Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0006724g0010 Nicotiana tabacum HOM05D004315 ORTHO05D005089 4.1e-195 684.5 333 100.0
Nitab4.5_0001843g0170 Nicotiana tabacum HOM05D004315 ORTHO05D005089 4.9e-188 661.0 334 97.3
Sopen07g023340 Solanum pennellii HOM05D004315 ORTHO05D005089 2.8e-183 645.2 333 94.3
Solyc07g044750.3 Solanum lycopersicum HOM05D004315 ORTHO05D005089 6.1e-183 644.0 333 93.7
PGSC0003DMG400021156 Solanum tuberosum HOM05D004315 ORTHO05D005089 8.9e-182 640.2 341 92.7
CAN.G1316.2 Capsicum annuum HOM05D004315 ORTHO05D005089 2.9e-180 635.2 333 92.8
Peaxi162Scf00351g00818 Petunia axillaris HOM05D004315 ORTHO05D005089 2.5e-176 622.1 333 92.2
Dinv05044 Davidia involucrata HOM05D004315 ORTHO05D005089 1.9e-152 542.7 333 80.5
TAR629G1010 Trochodendron aralioides HOM05D004315 ORTHO05D005089 6.2e-151 537.7 333 79.6
TWI14G0586 Tripterygium wilfordii HOM05D004315 ORTHO05D005089 1.5e-149 533.1 333 78.1
DCAR_013332 Daucus carota HOM05D004315 ORTHO05D005089 2.0e-149 532.7 332 78.0
Eucgr.A00888 Eucalyptus grandis HOM05D004315 ORTHO05D005089 9.9e-149 530.4 333 78.4
CSS0039894 Camellia sinensis var. sinensis HOM05D004315 ORTHO05D005089 4.9e-148 528.1 332 77.4
GSVIVG01020802001 Vitis vinifera HOM05D004315 ORTHO05D005089 4.9e-148 528.1 334 79.0
Aqoxy1G01576 Aquilegia oxysepala HOM05D004315 ORTHO05D005089 2.4e-147 525.8 333 79.0
TWI59G1372 Tripterygium wilfordii HOM05D004315 ORTHO05D005089 2.4e-147 525.8 333 76.6
Hma1.2p1_0583F.1_g183050 Hydrangea macrophylla HOM05D004315 ORTHO05D005089 7.1e-147 524.2 332 78.3
Thecc.01G165100 Theobroma cacao HOM05D004315 ORTHO05D005089 7.1e-147 524.2 333 77.5
MBI18_g11296_MAGBIO Magnolia biondii HOM05D004315 ORTHO05D005089 1.2e-146 523.5 333 78.1
Gorai.012G039600 Gossypium raimondii HOM05D004315 ORTHO05D005089 1.6e-146 523.1 333 77.2
PGR031G0720 Punica granatum HOM05D004315 ORTHO05D005089 1.6e-146 523.1 333 78.1
Gohir.A05G380500 Gossypium hirsutum HOM05D004315 ORTHO05D005089 4.6e-146 521.5 333 77.2
Gohir.D04G035100 Gossypium hirsutum HOM05D004315 ORTHO05D005089 6.0e-146 521.2 333 76.9
Oeu044867.2 Olea europaea HOM05D004315 ORTHO05D005089 6.0e-146 521.2 361 73.7
FvH4_6g39150 Fragaria vesca HOM05D004315 ORTHO05D005089 3.0e-145 518.8 333 76.9
FAN14G1093 Fragaria x ananassa HOM05D004315 ORTHO05D005089 3.0e-145 518.8 333 76.9
RcHm_v2.0_Chr2g0152961 Rosa chinensis HOM05D004315 ORTHO05D005089 6.6e-145 517.7 333 76.3
FAN05G3231 Fragaria x ananassa HOM05D004315 ORTHO05D005089 1.1e-144 516.9 333 76.6
PSO675G7088 Papaver somniferum HOM05D004315 ORTHO05D005089 1.1e-144 516.9 333 77.2
Potri.014G143500 Populus trichocarpa HOM05D004315 ORTHO05D005089 1.5e-144 516.5 332 76.8
Duzib264G0097 Durio zibethinus HOM05D004315 ORTHO05D005089 1.9e-144 516.2 333 76.6
MD09G1144800 Malus domestica HOM05D004315 ORTHO05D005089 2.5e-144 515.8 333 75.7
PSO541G6471 Papaver somniferum HOM05D004315 ORTHO05D005089 2.5e-144 515.8 333 76.6
