendron simsii HOM05D004552 ORTHO05D005501 1.1e-133 480.7 406 69.2
Cc00_g23990 Coffea canephora HOM05D004552 ORTHO05D005501 9.2e-133 477.6 412 70.6
CSS0033785 Camellia sinensis var. sinensis HOM05D004552 ORTHO05D005501 5.6e-130 468.4 412 67.7
TWI53G0358 Tripterygium wilfordii HOM05D004552 ORTHO05D005501 1.0e-128 464.2 421 68.6
SalBow4G1233 Salvia bowleyana HOM05D004552 ORTHO05D005501 5.2e-128 461.8 404 67.8
Thecc.05G052700 Theobroma cacao HOM05D004552 ORTHO05D005501 7.5e-127 458.0 418 67.9
TAR369G0596 Trochodendron aralioides HOM05D004552 ORTHO05D005501 2.2e-126 456.4 413 67.8
HanXRQChr05g0156781 Helianthus annuus HOM05D004552 ORTHO05D005501 6.4e-126 454.9 404 67.1
DCAR_009290 Daucus carota HOM05D004552 ORTHO05D005501 8.3e-126 454.5 412 67.0
PGR004G2024 Punica granatum HOM05D004552 ORTHO05D005501 1.4e-125 453.8 411 66.7
Migut.K00511 Erythranthe guttata HOM05D004552 ORTHO05D005501 7.0e-125 451.4 409 68.7
ClCG04G008790 Citrullus lanatus HOM05D004552 ORTHO05D005501 2.0e-124 449.9 410 67.3
Lsat_1_v5_gn_5_8941 Lactuca sativa HOM05D004552 ORTHO05D005501 2.0e-124 449.9 402 66.4
QL07p045485 Quercus lobata HOM05D004552 ORTHO05D005501 1.7e-123 446.8 412 67.5
Hund08942 Selenicereus undatus HOM05D004552 ORTHO05D005501 5.0e-123 445.3 411 65.5
DCAR_002493 Daucus carota HOM05D004552 ORTHO05D005501 5.6e-122 441.8 413 65.9
Duzib106G1297 Durio zibethinus HOM05D004552 ORTHO05D005501 5.6e-122 441.8 412 68.2
THA.LOC104823245 Tarenaya hassleriana HOM05D004552 ORTHO05D005501 2.1e-121 439.9 424 64.6
ECA246G2681 Erigeron canadensis HOM05D003206 ORTHO05D005207 6.2e-121 438.3 401 65.3
ClCG10G016170 Citrullus lanatus HOM05D004552 ORTHO05D005501 1.4e-120 437.2 403 67.0
EL10Ac7g16819 Beta vulgaris HOM05D004552 ORTHO05D005501 3.1e-120 436.0 409 62.8
CsaV3_4G024350 Cucumis sativus L. HOM05D004552 ORTHO05D005501 4.0e-120 435.6 407 67.3
CiPaw.09G181100 Carya illinoinensis HOM05D004552 ORTHO05D005501 5.2e-120 435.3 418 68.2
Ciclev10011831m.g Citrus clementina HOM05D004552 ORTHO05D005501 1.2e-119 434.1 416 63.9
Haze_20666 Corylus avellana HOM05D004552 ORTHO05D005501 5.8e-119 431.8 410 68.5
unitig_899.g15236 Utricularia gibba HOM05D004552 ORTHO05D005501 7.5e-119 431.4 410 64.4
AUR62025361 Chenopodium quinoa HOM05D004552 ORTHO05D005501 2.2e-118 429.9 409 63.6
Sed0010830 Sechium edule HOM05D004552 ORTHO05D005501 2.9e-118 429.5 408 65.2
MELO3C014263.2 Cucumis melo HOM05D004552 ORTHO05D005501 3.7e-118 429.1 410 66.3
Cfa017496 Carpinus fangiana HOM05D004552 ORTHO05D005501 2.4e-117 426.4 408 64.7
Ah.14g084480 Amaranthus hybridus HOM05D004552 ORTHO05D005501 5.4e-117 425.2 407 61.7
AUR62028362 Chenopodium quinoa HOM05D004552 ORTHO05D005501 9.2e-117 424.5 409 63.1
Atru.chr8.2543 Acer truncatum HOM05D004552 ORTHO05D005501 3.5e-116 422.5 419 63.0
Potri.016G084200 Populus trichocarpa HOM05D004552 ORTHO05D005501 3.5e-116 422.5 401 65.1
Manes.09G079900 Manihot esculenta HOM05D004552 ORTHO05D005501 1.9e-114 416.8 418 62.9
