Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0006756g0010 Nicotiana tabacum HOM05D004814 ORTHO05D005778 1.0e-97 360.1 191 100.0
Nitab4.5_0003491g0010 Nicotiana tabacum HOM05D004814 ORTHO05D005778 4.7e-95 351.3 191 97.4
PGSC0003DMG400014378 Solanum tuberosum HOM05D004814 ORTHO05D005778 6.0e-90 334.3 191 92.1
Sopen10g001990 Solanum pennellii HOM05D004814 ORTHO05D005778 1.5e-88 329.7 191 91.1
Solyc10g006030.3 Solanum lycopersicum HOM05D004814 ORTHO05D005778 2.1e-87 325.9 191 90.6
CAN.G492.31 Capsicum annuum HOM05D004814 ORTHO05D005778 1.3e-84 316.6 191 88.0
Cc05_g14790 Coffea canephora HOM05D004814 ORTHO05D005778 4.2e-67 258.5 191 72.8
Dinv10318 Davidia involucrata HOM05D004814 ORTHO05D005778 5.4e-67 258.1 198 72.7
DCAR_013223 Daucus carota HOM05D004814 ORTHO05D005778 2.7e-66 255.8 191 73.8
Dinv40842 Davidia involucrata HOM05D004814 ORTHO05D005778 6.0e-66 254.6 199 70.9
Oeu049351.1 Olea europaea HOM05D004814 ORTHO05D005778 2.3e-65 252.7 190 72.6
Lsat_1_v5_gn_9_90400 Lactuca sativa HOM05D004814 ORTHO05D005778 5.1e-65 251.5 192 72.9
Hma1.2p1_0889F.1_g232870 Hydrangea macrophylla HOM05D004814 ORTHO05D005778 5.6e-64 248.1 209 67.9
Oeu057089.1 Olea europaea HOM05D004814 ORTHO05D005778 5.6e-64 248.1 190 71.1
HanXRQChr03g0061321 Helianthus annuus HOM05D004814 ORTHO05D005778 2.4e-62 242.7 191 70.7
TAR629G3287 Trochodendron aralioides HOM05D004814 ORTHO05D005778 3.1e-62 242.3 207 66.7
MSTRG.14478 Avicennia marina HOM05D004814 ORTHO05D005778 4.0e-62 241.9 187 71.1
CSS0025876 Camellia sinensis var. sinensis HOM05D004814 ORTHO05D005778 1.5e-61 240.0 202 69.3
HanXRQChr13g0408121 Helianthus annuus HOM05D004814 ORTHO05D005778 9.9e-61 237.3 189 68.3
CANSAT11G0174 Cannabis sativa HOM05D004814 ORTHO05D005778 1.7e-60 236.5 199 66.8
GSVIVG01014640001 Vitis vinifera HOM05D004814 ORTHO05D005778 2.9e-60 235.7 203 67.0
CiPaw.12G136400 Carya illinoinensis HOM05D004814 ORTHO05D005778 1.9e-59 233.0 209 66.0
A03p38040 Brassica napus HOM05D004814 ORTHO05D005778 2.4e-59 232.6 190 67.4
Actinidia30418 Actinidia chinensis HOM05D004814 ORTHO05D005778 3.2e-59 232.3 199 67.8
SGA_v2.0_scaffold8G04398 Striga asiatica HOM05D004814 ORTHO05D005778 3.2e-59 232.3 190 67.9
A01p40420 Brassica napus HOM05D004814 ORTHO05D005778 4.2e-59 231.9 198 67.2
BraA01t04077Z Brassica rapa HOM05D004814 ORTHO05D005778 4.2e-59 231.9 198 67.2
AUR62017069 Chenopodium quinoa HOM05D004814 ORTHO05D005778 4.2e-59 231.9 196 69.4
TAR626G1431 Trochodendron aralioides HOM05D004814 ORTHO05D005778 4.2e-59 231.9 207 63.3