Nn3g20219 Nelumbo nucifera HOM05D004315 ORTHO05D005089 4.3e-144 515.0 333 76.3
CANSAT64G0449 Cannabis sativa HOM05D004315 ORTHO05D005089 9.6e-144 513.8 333 76.0
MD17G1131300 Malus domestica HOM05D004315 ORTHO05D005089 9.6e-144 513.8 333 76.0
Cc05_g00540 Coffea canephora HOM05D004315 ORTHO05D005089 2.8e-143 512.3 339 76.4
CiPaw.03G190700 Carya illinoinensis HOM05D004315 ORTHO05D005089 6.2e-143 511.1 333 76.6
Ciclev10031991m.g Citrus clementina HOM05D004315 ORTHO05D005089 6.2e-143 511.1 333 75.7
Prupe.3G183100 Prunus persica HOM05D004315 ORTHO05D005089 6.2e-143 511.1 333 74.5
Glyma.02G281300 Glycine max HOM05D004315 ORTHO05D005089 1.3e-140 503.4 334 76.0
arahy.Tifrunner.gnm1.ann1.8V1VF7 Arachis hypogaea HOM05D004315 ORTHO05D005089 3.8e-140 501.9 334 76.0
LjContig00049g0028236 Lotus japonicus HOM05D004315 ORTHO05D005089 3.8e-140 501.9 333 75.4
Migut.H01268 Erythranthe guttata HOM05D004315 ORTHO05D005089 4.2e-139 498.4 333 74.2
ATR0165G021 Amborella trichopoda HOM05D004315 ORTHO05D005089 7.1e-139 497.7 305 80.3
HanXRQChr01g0023901 Helianthus annuus HOM05D004315 ORTHO05D005089 1.6e-138 496.5 335 74.3
arahy.Tifrunner.gnm1.ann1.VQL6P1 Arachis hypogaea HOM05D004315 ORTHO05D005089 2.1e-138 496.1 341 74.5
Lalb_Chr10g0106401 Lupinus albus HOM05D004315 ORTHO05D005089 3.5e-138 495.4 333 73.9
vmacro03380 Vaccinium macrocarpon HOM05D004315 ORTHO05D005089 4.6e-138 495.0 333 72.4
Lsat_1_v5_gn_2_30700 Lactuca sativa HOM05D004315 ORTHO05D005089 1.0e-137 493.8 335 73.1
HanXRQChr04g0115031 Helianthus annuus HOM05D004315 ORTHO05D005089 1.3e-137 493.4 333 72.7
ECA248G0068 Erigeron canadensis HOM05D004315 ORTHO05D005089 3.9e-137 491.9 335 74.3
HanXRQChr14g0432981 Helianthus annuus HOM05D004315 ORTHO05D005089 6.7e-137 491.1 333 72.7
Sabra14G0108500 Salix brachista HOM05D004315 ORTHO05D005089 6.7e-137 491.1 347 71.8
Dinv10789 Davidia involucrata HOM05D004315 ORTHO05D005089 1.1e-136 490.3 330 74.8
Psat2g018080 Pisum sativum HOM05D004315 ORTHO05D005089 7.4e-136 487.6 336 73.2
Cpa.g.sc1123.2 Carica papaya HOM05D004315 ORTHO05D005089 9.6e-136 487.3 336 73.2
Medtr5g090130 Medicago truncatula HOM05D004315 ORTHO05D005089 1.6e-135 486.5 335 74.0
Potri.011G164500 Populus trichocarpa HOM05D004315 ORTHO05D005089 2.8e-135 485.7 328 73.5
SEGI_10868 Sequoiadendron giganteum HOM05D004315 ORTHO05D005089 4.8e-135 485.0 333 73.6
VMungo0647G0619 Vigna mungo HOM05D004315 ORTHO05D005089 1.4e-134 483.4 334 73.1
MBI02_g32064_MAGBIO Magnolia biondii HOM05D004315 ORTHO05D005089 3.1e-134 482.3 308 77.9
TPR.G24734 Trifolium pratense HOM05D004315 ORTHO05D005089 5.3e-134 481.5 340 71.8
MELO3C026388.2 Cucumis melo HOM05D004315 ORTHO05D005089 9.0e-134 480.7 334 72.5
Lj1A584G30 Lonicera japonica HOM05D004315 ORTHO05D005089 5.8e-133 478.0 339 72.3
Phvul.008G199600 Phaseolus vulgaris HOM05D004315 ORTHO05D005089 1.7e-132 476.5 334 71.9
