Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0006575g0040 Nicotiana tabacum HOM05D001969 ORTHO05D009003 3.0e-57 225.3 146 100.0
Nitab4.5_0003069g0040 Nicotiana tabacum HOM05D001969 ORTHO05D009003 1.2e-53 213.4 146 95.2
Solyc07g064840.3 Solanum lycopersicum HOM05D001969 ORTHO05D009003 1.6e-42 176.4 146 79.5
Nitab4.5_0002260g0270 Nicotiana tabacum HOM05D001969 ORTHO05D009003 2.7e-42 175.6 146 81.5
Peaxi162Scf00423g00066 Petunia axillaris HOM05D001969 ORTHO05D009003 4.6e-42 174.9 143 80.4
Sopen07g033040 Solanum pennellii HOM05D001969 ORTHO05D009003 4.6e-42 174.9 146 79.5
PGSC0003DMG400022306 Solanum tuberosum HOM05D001969 ORTHO05D009003 7.9e-42 174.1 146 78.1
Nitab4.5_0003358g0010 Nicotiana tabacum HOM05D001969 ORTHO05D009003 5.1e-41 171.4 146 79.5
CAN.G1310.15 Capsicum annuum HOM05D001969 ORTHO05D009003 6.7e-41 171.0 146 78.8
Cc11_g01780 Coffea canephora HOM05D001969 ORTHO05D009003 1.9e-40 169.5 145 77.9
CSS0025708 Camellia sinensis var. sinensis HOM05D001969 ORTHO05D009003 1.6e-39 166.4 142 75.4
Cc11_g01770 Coffea canephora HOM05D001969 ORTHO05D009003 2.2e-39 166.0 144 76.4
CAN.G1720.5 Capsicum annuum HOM05D001969 ORTHO05D009003 6.3e-39 164.5 145 77.2
HanXRQChr09g0274351 Helianthus annuus HOM05D001969 ORTHO05D009003 1.4e-38 163.3 137 78.1
MSTRG.23988 Avicennia marina HOM05D001969 ORTHO05D009003 2.4e-38 162.5 133 79.7
TAR627G0343 Trochodendron aralioides HOM05D001969 ORTHO05D009003 6.9e-38 161.0 139 77.0
TAR627G0582 Trochodendron aralioides HOM05D001969 ORTHO05D009003 6.9e-38 161.0 148 75.0
HanXRQChr11g0350221 Helianthus annuus HOM05D001969 ORTHO05D009003 9.0e-38 160.6 137 77.4
DCAR_011200 Daucus carota HOM05D001969 ORTHO05D009003 5.9e-37 157.9 139 53.2
CANSAT78G0375 Cannabis sativa HOM05D001969 ORTHO05D003463 7.7e-37 157.5 138 75.4
HanXRQChr06g0167021 Helianthus annuus HOM05D001969 ORTHO05D009003 7.7e-37 157.5 137 75.9
Oeu047331.1 Olea europaea HOM05D001969 ORTHO05D009003 7.7e-37 157.5 135 79.3
vmacro09267 Vaccinium macrocarpon HOM05D001969 ORTHO05D009003 2.9e-36 155.6 131 76.3
SalBow7G2523 Salvia bowleyana HOM05D001969 ORTHO05D009003 1.9e-35 152.9 140 72.1
ECA236G1367 Erigeron canadensis HOM05D001969 ORTHO05D009003 4.2e-35 151.8 137 70.1
TAR629G1647 Trochodendron aralioides HOM05D001969 ORTHO05D009003 4.2e-35 151.8 145 71.7
Lju41E32T0 Lonicera japonica HOM05D001969 ORTHO05D009003 9.4e-35 150.6 88 79.5
ECA233G3782 Erigeron canadensis HOM05D001969 ORTHO05D009003 1.2e-34 150.2 137 69.3
SalBow1G0343 Salvia bowleyana HOM05D001969 ORTHO05D009003 1.2e-34 150.2 138 71.7
SalBow7G4035 Salvia bowleyana HOM05D001969 ORTHO05D009003 1.2e-34 150.2 138 71.7
SGA_v2.0_scaffold135G34841 Striga asiatica HOM05D001969 ORTHO05D009003 1.2e-34 150.2 138 72.5