unitig_62.g23297 Utricularia gibba HOM05D004814 ORTHO05D005778 4.2e-59 231.9 193 66.3
MD03G1187000 Malus domestica HOM05D004814 ORTHO05D005778 5.5e-59 231.5 201 65.7
AUR62036421 Chenopodium quinoa HOM05D004814 ORTHO05D005778 9.3e-59 230.7 195 67.2
AUR62036427 Chenopodium quinoa HOM05D004814 ORTHO05D005778 9.3e-59 230.7 195 67.2
AUR62040646 Chenopodium quinoa HOM05D004814 ORTHO05D005778 9.3e-59 230.7 195 67.2
Sc16g0007970 Simmondsia chinensis HOM05D004814 ORTHO05D005778 9.3e-59 230.7 198 68.7
C03p46130 Brassica napus HOM05D004814 ORTHO05D005778 1.2e-58 230.3 193 67.4
BcaC01g04010 Brassica carinata HOM05D004814 ORTHO05D005778 1.6e-58 229.9 193 66.8
BolC3t16886H Brassica oleracea HOM05D004814 ORTHO05D005778 1.6e-58 229.9 193 66.8
RcHm_v2.0_Chr5g0054381 Rosa chinensis HOM05D004814 ORTHO05D005778 2.1e-58 229.6 196 66.3
Haze_09803 Corylus avellana HOM05D004814 ORTHO05D005778 2.7e-58 229.2 188 70.2
EL10Ac4g07605 Beta vulgaris HOM05D004814 ORTHO05D005778 3.5e-58 228.8 196 65.3
BcaNung05270 Brassica carinata HOM05D004814 ORTHO05D005778 3.5e-58 228.8 191 66.0
Gohir.D11G287000 Gossypium hirsutum HOM05D004814 ORTHO05D005778 3.5e-58 228.8 190 67.4
Gorai.007G310400 Gossypium raimondii HOM05D004814 ORTHO05D005778 3.5e-58 228.8 190 67.4
vmacro22713 Vaccinium macrocarpon HOM05D004814 ORTHO05D005778 3.5e-58 228.8 202 64.9
Atru.chr2.3664 Acer truncatum HOM05D004814 ORTHO05D005778 4.6e-58 228.4 194 69.1
BcaC05g29209 Brassica carinata HOM05D004814 ORTHO05D005778 6.0e-58 228.0 196 67.9
C05p54820 Brassica napus HOM05D004814 ORTHO05D005778 6.0e-58 228.0 196 67.9
FvH4_3g29500 Fragaria vesca HOM05D004814 ORTHO05D005778 6.0e-58 228.0 196 66.8
FAN11G3417 Fragaria x ananassa HOM05D004814 ORTHO05D005778 6.0e-58 228.0 196 66.8
Gohir.A11G276900 Gossypium hirsutum HOM05D004814 ORTHO05D005778 6.0e-58 228.0 190 66.8
Nn1g03216 Nelumbo nucifera HOM05D004814 ORTHO05D005778 6.0e-58 228.0 207 65.2
BolC5t34154H Brassica oleracea HOM05D004814 ORTHO05D005778 7.9e-58 227.6 196 67.9
Actinidia05019 Actinidia chinensis HOM05D004814 ORTHO05D005778 1.0e-57 227.3 199 65.8
BraA03t12957Z Brassica rapa HOM05D004814 ORTHO05D005778 1.0e-57 227.3 196 65.3
FAN25G3790 Fragaria x ananassa HOM05D004814 ORTHO05D005778 1.0e-57 227.3 192 67.2
QL08p004842 Quercus lobata HOM05D004814 ORTHO05D005778 1.0e-57 227.3 205 64.4
Cfa020215 Carpinus fangiana HOM05D004814 ORTHO05D005778 1.3e-57 226.9 209 63.6
ECA240G4731 Erigeron canadensis HOM05D001580 ORTHO05D001517 1.3e-57 226.9 147 78.9
FAN16G2593 Fragaria x ananassa HOM05D004814 ORTHO05D005778 1.3e-57 226.9 196 66.3