Nn1g07079 Nelumbo nucifera HOM05D004552 ORTHO05D005501 3.3e-114 416.0 426 63.4
arahy.Tifrunner.gnm1.ann1.CZIV0N Arachis hypogaea HOM05D004552 ORTHO05D005501 4.3e-114 415.6 405 65.4
arahy.Tifrunner.gnm1.ann1.URH0Q0 Arachis hypogaea HOM05D004552 ORTHO05D005501 9.5e-114 414.5 406 65.0
RcHm_v2.0_Chr1g0360161 Rosa chinensis HOM05D004552 ORTHO05D005501 1.6e-113 413.7 419 63.2
arahy.Tifrunner.gnm1.ann1.LN9G9C Arachis hypogaea HOM05D004552 ORTHO05D005501 2.1e-113 413.3 405 65.2
arahy.Tifrunner.gnm1.ann1.6MTV2V Arachis hypogaea HOM05D004552 ORTHO05D005501 2.8e-113 412.9 405 65.2
PSO832G0086 Papaver somniferum HOM05D004552 ORTHO05D005501 6.2e-113 411.8 419 62.1
COL.COLO4_27097 Corchorus olitorius HOM05D004552 ORTHO05D005501 1.1e-112 411.0 337 70.6
Lj3g0026232 Lotus japonicus HOM05D004552 ORTHO05D005501 3.1e-112 409.5 410 62.0
Lj5g0019559 Lotus japonicus HOM05D004552 ORTHO05D005501 3.1e-112 409.5 410 62.0
Gohir.A03G063400 Gossypium hirsutum HOM05D004552 ORTHO05D005501 5.2e-112 408.7 353 67.4
PSO210G6420 Papaver somniferum HOM05D004552 ORTHO05D005501 5.2e-112 408.7 417 62.8
Medtr8g075790 Medicago truncatula HOM05D004552 ORTHO05D005501 8.9e-112 407.9 409 62.3
Ca_22379_v3 Cicer arietinum L. HOM05D004552 ORTHO05D005501 2.6e-111 406.4 409 62.1
Glyma.08G287300 Glycine max HOM05D004552 ORTHO05D005501 4.4e-111 405.6 400 63.0
Gorai.003G108400 Gossypium raimondii HOM05D004552 ORTHO05D005501 4.4e-111 405.6 353 67.4
SGA_v2.0_scaffold204G41624 Striga asiatica HOM05D004552 ORTHO05D005501 5.8e-111 405.2 411 65.2
Cc03_g15870 Coffea canephora HOM05D004552 ORTHO05D005501 1.3e-110 404.1 412 63.6
Sp6g39730 Schrenkiella parvula HOM05D004552 ORTHO05D005501 1.7e-110 403.7 427 63.5
Gohir.D03G102900 Gossypium hirsutum HOM05D004552 ORTHO05D005501 2.2e-110 403.3 353 67.1
Medtr6g089780 Medicago truncatula HOM05D004552 ORTHO05D005501 2.2e-110 403.3 409 61.4
Lj4g0012826 Lotus japonicus HOM05D004552 ORTHO05D005501 2.9e-110 402.9 410 61.5
CARHR210480 Cardamine hirsuta HOM05D004552 ORTHO05D005501 3.7e-110 402.5 425 63.1
Ca_19605_v3 Cicer arietinum L. HOM05D004552 ORTHO05D005501 4.9e-110 402.1 409 62.1
CANSAT56G3582 Cannabis sativa HOM05D004552 ORTHO05D005501 6.4e-110 401.7 404 65.3
RcHm_v2.0_Chr1g0361081 Rosa chinensis HOM05D004552 ORTHO05D005501 1.1e-109 401.0 408 62.7
VMungo0251G2800 Vigna mungo HOM05D004552 ORTHO05D005501 1.1e-109 401.0 397 61.2
Phvul.003G261400 Phaseolus vulgaris HOM05D004552 ORTHO05D005501 7.1e-109 398.3 402 63.2
TPR.G33503 Trifolium pratense HOM05D004552 ORTHO05D005501 7.1e-109 398.3 409 61.9
Thhalv10013588m.g Eutrema salsugineum HOM05D004552 ORTHO05D005501 2.7e-108 396.4 434 60.1
BcaC06g32015 Brassica carinata HOM05D004552 ORTHO05D005501 3.5e-108 396.0 418 62.4
Manes.08G002200 Manihot esculenta HOM05D004552 ORTHO05D005501 1.0e-107 394.4 413 63.0
Prupe.2G197600 Prunus persica HOM05D004552 ORTHO05D005501 3.9e-107 392.5 410 62.0