Lsat_1_v5_gn_3_137700 Lactuca sativa HOM05D001969 ORTHO05D009003 2.1e-34 149.4 138 62.3
Nn1g03931 Nelumbo nucifera HOM05D001969 ORTHO05D009003 2.1e-34 149.4 141 70.9
Dinv23700 Davidia involucrata HOM05D001969 ORTHO05D009003 2.7e-34 149.1 131 71.0
Migut.H00150 Erythranthe guttata HOM05D001969 ORTHO05D009003 2.7e-34 149.1 133 70.7
Aqoxy6G02660 Aquilegia oxysepala HOM05D001969 ORTHO05D009003 3.6e-34 148.7 144 70.1
CANSAT21G1059 Cannabis sativa HOM05D001969 ORTHO05D009003 3.6e-34 148.7 138 74.6
Nn1g06730 Nelumbo nucifera HOM05D001969 ORTHO05D009003 3.6e-34 148.7 137 64.2
SGA_v2.0_scaffold3G01553 Striga asiatica HOM05D001969 ORTHO05D009003 4.6e-34 148.3 130 74.6
Rhsim04G0021700 Rhododendron simsii HOM05D001969 ORTHO05D009003 7.9e-34 147.5 131 75.6
Atru.chr6.3054 Acer truncatum HOM05D001969 ORTHO05D009003 1.8e-33 146.4 142 69.0
Actinidia39300 Actinidia chinensis HOM05D001969 ORTHO05D009003 3.0e-33 145.6 137 72.3
Actinidia39674 Actinidia chinensis HOM05D001969 ORTHO05D003463 1.1e-32 143.7 135 68.9
Glyma.09G257600 Glycine max HOM05D001969 ORTHO05D009003 2.5e-32 142.5 134 73.1
COL.COLO4_13690 Corchorus olitorius HOM05D001969 ORTHO05D009003 3.3e-32 142.1 135 74.1
Thecc.02G172900 Theobroma cacao HOM05D001969 ORTHO05D009003 3.3e-32 142.1 135 73.3
Sed0009336 Sechium edule HOM05D001969 ORTHO05D009003 2.2e-31 139.4 139 70.5
Glyma.18G235000 Glycine max HOM05D001969 ORTHO05D009003 2.8e-31 139.0 134 72.4
QL08p048209 Quercus lobata HOM05D001969 ORTHO05D009003 3.7e-31 138.7 129 70.5
VMungo1127G0255 Vigna mungo HOM05D001969 ORTHO05D009003 3.7e-31 138.7 134 70.1
MBI04_g38761_MAGBIO Magnolia biondii HOM05D001969 ORTHO05D009003 6.3e-31 137.9 144 66.7
Potri.013G145800 Populus trichocarpa HOM05D001969 ORTHO05D009003 8.2e-31 137.5 140 68.6
Gohir.A03G159600 Gossypium hirsutum HOM05D001969 ORTHO05D009003 1.1e-30 137.1 135 72.6
Gohir.D02G182700 Gossypium hirsutum HOM05D001969 ORTHO05D009003 1.1e-30 137.1 135 72.6
Duzib248G0251 Durio zibethinus HOM05D001969 ORTHO05D009003 1.4e-30 136.7 135 71.9
Phvul.011G177800 Phaseolus vulgaris HOM05D001969 ORTHO05D009003 1.4e-30 136.7 134 69.4
RcHm_v2.0_Chr2g0127151 Rosa chinensis HOM05D001969 ORTHO05D009003 3.1e-30 135.6 130 56.2
TWI18G1087 Tripterygium wilfordii HOM05D001969 ORTHO05D009003 4.1e-30 135.2 135 60.0
MBI06_g08467_MAGBIO Magnolia biondii HOM05D001969 ORTHO05D009003 6.9e-30 134.4 148 64.2
Ciclev10017445m.g Citrus clementina HOM05D001969 ORTHO05D003463 1.5e-29 133.3 132 59.8
ATR1001G005 Amborella trichopoda HOM05D001969 ORTHO05D009003 3.4e-29 132.1 139 64.7
MD09G1092600 Malus domestica HOM05D001969 ORTHO05D009003 3.4e-29 132.1 139 67.6
Cfa003704 Carpinus fangiana HOM05D001969 ORTHO05D009003 5.9e-29 131.3 137 68.6
PGR142G0421 Punica granatum HOM05D001969 ORTHO05D003463 7.7e-29 131.0 127 73.2