Rhsim06G0227300 Rhododendron simsii HOM05D004814 ORTHO05D005778 1.8e-57 226.5 203 64.0
Sp3g11290 Schrenkiella parvula HOM05D004814 ORTHO05D005778 2.3e-57 226.1 195 67.2
CARHR087710 Cardamine hirsuta HOM05D004814 ORTHO05D005778 3.0e-57 225.7 194 67.5
FAN21G1289 Fragaria x ananassa HOM05D004814 ORTHO05D005778 3.0e-57 225.7 196 66.3
TWI38G0785 Tripterygium wilfordii HOM05D004814 ORTHO05D005778 3.0e-57 225.7 206 64.6
AL3G24860 Arabidopsis lyrata HOM05D004814 ORTHO05D005778 3.9e-57 225.3 194 66.0
AT3G13120 Arabidopsis thaliana HOM05D004814 ORTHO05D005778 3.9e-57 225.3 194 66.0
MELO3C024899.2 Cucumis melo HOM05D004814 ORTHO05D005778 3.9e-57 225.3 211 63.0
Ah.04g166490 Amaranthus hybridus HOM05D004814 ORTHO05D005778 5.1e-57 224.9 194 66.5
Aqoxy4G02247 Aquilegia oxysepala HOM05D004814 ORTHO05D005778 5.1e-57 224.9 198 66.7
Gohir.D01G075300 Gossypium hirsutum HOM05D004814 ORTHO05D005778 6.7e-57 224.6 194 67.5
Gorai.002G098500 Gossypium raimondii HOM05D004814 ORTHO05D005778 6.7e-57 224.6 194 67.5
PSO675G8482 Papaver somniferum HOM05D004814 ORTHO05D005778 6.7e-57 224.6 208 63.0
Sed0017349 Sechium edule HOM05D004814 ORTHO05D005778 6.7e-57 224.6 202 64.9
TWI39G1010 Tripterygium wilfordii HOM05D004814 ORTHO05D005778 6.7e-57 224.6 207 64.7
arahy.Tifrunner.gnm1.ann1.CWZH2K Arachis hypogaea HOM05D004814 ORTHO05D005778 8.7e-57 224.2 209 63.2
BcaB06g25486 Brassica carinata HOM05D004814 ORTHO05D005778 8.7e-57 224.2 190 66.3
Gohir.A01G090000 Gossypium hirsutum HOM05D004814 ORTHO05D005778 8.7e-57 224.2 194 67.0
Manes.03G139872 Manihot esculenta HOM05D004814 ORTHO05D005778 8.7e-57 224.2 214 62.6
arahy.Tifrunner.gnm1.ann1.RG8M6K Arachis hypogaea HOM05D004814 ORTHO05D005778 1.1e-56 223.8 209 63.2
CsaV3_7G018640 Cucumis sativus L. HOM05D004814 ORTHO05D005778 1.5e-56 223.4 206 63.1
Ah.06g181280 Amaranthus hybridus HOM05D004814 ORTHO05D005778 1.9e-56 223.0 191 67.0
PSO541G0969 Papaver somniferum HOM05D004814 ORTHO05D005778 1.9e-56 223.0 208 62.5
arahy.Tifrunner.gnm1.ann1.0CA1AM Arachis hypogaea HOM05D004814 ORTHO05D005778 2.5e-56 222.6 209 62.7
BraA05t22442Z Brassica rapa HOM05D004814 ORTHO05D005778 4.3e-56 221.9 192 65.6
ClCG09G021040 Citrullus lanatus HOM05D004814 ORTHO05D005778 4.3e-56 221.9 209 64.6
Peaxi162Scf00900g00010 Petunia axillaris HOM05D004814 ORTHO05D005778 4.3e-56 221.9 191 66.0
PGR031G1774 Punica granatum HOM05D004814 ORTHO05D005778 4.3e-56 221.9 193 65.8
Thhalv10021566m.g Eutrema salsugineum HOM05D004814 ORTHO05D005778 5.6e-56 221.5 198 64.1
Sabra16G0239200 Salix brachista HOM05D004814 ORTHO05D005778 5.6e-56 221.5 213 61.0
