Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0006737g0050 Nicotiana tabacum HOM05D004222 ORTHO05D004982 3.4e-98 361.7 184 100.0
Nitab4.5_0003780g0070 Nicotiana tabacum HOM05D004222 ORTHO05D004982 7.0e-96 354.0 184 98.4
PGSC0003DMG400011493 Solanum tuberosum HOM05D004222 ORTHO05D004982 1.3e-89 333.2 184 91.8
Solyc04g010090.3 Solanum lycopersicum HOM05D004222 ORTHO05D004982 1.7e-89 332.8 184 90.8
Sopen04g005230 Solanum pennellii HOM05D004222 ORTHO05D004982 1.7e-89 332.8 184 90.8
CAN.G786.39 Capsicum annuum HOM05D004222 ORTHO05D004982 1.5e-85 319.7 185 88.6
Oeu026248.1 Olea europaea HOM05D004222 ORTHO05D004982 1.5e-77 293.1 184 79.3
Rhsim08G0239600 Rhododendron simsii HOM05D004222 ORTHO05D004982 6.2e-76 287.7 180 80.6
Dinv37865 Davidia involucrata HOM05D004222 ORTHO05D004982 8.1e-76 287.3 181 80.7
Rhsim01G0228800 Rhododendron simsii HOM05D004222 ORTHO05D004982 2.3e-75 285.8 180 81.1
Dinv15742 Davidia involucrata HOM05D004222 ORTHO05D004982 4.0e-75 285.0 186 81.2
vmacro15039 Vaccinium macrocarpon HOM05D004222 ORTHO05D004982 8.9e-75 283.9 180 80.6
vmacro16353 Vaccinium macrocarpon HOM05D004222 ORTHO05D004982 8.9e-75 283.9 180 80.6
CSS0031925 Camellia sinensis var. sinensis HOM05D004222 ORTHO05D004982 9.9e-74 280.4 183 79.8
Oeu043649.1 Olea europaea HOM05D004222 ORTHO05D004982 9.9e-74 280.4 192 75.0
Hma1.2p1_0074F.1_g038830 Hydrangea macrophylla HOM05D004222 ORTHO05D004982 2.2e-73 279.3 184 77.7
Hma1.2p1_3000F.1_g331525 Hydrangea macrophylla HOM05D004222 ORTHO05D004982 2.2e-73 279.3 184 77.7
Actinidia21792 Actinidia chinensis HOM05D004222 ORTHO05D004982 2.9e-73 278.9 180 80.6
Potri.001G168300 Populus trichocarpa HOM05D004222 ORTHO05D004982 4.9e-73 278.1 185 81.1
TAR383G0284 Trochodendron aralioides HOM05D004222 ORTHO05D004982 4.9e-73 278.1 183 78.7
Manes.11G019600 Manihot esculenta HOM05D004222 ORTHO05D004982 8.3e-73 277.3 186 81.2
SGA_v2.0_scaffold4G02066 Striga asiatica HOM05D004222 ORTHO05D004982 8.3e-73 277.3 186 76.9
GSVIVG01016750001 Vitis vinifera HOM05D004222 ORTHO05D004982 8.3e-73 277.3 185 78.9
Haze_16054 Corylus avellana HOM05D004222 ORTHO05D004982 1.9e-72 276.2 185 78.4
FAN09G4904 Fragaria x ananassa HOM05D004222 ORTHO05D004982 4.1e-72 275.0 175 80.0
CiPaw.01G218100 Carya illinoinensis HOM05D004222 ORTHO05D004982 5.4e-72 274.6 185 79.5
DCAR_002631 Daucus carota HOM05D004222 ORTHO05D004982 5.4e-72 274.6 179 77.7
FvH4_6g34870 Fragaria vesca HOM05D004222 ORTHO05D004982 5.4e-72 274.6 175 80.0
FAN14G1002 Fragaria x ananassa HOM05D004222 ORTHO05D004982 5.4e-72 274.6 175 80.0
Lj9A532G68 Lonicera japonica HOM05D004222 ORTHO05D004982 5.4e-72 274.6 180 77.8
Lj9C524T6 Lonicera japonica HOM05D004222 ORTHO05D004982 5.4e-72 274.6 180 77.8
Sabra01G0142300 Salix brachista HOM05D004222 ORTHO05D004982 9.2e-72 273.9 185 80.0
Cc04_g01280 Coffea canephora HOM05D004222 ORTHO05D004982 1.2e-71 273.5 183 76.0