Lalb_Chr19g0135421 Lupinus albus HOM05D001969 ORTHO05D009003 1.3e-28 130.2 134 68.7
unitig_748.g8143 Utricularia gibba HOM05D001969 ORTHO05D009003 2.2e-28 129.4 128 68.8
MD17G1082700 Malus domestica HOM05D001969 ORTHO05D009003 2.9e-28 129.0 130 71.5
Lj3g0006045 Lotus japonicus HOM05D001969 ORTHO05D009003 3.8e-28 128.6 138 65.2
CiPaw.16G086600 Carya illinoinensis HOM05D001969 ORTHO05D009003 6.5e-28 127.9 139 69.1
CDE04G1317 Ceratophyllum demersum HOM05D004539 ORTHO05D009003 6.5e-28 127.9 129 71.3
Lsat_1_v5_gn_2_3941 Lactuca sativa HOM05D001969 ORTHO05D009003 1.9e-27 126.3 125 46.4
Medtr4g065010 Medicago truncatula HOM05D001969 ORTHO05D009003 3.2e-27 125.6 132 68.2
AUR62029451 Chenopodium quinoa HOM05D001969 ORTHO05D009003 9.4e-27 124.0 130 63.8
GSVIVG01030575001 Vitis vinifera HOM05D001969 ORTHO05D009003 9.4e-27 124.0 119 72.3
Lj2g0006312 Lotus japonicus HOM05D001969 ORTHO05D009003 1.2e-26 123.6 138 63.8
Psat7g197120 Pisum sativum HOM05D001969 ORTHO05D009003 6.1e-26 121.3 127 68.5
Manes.13G150950 Manihot esculenta HOM05D001969 ORTHO05D009003 7.9e-26 120.9 83 67.5
Ca_20693_v3 Cicer arietinum L. HOM05D001969 ORTHO05D009003 1.0e-25 120.6 134 64.9
Ca_30106_v3 Cicer arietinum L. HOM05D001969 ORTHO05D009003 1.0e-25 120.6 134 64.9
Gorai.005G205100 Gossypium raimondii HOM05D001969 ORTHO05D003463 1.4e-25 120.2 121 76.0
Medtr4g046043 Medicago truncatula HOM05D001969 ORTHO05D009003 1.4e-25 120.2 127 66.1
EL10Ac3g05654 Beta vulgaris HOM05D001969 ORTHO05D003463 1.8e-25 119.8 138 64.5
Sed0013701 Sechium edule HOM05D001969 ORTHO05D009003 2.3e-25 119.4 89 58.4
Haze_15783 Corylus avellana HOM05D001969 ORTHO05D009003 3.9e-25 118.6 121 71.1
Sc03g0002190 Simmondsia chinensis HOM05D001969 ORTHO05D009003 5.1e-25 118.2 137 56.2
Eucgr.K00935 Eucalyptus grandis HOM05D001969 ORTHO05D009003 6.7e-25 117.9 136 61.8
FAN05G0495 Fragaria x ananassa HOM05D001969 ORTHO05D003463 8.8e-25 117.5 80 60.0
TPR.G21647 Trifolium pratense HOM05D001969 ORTHO05D009003 8.8e-25 117.5 127 67.7
SEGI_26592 Sequoiadendron giganteum HOM05D001969 ORTHO05D009003 2.6e-24 115.9 135 56.3
Mapoly0071s0092 Marchantia polymorpha HOM05D001969 ORTHO05D009003 2.2e-23 112.8 137 59.9
CsaV3_6G012510 Cucumis sativus L. HOM05D001969 ORTHO05D003463 8.2e-23 110.9 113 72.6
Manes.06G013500 Manihot esculenta HOM05D001969 ORTHO05D009003 3.1e-22 109.0 116 50.0
TPR.G31971 Trifolium pratense HOM05D001669 ORTHO05D006496 4.1e-22 108.6 82 54.9
PSO384G2148 Papaver somniferum HOM05D001969 ORTHO05D009003 2.6e-21 105.9 119 60.5
THA.LOC104811178 Tarenaya hassleriana HOM05D001969 ORTHO05D009003 2.6e-21 105.9 137 38.7
PSO339G1404 Papaver somniferum HOM05D001969 ORTHO05D009003 3.4e-21 105.5 132 56.8
Zm00001eb072880 Zea mays HOM05D001969 ORTHO05D009003 5.9e-21 104.8 126 60.3