CSS0023242 Camellia sinensis var. sinensis HOM05D004315 ORTHO05D005089 4.9e-132 474.9 335 71.6
Cfa000809 Carpinus fangiana HOM05D004315 ORTHO05D005089 6.4e-132 474.6 331 71.9
CiPaw.10G109400 Carya illinoinensis HOM05D004315 ORTHO05D005089 6.4e-132 474.6 333 70.9
COL.COLO4_29897 Corchorus olitorius HOM05D004315 ORTHO05D005089 1.4e-131 473.4 288 80.9
Sed0001791 Sechium edule HOM05D004315 ORTHO05D005089 3.2e-131 472.2 339 70.2
Potri.001G466900 Populus trichocarpa HOM05D004315 ORTHO05D005089 5.5e-131 471.5 313 74.8
MELO3C016194.2 Cucumis melo HOM05D004315 ORTHO05D005089 2.7e-130 469.2 333 70.6
Actinidia12522 Actinidia chinensis HOM05D004315 ORTHO05D005089 3.5e-130 468.8 333 71.8
GSVIVG01021661001 Vitis vinifera HOM05D004315 ORTHO05D005089 4.6e-130 468.4 331 71.9
ClCG07G010830 Citrullus lanatus HOM05D004315 ORTHO05D005089 6.0e-130 468.0 333 70.3
Lj2A329G54 Lonicera japonica HOM05D004315 ORTHO05D005089 1.8e-129 466.5 313 74.1
Atru.chr10.841 Acer truncatum HOM05D004315 ORTHO05D005089 3.9e-129 465.3 331 71.3
Rhsim13G0121900 Rhododendron simsii HOM05D004315 ORTHO05D005089 5.1e-129 464.9 359 66.6
Cc09_g07890 Coffea canephora HOM05D004315 ORTHO05D005089 8.7e-129 464.2 309 73.8
SalBow8G0183 Salvia bowleyana HOM05D004315 ORTHO05D005089 1.1e-128 463.8 309 72.8
MSTRG.16294 Avicennia marina HOM05D004315 ORTHO05D005089 1.9e-128 463.0 307 73.9
Oeu015176.1 Olea europaea HOM05D004315 ORTHO05D005089 4.3e-128 461.8 306 75.2
Oeu041105.1 Olea europaea HOM05D004315 ORTHO05D005089 5.6e-128 461.5 311 74.0
ClCG11G016660 Citrullus lanatus HOM05D004315 ORTHO05D005089 1.6e-127 459.9 389 63.0
Nitab4.5_0011274g0010 Nicotiana tabacum HOM05D004315 ORTHO05D005089 2.1e-127 459.5 308 74.0
Lsat_1_v5_gn_1_91760 Lactuca sativa HOM05D004315 ORTHO05D005089 4.8e-127 458.4 341 66.9
CDE05G3605 Ceratophyllum demersum HOM05D003391 ORTHO05D005563 8.2e-127 457.6 333 68.5
CsaV3_4G007480 Cucumis sativus L. HOM05D004315 ORTHO05D005089 1.1e-126 457.2 333 68.5
Sabra16G0316700 Salix brachista HOM05D004315 ORTHO05D005089 1.1e-126 457.2 353 66.3
Os09g0133700 Oryza sativa ssp. japonica HOM05D004315 ORTHO05D005089 1.8e-126 456.4 304 74.3
Os07g0147700 Oryza sativa ssp. japonica HOM05D004315 ORTHO05D005089 5.3e-126 454.9 336 70.8
Migut.M01899 Erythranthe guttata HOM05D004315 ORTHO05D005089 1.5e-125 453.4 311 71.1
Nitab4.5_0000076g0250 Nicotiana tabacum HOM05D004315 ORTHO05D005089 3.4e-125 452.2 308 73.1
PGSC0003DMG401028079 Solanum tuberosum HOM05D004315 ORTHO05D005089 5.8e-125 451.4 310 72.6
Zm00001eb299940 Zea mays HOM05D004315 ORTHO05D005089 2.9e-124 449.1 334 69.2
DCAR_007839 Daucus carota HOM05D004315 ORTHO05D005089 3.8e-124 448.7 304 73.7
Sabra11G0140700 Salix brachista HOM05D004315 ORTHO05D005089 6.5e-124 448.0 350 66.6
Solyc02g023980.3 Solanum lycopersicum HOM05D004315 ORTHO05D005089 1.9e-123 446.4 310 71.6
Ah.09g232250 Amaranthus hybridus HOM05D004315 ORTHO05D005089 4.6e-122 441.8 305 70.2