Aa31LG8G330 Aethionema arabicum HOM05D004814 ORTHO05D005778 7.4e-56 221.1 199 64.8
arahy.Tifrunner.gnm1.ann1.X98J9H Arachis hypogaea HOM05D004814 ORTHO05D005778 9.6e-56 220.7 208 63.0
Ciclev10009615m.g Citrus clementina HOM05D004814 ORTHO05D005778 9.6e-56 220.7 191 66.5
Manes.15G061900 Manihot esculenta HOM05D004814 ORTHO05D005778 1.3e-55 220.3 213 61.5
Carub.0003s1246 Capsella rubella HOM05D004814 ORTHO05D005778 1.6e-55 219.9 197 65.0
Hund01909 Selenicereus undatus HOM05D004814 ORTHO05D005778 1.6e-55 219.9 194 63.9
A05p36420 Brassica napus HOM05D004814 ORTHO05D005778 2.1e-55 219.5 190 65.8
Potri.001G365600 Populus trichocarpa HOM05D004814 ORTHO05D005778 2.1e-55 219.5 206 59.7
Thecc.07G016800 Theobroma cacao HOM05D004814 ORTHO05D005778 2.1e-55 219.5 190 66.3
Glyma.08G327500 Glycine max HOM05D004814 ORTHO05D005778 2.8e-55 219.2 205 62.9
Sabra11G0087000 Salix brachista HOM05D004814 ORTHO05D005778 2.8e-55 219.2 211 59.7
Glyma.18G079900 Glycine max HOM05D004814 ORTHO05D005778 4.8e-55 218.4 204 62.3
Ca_20138_v3 Cicer arietinum L. HOM05D004814 ORTHO05D005778 1.8e-54 216.5 202 62.4
Lalb_Chr05g0211691 Lupinus albus HOM05D004814 ORTHO05D005778 1.8e-54 216.5 208 62.0
Duzib213G0234 Durio zibethinus HOM05D004814 ORTHO05D005778 3.1e-54 215.7 190 64.7
MD11G1202000 Malus domestica HOM05D004814 ORTHO05D005778 4.0e-54 215.3 198 62.6
Psat5g170120 Pisum sativum HOM05D004814 ORTHO05D005778 4.0e-54 215.3 199 63.8
Potri.011G092800 Populus trichocarpa HOM05D004814 ORTHO05D005778 4.0e-54 215.3 209 58.9
Eucgr.F03697 Eucalyptus grandis HOM05D004814 ORTHO05D005778 5.3e-54 214.9 195 65.1
Phvul.006G055300 Phaseolus vulgaris HOM05D004814 ORTHO05D005778 1.2e-53 213.8 206 61.7
Aa31LG10G250 Aethionema arabicum HOM05D004814 ORTHO05D005778 3.4e-53 212.2 195 63.6
THA.LOC104815700 Tarenaya hassleriana HOM05D004814 ORTHO05D005778 3.4e-53 212.2 200 63.0
THA.LOC104822735 Tarenaya hassleriana HOM05D004814 ORTHO05D005778 3.4e-53 212.2 195 64.1
Phvul.001G030600 Phaseolus vulgaris HOM05D004814 ORTHO05D005778 4.5e-53 211.8 206 61.7
COL.COLO4_09806 Corchorus olitorius HOM05D004814 ORTHO05D005778 5.8e-53 211.5 187 63.6
Prupe.4G239600 Prunus persica HOM05D004814 ORTHO05D005778 1.3e-52 210.3 201 62.7
TPR.G30737 Trifolium pratense HOM05D004814 ORTHO05D005778 1.3e-52 210.3 206 61.7
Medtr3g058430 Medicago truncatula HOM05D004814 ORTHO05D005778 1.7e-52 209.9 190 65.3
Actinidia05024 Actinidia chinensis HOM05D004814 ORTHO05D005778 2.9e-52 209.1 191 64.9
THA.LOC104810287 Tarenaya hassleriana HOM05D004814 ORTHO05D005778 2.9e-52 209.1 196 63.3