Zm00001eb194600 Zea mays HOM05D001969 ORTHO05D009003 5.9e-21 104.8 128 60.2
Zm00001eb225500 Zea mays HOM05D001969 ORTHO05D009003 5.9e-21 104.8 128 60.2
Zm00001eb414500 Zea mays HOM05D001969 ORTHO05D009003 7.7e-21 104.4 128 59.4
Zm00001eb194610 Zea mays HOM05D001969 ORTHO05D009003 1.0e-20 104.0 128 59.4
Aa31LG9G15650 Aethionema arabicum HOM05D001969 ORTHO05D009003 3.8e-20 102.1 142 38.7
Hma1.2p1_0832F.1_g225700 Hydrangea macrophylla HOM05D001969 ORTHO05D009003 3.8e-20 102.1 136 62.5
Zm00001eb350110 Zea mays HOM05D001969 ORTHO05D009003 1.1e-19 100.5 128 57.0
Cpa.g.sc17.168 Carica papaya HOM05D001969 ORTHO05D003463 1.9e-19 99.8 125 60.8
Os07g0530300 Oryza sativa ssp. japonica HOM05D001969 ORTHO05D009003 2.5e-19 99.4 134 55.2
Rhsim04G0065900 Rhododendron simsii HOM05D001969 ORTHO05D003463 3.2e-19 99.0 101 76.2
Pp3c6_17280 Physcomitrium patens HOM05D001969 ORTHO05D009003 7.2e-19 97.8 137 55.5
HPP92_010084 Vanilla planifolia HOM05D001969 ORTHO05D009003 9.4e-19 97.4 138 58.0
HPP92_010093 Vanilla planifolia HOM05D001969 ORTHO05D009003 9.4e-19 97.4 138 58.0
PSO017G7338 Papaver somniferum HOM05D001969 ORTHO05D009003 3.6e-18 95.5 139 54.0
Ah.07g207260 Amaranthus hybridus HOM05D001969 ORTHO05D003463 4.8e-15 85.1 116 53.4
FAN02G3777 Fragaria x ananassa HOM05D001969 ORTHO05D009003 1.8e-14 83.2 96 61.5
AL3G54010 Arabidopsis lyrata HOM05D001969 ORTHO05D009003 2.4e-14 82.8 132 40.9
PSO675G3991 Papaver somniferum HOM05D001969 ORTHO05D009003 5.9e-13 78.2 153 34.6
MCO02G305 Micromonas commoda HOM05D001969 ORTHO05D009003 2.9e-12 75.9 125 47.2
Zm00001eb414510 Zea mays HOM05D001969 ORTHO05D009003 5.0e-12 75.1 62 51.6
BcaC07g41194 Brassica carinata HOM05D001969 ORTHO05D003463 5.5e-11 71.6 118 33.1
C08p42010 Brassica napus HOM05D001969 ORTHO05D003463 5.5e-11 71.6 118 33.1
BolC8t51763H Brassica oleracea HOM05D001969 ORTHO05D003463 5.5e-11 71.6 118 33.1
SMO351G0323 Selaginella moellendorffii HOM05D001969 ORTHO05D009003 9.4e-11 70.9 127 48.0
BcaB08g34941 Brassica carinata HOM05D001969 ORTHO05D003463 1.2e-10 70.5 121 31.4
A09p58710 Brassica napus HOM05D001969 ORTHO05D003463 1.6e-10 70.1 120 31.7
BraA09t41257Z Brassica rapa HOM05D001969 ORTHO05D003463 1.6e-10 70.1 120 31.7
Thhalv10001991m.g Eutrema salsugineum HOM05D001969 ORTHO05D003463 6.7e-09 64.7 119 29.4
Eucgr.K00932 Eucalyptus grandis HOM05D001969 ORTHO05D009003 2.0e-08 63.2 58 50.0
SEGI_19463 Sequoiadendron giganteum HOM05D004231 ORTHO05D004814 7.5e-08 61.2 132 40.2
Aa31LG8G17650 Aethionema arabicum HOM05D001969 ORTHO05D003463 6.3e-07 58.2 105 28.6
Cre02.g075550 Chlamydomonas reinhardtii HOM05D001969 ORTHO05D009003 6.3e-07 58.2 125 43.2


User provided reference genes

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