SHI10516 Sapria himalayana HOM05D004315 ORTHO05D005089 4.6e-122 441.8 329 66.3
Aa31LG10G6590 Aethionema arabicum HOM05D004315 ORTHO05D005089 6.0e-122 441.4 324 64.8
Thhalv10008046m.g Eutrema salsugineum HOM05D004315 ORTHO05D005089 6.0e-122 441.4 321 67.6
Sp1g26410 Schrenkiella parvula HOM05D004315 ORTHO05D005089 1.0e-121 440.7 304 69.7
CANSAT35G0713 Cannabis sativa HOM05D004315 ORTHO05D005089 1.3e-121 440.3 324 67.3
Carub.0001s2880 Capsella rubella HOM05D004315 ORTHO05D005089 1.3e-121 440.3 313 68.7
AL1G44580 Arabidopsis lyrata HOM05D004315 ORTHO05D005089 1.8e-121 439.9 325 66.8
AT1G30540 Arabidopsis thaliana HOM05D004315 ORTHO05D005089 1.8e-121 439.9 325 66.5
BcaC05g27075 Brassica carinata HOM05D004315 ORTHO05D005089 1.8e-121 439.9 330 64.8
BcaB07g32690 Brassica carinata HOM05D004315 ORTHO05D005089 2.3e-121 439.5 331 65.3
Atru.chr6.2011 Acer truncatum HOM05D004315 ORTHO05D005089 3.9e-121 438.7 279 78.1
Duzib147G0966 Durio zibethinus HOM05D004315 ORTHO05D005089 6.7e-121 438.0 333 66.7
Zm00001eb261810 Zea mays HOM05D004315 ORTHO05D005089 6.7e-121 438.0 333 67.9
A09p35900 Brassica napus HOM05D004315 ORTHO05D005089 8.7e-121 437.6 314 68.2
BraA09t39115Z Brassica rapa HOM05D004315 ORTHO05D005089 1.9e-120 436.4 314 68.2
CAN.G304.4 Capsicum annuum HOM05D004315 ORTHO05D005089 1.9e-120 436.4 310 70.6
C05p29560 Brassica napus HOM05D004315 ORTHO05D005089 3.3e-120 435.6 331 64.7
CARHR029950 Cardamine hirsuta HOM05D004315 ORTHO05D005089 3.3e-120 435.6 313 67.4
BolC5t31687H Brassica oleracea HOM05D004315 ORTHO05D005089 4.3e-120 435.3 331 64.7
THA.LOC104798598 Tarenaya hassleriana HOM05D004315 ORTHO05D005089 1.1e-118 430.6 367 61.6
HPP92_005880 Vanilla planifolia HOM05D004315 ORTHO05D005089 1.4e-118 430.3 341 65.7
SGA_v2.0_scaffold223G42867 Striga asiatica HOM05D004315 ORTHO05D005089 5.3e-118 428.3 336 64.6
Peaxi162Scf00395g00318 Petunia axillaris HOM05D004315 ORTHO05D005089 1.3e-116 423.7 308 69.8
Manes.02G090600 Manihot esculenta HOM05D004315 ORTHO05D005089 1.7e-116 423.3 246 83.3
unitig_37.g12072 Utricularia gibba HOM05D004315 ORTHO05D005089 4.2e-115 418.7 316 66.8
Sed0020733 Sechium edule HOM05D004315 ORTHO05D005089 9.7e-112 407.5 290 73.4
BcaB07g32692 Brassica carinata HOM05D004315 ORTHO05D005089 1.3e-111 407.1 317 64.4
QL05p061983 Quercus lobata HOM05D004315 ORTHO05D005089 1.4e-107 393.7 513 44.6
CsaV3_4G032170 Cucumis sativus L. HOM05D004315 ORTHO05D005089 3.6e-106 389.0 334 61.4
Glyma.14G033300 Glycine max HOM05D004315 ORTHO05D005089 3.3e-104 382.5 247 78.1
BcaB07g32666 Brassica carinata HOM05D004315 ORTHO05D005089 3.0e-97 359.4 279 64.2
SMO334G0132 Selaginella moellendorffii HOM05D004315 ORTHO05D005089 3.3e-96 355.9 326 56.1
Mapoly0122s0046 Marchantia polymorpha HOM05D004315 ORTHO05D005089 4.8e-95 352.1 334 55.1
Manes.14G123700 Manihot esculenta HOM05D004315 ORTHO05D005089 2.2e-92 343.2 242 67.8
Lsat_1_v5_gn_1_77721 Lactuca sativa HOM05D004315 ORTHO05D005089 2.9e-92 342.8 213 79.8