HPP92_020399 Vanilla planifolia HOM05D004814 ORTHO05D005778 8.4e-52 207.6 199 62.3
CSS0019029 Camellia sinensis var. sinensis HOM05D004814 ORTHO05D005778 1.4e-51 206.8 115 88.7
CDE10G1086 Ceratophyllum demersum HOM05D004814 ORTHO05D005778 2.1e-50 203.0 111 89.2
A01p40680 Brassica napus HOM05D004814 ORTHO05D005778 3.5e-50 202.2 193 62.7
Lj1P888T30 Lonicera japonica HOM05D004814 ORTHO05D005778 3.5e-50 202.2 103 96.1
ATR0624G087 Amborella trichopoda HOM05D004814 ORTHO05D005778 1.3e-49 200.3 103 95.1
Cpa.g.sc12.175 Carica papaya HOM05D004814 ORTHO05D005778 1.3e-49 200.3 103 95.1
VMungo0248G0001 Vigna mungo HOM05D004814 ORTHO05D005778 2.3e-49 199.5 103 93.2
C01p51960 Brassica napus HOM05D004814 ORTHO05D005778 1.1e-48 197.2 198 60.1
Os03g0196800 Oryza sativa ssp. japonica HOM05D004814 ORTHO05D005778 1.5e-48 196.8 112 83.0
Zm00001eb401060 Zea mays HOM05D004814 ORTHO05D005778 1.3e-47 193.7 178 60.1
Zm00001eb008100 Zea mays HOM05D004814 ORTHO05D005778 3.7e-47 192.2 199 58.3
BraA01t04102Z Brassica rapa HOM05D004814 ORTHO05D005778 4.8e-47 191.8 103 90.3
QL05p065674 Quercus lobata HOM05D004814 ORTHO05D005778 4.8e-47 191.8 116 82.8
MBI19_g45743_MAGBIO Magnolia biondii HOM05D004814 ORTHO05D005778 1.7e-44 183.3 99 88.9
QL05p065593 Quercus lobata HOM05D004814 ORTHO05D005778 8.5e-44 181.0 102 89.2
PSO832G2117 Papaver somniferum HOM05D004814 ORTHO05D005778 3.2e-43 179.1 208 55.8
MSTRG.13015 Avicennia marina HOM05D004814 ORTHO05D005778 1.0e-41 174.1 150 64.0
AagrBONN_evm.TU.Sc2ySwM_117.1321 Anthoceros agrestis HOM05D004814 ORTHO05D005778 3.3e-40 169.1 124 68.5
Mapoly0009s0107 Marchantia polymorpha HOM05D004814 ORTHO05D005778 2.8e-39 166.0 103 76.7
Pp3c8_18990 Physcomitrium patens HOM05D004814 ORTHO05D005778 8.2e-39 164.5 111 71.2
Pp3c24_19230 Physcomitrium patens HOM05D004814 ORTHO05D005778 1.1e-38 164.1 111 71.2
Pp3c20_8830 Physcomitrium patens HOM05D004814 ORTHO05D005778 2.0e-37 159.8 197 49.2
SEGI_32296 Sequoiadendron giganteum HOM05D004814 ORTHO05D005778 1.4e-35 153.7 101 73.3
CBR_g19640 Chara braunii HOM05D004814 ORTHO05D005778 2.3e-33 146.4 196 44.9
MCO07G521 Micromonas commoda HOM05D004814 ORTHO05D005778 4.1e-30 135.6 118 58.5
SMO228G0012 Selaginella moellendorffii HOM05D004814 ORTHO05D005778 5.3e-30 135.2 105 61.0
PRCOL_00000430 Prasinoderma coloniale HOM05D004814 ORTHO05D005778 1.1e-22 110.9 100 52.0
Cre03.g195650 Chlamydomonas reinhardtii HOM05D004814 ORTHO05D005778 2.9e-20 102.8 122 44.3
vmacro17432 Vaccinium macrocarpon HOM05D004814 ORTHO05D005778 1.2e-08 64.3 199 33.7


User provided reference genes

Program Settings