Lsat_1_v5_gn_4_74980 Lactuca sativa HOM05D004222 ORTHO05D004982 1.2e-71 273.5 181 77.3
DCAR_023344 Daucus carota HOM05D004222 ORTHO05D004982 2.1e-71 272.7 178 76.4
FAN02G1508 Fragaria x ananassa HOM05D004222 ORTHO05D004982 3.5e-71 271.9 175 79.4
Peaxi162Scf00528g00226 Petunia axillaris HOM05D004222 ORTHO05D004982 4.6e-71 271.6 172 82.0
Cc02_g29210 Coffea canephora HOM05D004222 ORTHO05D004982 7.8e-71 270.8 186 74.7
Actinidia32191 Actinidia chinensis HOM05D004222 ORTHO05D004982 2.3e-70 269.2 181 78.5
Manes.04G145400 Manihot esculenta HOM05D004222 ORTHO05D004982 8.6e-70 267.3 186 76.9
Duzib235G1272 Durio zibethinus HOM05D004222 ORTHO05D004982 1.1e-69 266.9 185 77.3
RcHm_v2.0_Chr2g0145741 Rosa chinensis HOM05D004222 ORTHO05D004982 1.1e-69 266.9 178 75.8
Gorai.011G059100 Gossypium raimondii HOM05D004222 ORTHO05D004982 7.3e-69 264.2 185 76.8
TAR626G0656 Trochodendron aralioides HOM05D004222 ORTHO05D004982 7.3e-69 264.2 178 74.7
ECA232G1089 Erigeron canadensis HOM05D004222 ORTHO05D004982 1.2e-68 263.5 181 75.7
CiPaw.02G135300 Carya illinoinensis HOM05D004222 ORTHO05D004982 1.6e-68 263.1 185 76.8
Thecc.06G121100 Theobroma cacao HOM05D004222 ORTHO05D004982 2.1e-68 262.7 180 75.6
MD09G1181700 Malus domestica HOM05D004222 ORTHO05D004982 2.8e-68 262.3 182 78.6
A08p01190 Brassica napus HOM05D004222 ORTHO05D004982 3.6e-68 261.9 185 73.5
BraA08t32170Z Brassica rapa HOM05D004222 ORTHO05D004982 3.6e-68 261.9 185 73.5
Cfa003517 Carpinus fangiana HOM05D004222 ORTHO05D004982 3.6e-68 261.9 173 78.6
Gohir.A10G053600 Gossypium hirsutum HOM05D004222 ORTHO05D004982 3.6e-68 261.9 185 76.2
BolC3t21520H Brassica oleracea HOM05D004222 ORTHO05D004982 6.2e-68 261.2 185 73.0
Gohir.D10G055400 Gossypium hirsutum HOM05D004222 ORTHO05D004982 6.2e-68 261.2 185 76.2
BcaC01g01437 Brassica carinata HOM05D004222 ORTHO05D004982 8.1e-68 260.8 185 73.0
C03p92020 Brassica napus HOM05D004222 ORTHO05D004982 8.1e-68 260.8 185 73.0
Atru.chr1.3997 Acer truncatum HOM05D004222 ORTHO05D004982 1.1e-67 260.4 182 75.3
MELO3C024352.2 Cucumis melo HOM05D004222 ORTHO05D004982 1.1e-67 260.4 181 76.8
ECA232G2519 Erigeron canadensis HOM05D004222 ORTHO05D004982 1.8e-67 259.6 181 75.1
AUR62006751 Chenopodium quinoa HOM05D004222 ORTHO05D004982 2.4e-67 259.2 185 75.1
QL05p004213 Quercus lobata HOM05D004222 ORTHO05D004982 2.4e-67 259.2 185 76.2
Sp1g40590 Schrenkiella parvula HOM05D004222 ORTHO05D004982 2.4e-67 259.2 185 73.0
ClCG09G000990 Citrullus lanatus HOM05D004222 ORTHO05D004982 3.1e-67 258.8 181 76.2
BcaB04g17022 Brassica carinata HOM05D004222 ORTHO05D004982 6.8e-67 257.7 181 72.9
AUR62000395 Chenopodium quinoa HOM05D004222 ORTHO05D004982 6.8e-67 257.7 184 73.9
CsaV3_7G034430 Cucumis sativus L. HOM05D004222 ORTHO05D004982 1.2e-66 256.9 178 76.4
SGA_v2.0_scaffold68G22854 Striga asiatica HOM05D004222 ORTHO05D004982 1.2e-66 256.9 186 74.2