Sc07g0006230 Simmondsia chinensis HOM05D004552 ORTHO05D005501 5.1e-107 392.1 412 61.9
C09p73810 Brassica napus HOM05D004552 ORTHO05D005501 6.6e-107 391.7 425 61.4
BolC9t60115H Brassica oleracea HOM05D004552 ORTHO05D005501 6.6e-107 391.7 425 61.4
Glyma.06G188800 Glycine max HOM05D004552 ORTHO05D005501 6.6e-107 391.7 400 61.2
FAN03G3426 Fragaria x ananassa HOM05D004552 ORTHO05D005501 1.2e-105 387.5 420 59.3
Lalb_Chr05g0229841 Lupinus albus HOM05D004552 ORTHO05D005501 1.2e-105 387.5 410 60.7
Psat7g019080 Pisum sativum HOM05D004552 ORTHO05D005501 1.6e-105 387.1 431 59.6
Glyma.13G067700 Glycine max HOM05D004552 ORTHO05D005501 2.1e-105 386.7 400 61.2
FvH4_7g16920 Fragaria vesca HOM05D004552 ORTHO05D005501 8.1e-105 384.8 419 59.4
AT5G02850 Arabidopsis thaliana HOM05D004552 ORTHO05D005501 1.8e-104 383.6 426 60.8
FAN01G0370 Fragaria x ananassa HOM05D004552 ORTHO05D005501 4.0e-104 382.5 419 59.2
Aa31LG1G22060 Aethionema arabicum HOM05D004552 ORTHO05D005501 2.0e-103 380.2 428 60.0
A10p32880 Brassica napus HOM05D004552 ORTHO05D005501 2.0e-103 380.2 427 60.4
FAN06G4506 Fragaria x ananassa HOM05D004552 ORTHO05D005501 4.4e-103 379.0 419 58.9
AL6G12120 Arabidopsis lyrata HOM05D004552 ORTHO05D005501 3.7e-102 375.9 428 59.6
FAN06G3324 Fragaria x ananassa HOM05D004552 ORTHO05D005501 1.6e-100 370.5 405 58.8
Manes.09G080009 Manihot esculenta HOM05D004552 ORTHO05D005501 1.6e-100 370.5 348 63.8
CDE04G3741 Ceratophyllum demersum HOM05D004552 ORTHO05D005501 2.1e-100 370.2 412 57.3
TPR.G27980 Trifolium pratense HOM05D004552 ORTHO05D005501 6.0e-100 368.6 333 62.5
Lj6g0002066 Lotus japonicus HOM05D004552 ORTHO05D005501 3.9e-99 365.9 410 56.8
FvH4_7g17650 Fragaria vesca HOM05D004552 ORTHO05D005501 6.6e-99 365.2 408 58.3
Carub.0006s0165 Capsella rubella HOM05D004552 ORTHO05D005501 1.1e-98 364.4 431 58.2
Sabra16G0091200 Salix brachista HOM05D004552 ORTHO05D005501 1.9e-98 363.6 327 65.1
Aqoxy4G02198 Aquilegia oxysepala HOM05D004552 ORTHO05D005501 7.3e-98 361.7 435 58.2
vmacro04719 Vaccinium macrocarpon HOM05D004552 ORTHO05D005501 2.1e-97 360.1 324 68.2
SHI12593 Sapria himalayana HOM05D004552 ORTHO05D005501 1.7e-94 350.5 402 57.5
FAN03G1811 Fragaria x ananassa HOM05D004552 ORTHO05D005501 2.2e-94 350.1 407 56.0
Psat4g100360 Pisum sativum HOM05D004552 ORTHO05D005501 3.8e-94 349.4 351 63.8
arahy.Tifrunner.gnm1.ann1.52IM1F Arachis hypogaea HOM05D004552 ORTHO05D005501 5.4e-93 345.5 316 67.1
Lj6g0014683 Lotus japonicus HOM05D004552 ORTHO05D005501 5.4e-93 345.5 338 59.8
Eucgr.J03059 Eucalyptus grandis HOM05D004552 ORTHO05D005501 9.3e-93 344.7 439 55.6
FAN06G0991 Fragaria x ananassa HOM05D004552 ORTHO05D005501 9.3e-93 344.7 406 58.9
SGA_v2.0_scaffold94G28661 Striga asiatica HOM05D004552 ORTHO05D005501 4.6e-92 342.4 333 67.3
MBI18_g25517_MAGBIO Magnolia biondii HOM05D004552 ORTHO05D005501 1.7e-86 323.9 349 59.6
Lj6g0013650 Lotus japonicus HOM05D004552 ORTHO05D005501 4.9e-86 322.4 410 54.6
PSO675G1725 Papaver somniferum HOM05D004552 ORTHO05D005501 1.5e-82 310.8 375 51.2