Hma1.2p1_0067F.1_g036960 Hydrangea macrophylla HOM05D004315 ORTHO05D005089 1.6e-85 320.5 206 77.2
Pp3c17_6390 Physcomitrium patens HOM05D004315 ORTHO05D005089 1.0e-84 317.8 277 59.2
Actinidia01578 Actinidia chinensis HOM05D004315 ORTHO05D005089 6.5e-84 315.1 234 69.7
Haze_05859 Corylus avellana HOM05D004315 ORTHO05D005089 5.5e-83 312.0 260 62.7
Haze_05864 Corylus avellana HOM05D004315 ORTHO05D005089 1.6e-82 310.5 260 62.3
Sc10g0005420 Simmondsia chinensis HOM05D004315 ORTHO05D005089 3.8e-76 289.3 235 64.3
Sopen02g006690 Solanum pennellii HOM05D004315 ORTHO05D005089 6.6e-76 288.5 184 77.7
Cfa023542 Carpinus fangiana HOM05D004315 ORTHO05D005089 7.2e-75 285.0 190 75.3
Haze_13622 Corylus avellana HOM05D004315 ORTHO05D005089 8.3e-71 271.6 163 81.6
Hund21564 Selenicereus undatus HOM05D004315 ORTHO05D005089 7.0e-62 241.9 189 64.6
CBR_g20100 Chara braunii HOM05D004315 ORTHO05D005089 5.6e-59 232.3 359 39.6
QL05p062039 Quercus lobata HOM05D004315 ORTHO05D005089 4.0e-57 226.1 144 75.0
Zm00001eb058170 Zea mays HOM05D004315 ORTHO05D005089 5.2e-57 225.7 191 63.9
Hund21563 Selenicereus undatus HOM05D004315 ORTHO05D005089 2.2e-55 220.3 143 74.1
AagrBONN_evm.TU.Sc2ySwM_117.2193 Anthoceros agrestis HOM05D004315 ORTHO05D005089 6.0e-53 212.2 274 46.0
Manes.01G131701 Manihot esculenta HOM05D004315 ORTHO05D005089 1.9e-51 207.2 148 70.3
Actinidia33709 Actinidia chinensis HOM05D004315 ORTHO05D005089 1.8e-49 200.7 146 67.8
PRCOL_00003495 Prasinoderma coloniale HOM05D004315 ORTHO05D005089 7.8e-45 185.3 285 43.5
TPR.G1178 Trifolium pratense HOM05D003586 ORTHO05D004036 2.5e-43 180.3 145 63.4
Manes.01G131702 Manihot esculenta HOM05D004315 ORTHO05D005089 7.1e-30 135.6 93 73.1
SEGI_40766 Sequoiadendron giganteum HOM05D004315 ORTHO05D005089 8.7e-28 128.6 119 53.8
Pp3s34_420 Physcomitrium patens HOM05D000198 ORTHO05D309562 1.1e-27 128.3 258 34.9
Cre17.g720528 Chlamydomonas reinhardtii HOM05D004315 ORTHO05D005089 2.5e-27 127.1 228 37.3
MCO07G054 Micromonas commoda HOM05D004315 ORTHO05D005089 2.8e-26 123.6 337 33.8
QL04p059944 Quercus lobata HOM05D004315 ORTHO05D005089 4.0e-25 119.8 71 83.1
SEGI_21833 Sequoiadendron giganteum HOM05D004315 ORTHO05D005089 2.4e-22 110.5 127 47.2
Hma1.2p1_0067F.1_g036930 Hydrangea macrophylla HOM05D004315 ORTHO05D005089 2.8e-18 97.1 57 80.7
Cfa023541 Carpinus fangiana HOM05D004315 ORTHO05D005089 4.8e-18 96.3 61 77.0
DCAR_009744 Daucus carota HOM05D004315 ORTHO05D018839 2.2e-15 87.4 86 51.2
TAR624G0620 Trochodendron aralioides HOM05D004315 ORTHO05D005089 3.9e-12 76.6 45 73.3
CDE04G1567 Ceratophyllum demersum HOM05D001307 ORTHO05D005089 3.3e-11 73.6 82 51.2
Atru.chr6.2012 Acer truncatum HOM05D004315 ORTHO05D005089 3.7e-10 70.1 44 68.2
Ah.03g146620 Amaranthus hybridus HOM05D004315 ORTHO05D005089 1.4e-09 68.2 49 67.3


User provided reference genes

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