COL.COLO4_30749 Corchorus olitorius HOM05D004222 ORTHO05D004982 1.5e-66 256.5 182 72.0
Thhalv10012402m.g Eutrema salsugineum HOM05D004222 ORTHO05D004982 1.5e-66 256.5 185 73.0
Prupe.3G039800 Prunus persica HOM05D004222 ORTHO05D004982 1.5e-66 256.5 177 74.6
MSTRG.9521 Avicennia marina HOM05D004222 ORTHO05D004982 2.0e-66 256.1 187 72.7
Sc16g0009040 Simmondsia chinensis HOM05D004222 ORTHO05D004982 2.0e-66 256.1 179 74.9
SalBow6G3336 Salvia bowleyana HOM05D004222 ORTHO05D004982 2.6e-66 255.8 184 71.2
EL10Ac4g09456 Beta vulgaris HOM05D004222 ORTHO05D004982 4.4e-66 255.0 184 73.4
Migut.I01080 Erythranthe guttata HOM05D004222 ORTHO05D004982 4.4e-66 255.0 185 71.9
unitig_699.g19654 Utricularia gibba HOM05D004222 ORTHO05D004982 4.4e-66 255.0 182 73.1
SalBow6G2027 Salvia bowleyana HOM05D004222 ORTHO05D004982 7.6e-66 254.2 184 70.7
Eucgr.G03389 Eucalyptus grandis HOM05D004222 ORTHO05D004982 1.7e-65 253.1 179 70.9
PSO135G0791 Papaver somniferum HOM05D004222 ORTHO05D004982 1.7e-65 253.1 181 71.8
TWI75G1350 Tripterygium wilfordii HOM05D004222 ORTHO05D004982 1.7e-65 253.1 184 72.3
Sed0002362 Sechium edule HOM05D004222 ORTHO05D004982 2.9e-65 252.3 180 74.4
TWI31G0208 Tripterygium wilfordii HOM05D004222 ORTHO05D004982 2.9e-65 252.3 184 73.4
Ciclev10032895m.g Citrus clementina HOM05D004222 ORTHO05D004982 1.1e-64 250.4 177 72.9
SalBow6G6030 Salvia bowleyana HOM05D004222 ORTHO05D004982 2.4e-64 249.2 181 72.4
Eucgr.H02488 Eucalyptus grandis HOM05D004222 ORTHO05D004982 3.2e-64 248.8 179 70.4
Lalb_Chr13g0298711 Lupinus albus HOM05D004222 ORTHO05D004982 3.2e-64 248.8 178 72.5
PGR031G1684 Punica granatum HOM05D004222 ORTHO05D004982 3.2e-64 248.8 180 74.4
Ciclev10026608m.g Citrus clementina HOM05D004222 ORTHO05D004982 5.4e-64 248.1 181 70.7
AT1G54140 Arabidopsis thaliana HOM05D004222 ORTHO05D004982 7.1e-64 247.7 185 70.3
PSO724G0032 Papaver somniferum HOM05D004222 ORTHO05D004982 9.3e-64 247.3 181 69.1
Glyma.17G037200 Glycine max HOM05D004222 ORTHO05D004982 3.5e-63 245.4 172 72.7
Nn2g10347 Nelumbo nucifera HOM05D004222 ORTHO05D004982 7.8e-63 244.2 172 74.4
AL1G62860 Arabidopsis lyrata HOM05D004222 ORTHO05D004982 1.0e-62 243.8 184 69.0
Glyma.07G236200 Glycine max HOM05D004222 ORTHO05D004982 1.0e-62 243.8 178 70.8
ATR0598G103 Amborella trichopoda HOM05D004222 ORTHO05D004982 1.3e-62 243.4 182 69.2
Lj4g0027352 Lotus japonicus HOM05D004222 ORTHO05D004982 3.0e-62 242.3 178 71.3
Phvul.003G118200 Phaseolus vulgaris HOM05D004222 ORTHO05D004982 3.9e-62 241.9 172 70.3
AL1G63010 Arabidopsis lyrata HOM05D004222 ORTHO05D004982 8.7e-62 240.7 185 68.6
CARHR044490 Cardamine hirsuta HOM05D004222 ORTHO05D004982 1.5e-61 240.0 184 69.6
THA.LOC104810368 Tarenaya hassleriana HOM05D004222 ORTHO05D004982 3.3e-61 238.8 181 68.5
arahy.Tifrunner.gnm1.ann1.M5IJ04 Arachis hypogaea HOM05D004222 ORTHO05D004982 5.6e-61 238.0 187 68.4