HPP92_012944 Vanilla planifolia HOM05D004552 ORTHO05D005501 3.9e-75 286.2 341 53.1
Os09g0540500 Oryza sativa ssp. japonica HOM05D004552 ORTHO05D005501 2.1e-73 280.4 421 47.7
ATR0950G002 Amborella trichopoda HOM05D004552 ORTHO05D005501 2.0e-71 273.9 358 53.9
ATR0594G066 Amborella trichopoda HOM05D004552 ORTHO05D005501 5.8e-71 272.3 356 54.2
RhsimUnG0119000 Rhododendron simsii HOM05D004552 ORTHO05D005501 7.1e-69 265.4 238 66.4
Zm00001eb103820 Zea mays HOM05D004552 ORTHO05D005501 2.3e-67 260.4 411 46.2
SEGI_01207 Sequoiadendron giganteum HOM05D004552 ORTHO05D005501 1.9e-66 257.3 415 46.5
FAN01G0473 Fragaria x ananassa HOM05D004552 ORTHO05D005501 7.2e-61 238.8 398 47.0
CSS0042772 Camellia sinensis var. sinensis HOM05D004552 ORTHO05D005501 2.5e-58 230.3 229 60.3
CDE07G0444 Ceratophyllum demersum HOM05D004552 ORTHO05D005501 7.4e-58 228.8 307 51.5
A03p00930 Brassica napus HOM05D004552 ORTHO05D005501 4.2e-53 213.0 207 61.8
C03p01200 Brassica napus HOM05D004552 ORTHO05D005501 5.3e-48 196.1 273 52.7
BolC3t12680H Brassica oleracea HOM05D004552 ORTHO05D005501 5.3e-48 196.1 273 52.7
THA.LOC104827455 Tarenaya hassleriana HOM05D004552 ORTHO05D005501 6.9e-48 195.7 212 59.4
PGSC0003DMG400023633 Solanum tuberosum HOM05D004552 ORTHO05D005501 2.6e-47 193.7 222 57.7
FvH4_6g20640 Fragaria vesca HOM05D004552 ORTHO05D005501 1.3e-46 191.4 244 49.6
Mapoly0007s0084 Marchantia polymorpha HOM05D004552 ORTHO05D005501 2.2e-46 190.7 374 43.0
BcaB01g05872 Brassica carinata HOM05D004552 ORTHO05D005501 6.5e-46 189.1 421 41.3
SEGI_11500 Sequoiadendron giganteum HOM05D004552 ORTHO05D005501 6.5e-46 189.1 324 46.9
Actinidia11233 Actinidia chinensis HOM05D004552 ORTHO05D005501 7.9e-44 182.2 337 43.9
FAN14G1867 Fragaria x ananassa HOM05D004552 ORTHO05D005501 1.0e-43 181.8 172 57.0
Pp3c14_11490 Physcomitrium patens HOM05D004552 ORTHO05D005501 3.3e-42 176.8 348 40.2
AagrBONN_evm.TU.Sc2ySwM_362.1766 Anthoceros agrestis HOM05D004552 ORTHO05D005501 4.1e-40 169.9 260 41.2
Lsat_1_v5_gn_8_95200 Lactuca sativa HOM05D004552 ORTHO05D005501 4.7e-36 156.4 102 78.4
BraA03t09475Z Brassica rapa HOM05D004552 ORTHO05D005501 1.5e-29 134.8 200 47.0
VMungo0647G0506 Vigna mungo HOM05D004552 ORTHO05D005501 3.6e-28 130.2 105 67.6
BraA10t45325Z Brassica rapa HOM05D001414 ORTHO05D000619 9.8e-26 122.1 146 61.0
CBR_g38095 Chara braunii HOM05D004552 ORTHO05D005501 8.3e-25 119.0 246 33.3
Lj3E543T1 Lonicera japonica HOM05D004552 ORTHO05D005501 8.5e-22 109.0 113 68.1
AagrBONN_evm.TU.Sc2ySwM_344.2458 Anthoceros agrestis HOM05D004552 ORTHO05D005501 7.0e-16 89.4 216 29.6
Nitab4.5_0006780g0020 Nicotiana tabacum HOM05D004552 ORTHO05D005501 1.1e-13 82.0 43 97.7
Lsat_1_v5_gn_8_95180 Lactuca sativa HOM05D004552 ORTHO05D005501 1.8e-11 74.7 71 59.2
MCO09G463 Micromonas commoda HOM05D004552 ORTHO05D005501 1.3e-06 58.5 192 38.0


User provided reference genes

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