Ca_21404_v3 Cicer arietinum L. HOM05D004222 ORTHO05D004982 5.6e-61 238.0 169 71.6
Ca_21419_v3 Cicer arietinum L. HOM05D004222 ORTHO05D004982 5.6e-61 238.0 169 71.6
arahy.Tifrunner.gnm1.ann1.J7IGQN Arachis hypogaea HOM05D004222 ORTHO05D004982 9.6e-61 237.3 187 68.4
BcaC08g44165 Brassica carinata HOM05D004222 ORTHO05D004982 1.6e-60 236.5 185 70.3
Medtr4g123000 Medicago truncatula HOM05D004222 ORTHO05D004982 1.6e-60 236.5 180 69.4
Medtr3g015130 Medicago truncatula HOM05D004222 ORTHO05D004982 2.1e-60 236.1 180 69.4
BolC6t36754H Brassica oleracea HOM05D004222 ORTHO05D004982 2.8e-60 235.7 185 70.3
Carub.0001s4338 Capsella rubella HOM05D004222 ORTHO05D004982 2.8e-60 235.7 182 69.2
Ah.04g158670 Amaranthus hybridus HOM05D004222 ORTHO05D004982 6.2e-60 234.6 180 71.1
BcaB02g10859 Brassica carinata HOM05D004222 ORTHO05D004982 8.1e-60 234.2 180 68.3
CANSAT64G2454 Cannabis sativa HOM05D004222 ORTHO05D004982 6.9e-59 231.1 179 70.9
VMungo0647G2371 Vigna mungo HOM05D004222 ORTHO05D004982 1.2e-58 230.3 179 67.6
Psat0s1953g0320 Pisum sativum HOM05D004222 ORTHO05D004982 1.5e-58 229.9 183 67.8
Aqoxy5G01362 Aquilegia oxysepala HOM05D004222 ORTHO05D004982 2.6e-58 229.2 176 68.8
CDE08G1040 Ceratophyllum demersum HOM05D004222 ORTHO05D004982 2.6e-58 229.2 183 65.6
C06p15670 Brassica napus HOM05D004222 ORTHO05D004982 3.4e-58 228.8 153 77.8
Glyma.02G277500 Glycine max HOM05D004222 ORTHO05D004982 4.4e-58 228.4 179 67.0
Phvul.008G203400 Phaseolus vulgaris HOM05D004222 ORTHO05D004982 9.9e-58 227.3 179 68.7
HanXRQChr09g0262591 Helianthus annuus HOM05D004222 ORTHO05D004982 2.9e-57 225.7 163 72.4
PGR042G1688 Punica granatum HOM05D004222 ORTHO05D004982 1.4e-56 223.4 155 74.8
HPP92_016607 Vanilla planifolia HOM05D004222 ORTHO05D004982 1.2e-55 220.3 199 61.8
Ah.06g195960 Amaranthus hybridus HOM05D004222 ORTHO05D004982 3.5e-55 218.8 179 65.9
Dinv10670 Davidia involucrata HOM05D004222 ORTHO05D004982 7.9e-55 217.6 132 85.6
TPR.G18581 Trifolium pratense HOM05D004222 ORTHO05D004982 7.9e-55 217.6 185 63.8
SEGI_03819 Sequoiadendron giganteum HOM05D004222 ORTHO05D004982 1.0e-54 217.2 180 63.9
Aa31LG10G1270 Aethionema arabicum HOM05D004222 ORTHO05D004982 3.0e-54 215.7 140 77.1
SHI11210 Sapria himalayana HOM05D004222 ORTHO05D004982 8.7e-54 214.2 175 64.6
MBI05_g15473_MAGBIO Magnolia biondii HOM05D004222 ORTHO05D004982 1.1e-53 213.8 185 65.4
VMungo1215G2100 Vigna mungo HOM05D004222 ORTHO05D004982 1.6e-52 209.9 247 48.6
Atru.chr1.2991 Acer truncatum HOM05D004222 ORTHO05D004982 3.8e-49 198.7 118 80.5
Os03g0408500 Oryza sativa ssp. japonica HOM05D004222 ORTHO05D004982 6.4e-49 198.0 176 62.5
Zm00001eb019630 Zea mays HOM05D004222 ORTHO05D004982 1.3e-46 190.3 192 58.3
Pp3c19_19770 Physcomitrium patens HOM05D004222 ORTHO05D004982 2.3e-46 189.5 151 64.2
Mapoly0152s0015 Marchantia polymorpha HOM05D004222 ORTHO05D004982 6.7e-46 188.0 181 56.9
SMO340G0157 Selaginella moellendorffii HOM05D004222 ORTHO05D004982 8.7e-46 187.6 143 61.5
Zm00001eb392970 Zea mays HOM05D004222 ORTHO05D004982 3.3e-45 185.7 147 66.7
AagrBONN_evm.TU.Sc2ySwM_117.372 Anthoceros agrestis HOM05D004222 ORTHO05D004982 8.1e-44 181.0 190 52.1
CBR_g52315 Chara braunii HOM05D004222 ORTHO05D004982 3.4e-42 175.6 148 60.1
AUR62029931 Chenopodium quinoa HOM05D004222 ORTHO05D004982 3.7e-36 155.6 90 84.4
Cc02_g29240 Coffea canephora HOM05D004222 ORTHO05D004982 9.0e-35 151.0 122 66.4
HanXRQChr14g0440851 Helianthus annuus HOM05D004222 ORTHO05D004982 1.2e-34 150.6 180 47.8
AUR62033567 Chenopodium quinoa HOM05D004222 ORTHO05D004982 7.6e-34 147.9 87 83.9
AUR62043147 Chenopodium quinoa HOM05D004222 ORTHO05D004982 5.0e-33 145.2 83 81.9
Ah.06g188160 Amaranthus hybridus HOM05D000059 ORTHO05D004982 6.1e-31 138.3 135 58.5
Duzib160G0511 Durio zibethinus HOM05D004222 ORTHO05D004982 1.3e-30 137.1 113 64.6
Eucgr.J01267 Eucalyptus grandis HOM05D004222 ORTHO05D004982 1.3e-30 137.1 178 46.6
C06p09920 Brassica napus HOM05D004222 ORTHO05D004982 1.8e-30 136.7 138 56.5
TPR.G12685 Trifolium pratense HOM05D004222 ORTHO05D004982 1.8e-30 136.7 85 77.6
Thhalv10029376m.g Eutrema salsugineum HOM05D004222 ORTHO05D004982 1.1e-27 127.5 126 58.7
PRCOL_00004328 Prasinoderma coloniale HOM05D004222 ORTHO05D004982 3.2e-24 115.9 127 48.8
BcaC08g43594 Brassica carinata HOM05D004222 ORTHO05D004982 6.1e-23 111.7 100 61.0
BolC6t36064H Brassica oleracea HOM05D004222 ORTHO05D004982 6.1e-23 111.7 100 61.0
Cre07.g353350 Chlamydomonas reinhardtii HOM05D004222 ORTHO05D004982 2.3e-22 109.8 118 45.8
FAN05G5041 Fragaria x ananassa HOM05D004222 ORTHO05D004982 3.3e-21 105.9 90 63.3
TPR.G10895 Trifolium pratense HOM05D004222 ORTHO05D004982 8.2e-20 101.3 90 61.1
Haze_26828 Corylus avellana HOM05D000371 ORTHO05D004982 1.1e-19 100.9 105 44.8
Os07g0612500 Oryza sativa ssp. japonica HOM05D004222 ORTHO05D004982 2.9e-17 92.8 158 34.2
AUR62034601 Chenopodium quinoa HOM05D004222 ORTHO05D004982 1.8e-14 83.6 47 87.2
unitig_52.g17107 Utricularia gibba HOM05D004222 ORTHO05D004982 2.3e-14 83.2 84 54.8
Nitab4.5_0018373g0020 Nicotiana tabacum HOM05D000428 ORTHO05D000582 5.7e-13 78.6 87 52.9
Medtr6g027990 Medicago truncatula HOM05D004222 ORTHO05D004982 2.8e-12 76.3 68 58.8
MCO04G196 Micromonas commoda HOM05D004222 ORTHO05D004982 7.0e-11 71.6 105 32.4
CARHR038570 Cardamine hirsuta HOM05D004222 ORTHO05D004982 9.1e-11 71.2 71 59.2
ECA238G1237 Erigeron canadensis HOM05D004222 ORTHO05D004982 8.5e-09 64.7 139 35.3
Cc01_g11080 Coffea canephora HOM05D004222 ORTHO05D154025 2.3e-06 56.6 102 38.2
Nitab4.5_0000520g0020 Nicotiana tabacum HOM05D000924 ORTHO05D001209 2.3e-06 56.6 71 49.3


User provided reference genes

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