Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0006467g0030 Nicotiana tabacum HOM05D005013 ORTHO05D006005 1.2e-302 1042.7 551 100.0
Sopen03g039850 Solanum pennellii HOM05D005013 ORTHO05D006005 3.1e-237 825.5 553 81.0
Solyc03g121020.3 Solanum lycopersicum HOM05D005013 ORTHO05D006005 4.0e-237 825.1 553 81.0
CAN.G1143.13 Capsicum annuum HOM05D005013 ORTHO05D006005 5.2e-237 824.7 553 82.5
Nitab4.5_0006902g0030 Nicotiana tabacum HOM05D005013 ORTHO05D006005 3.0e-232 808.9 483 88.4
Peaxi162Scf00038g01028 Petunia axillaris HOM05D005013 ORTHO05D006005 2.1e-217 759.6 489 81.8
Cc04_g02560 Coffea canephora HOM05D005013 ORTHO05D006005 2.1e-201 706.4 552 70.5
CSS0033602 Camellia sinensis var. sinensis HOM05D005013 ORTHO05D006005 1.5e-196 690.3 550 67.8
Hma1.2p1_1232F.1_g268910 Hydrangea macrophylla HOM05D005013 ORTHO05D006005 8.5e-195 684.5 547 70.2
vmacro18853 Vaccinium macrocarpon HOM05D005013 ORTHO05D006005 5.5e-194 681.8 542 69.0
Lj9C512T10 Lonicera japonica HOM05D005013 ORTHO05D006005 3.0e-184 649.4 568 65.0
Duzib235G0505 Durio zibethinus HOM05D005013 ORTHO05D006005 3.1e-181 639.4 548 65.7
RcHm_v2.0_Chr2g0140531 Rosa chinensis HOM05D005013 ORTHO05D006005 1.7e-179 633.6 550 64.7
MELO3C024438.2 Cucumis melo HOM05D005013 ORTHO05D006005 2.9e-179 632.9 556 62.4
Glyma.07G015500 Glycine max HOM05D005013 ORTHO05D006005 2.9e-179 632.9 551 65.2
CAN.G1143.12 Capsicum annuum HOM05D005013 ORTHO05D006005 5.0e-179 632.1 515 67.0
CsaV3_7G035280 Cucumis sativus L. HOM05D005013 ORTHO05D006005 8.5e-179 631.3 523 64.6
Actinidia32097 Actinidia chinensis HOM05D005013 ORTHO05D006005 1.5e-178 630.6 512 66.0
TAR633G2449 Trochodendron aralioides HOM05D005013 ORTHO05D006005 2.5e-178 629.8 549 65.4
Thecc.06G100000 Theobroma cacao HOM05D005013 ORTHO05D006005 4.2e-178 629.0 548 65.3
ClCG09G000200 Citrullus lanatus HOM05D005013 ORTHO05D006005 5.5e-178 628.6 553 61.7
Rhsim08G0227500 Rhododendron simsii HOM05D005013 ORTHO05D006005 5.5e-178 628.6 538 65.4
FvH4_6g32381 Fragaria vesca HOM05D005013 ORTHO05D006005 9.4e-178 627.9 551 64.6
COL.COLO4_30512 Corchorus olitorius HOM05D005013 ORTHO05D006005 1.2e-177 627.5 548 63.9
Prupe.3G059100 Prunus persica HOM05D005013 ORTHO05D006005 2.1e-177 626.7 550 64.5
Ciclev10025066m.g Citrus clementina HOM05D005013 ORTHO05D006005 4.7e-177 625.5 547 64.9
Prupe.1G178600 Prunus persica HOM05D005013 ORTHO05D006005 4.7e-177 625.5 546 65.2
FAN14G4508 Fragaria x ananassa HOM05D005013 ORTHO05D006005 8.0e-177 624.8 551 64.2
VMungo0331G0134 Vigna mungo HOM05D005013 ORTHO05D006005 1.0e-176 624.4 550 64.7
Psat2g107800 Pisum sativum HOM05D005013 ORTHO05D006005 1.8e-176 623.6 515 68.2
Lalb_Chr22g0351551 Lupinus albus HOM05D005013 ORTHO05D006005 3.0e-176 622.9 548 63.5
MSTRG.4752 Avicennia marina HOM05D005013 ORTHO05D006005 4.0e-176 622.5 547 64.4
Lj3g0013010 Lotus japonicus HOM05D005013 ORTHO05D006005 5.2e-176 622.1 553 65.6
MD17G1184000 Malus domestica HOM05D005013 ORTHO05D006005 5.2e-176 622.1 550 64.5
Duzib192G0488 Durio zibethinus HOM05D005013 ORTHO05D006005 6.7e-176 621.7 550 64.5
FAN05G1466 Fragaria x ananassa HOM05D005013 ORTHO05D006005 6.7e-176 621.7 551 64.2
Glyma.08G201000 Glycine max HOM05D005013 ORTHO05D006005 6.7e-176 621.7 551 64.8
QL05p020046 Quercus lobata HOM05D005013 ORTHO05D006005 8.8e-176 621.3 549 64.5
Gohir.A09G081200 Gossypium hirsutum HOM05D005013 ORTHO05D006005 2.0e-175 620.2 548 64.1
Gohir.D09G081300 Gossypium hirsutum HOM05D005013 ORTHO05D006005 2.0e-175 620.2 548 63.9
MD09G1202900 Malus domestica HOM05D005013 ORTHO05D006005 2.0e-175 620.2 547 64.5
Phvul.010G145300 Phaseolus vulgaris HOM05D005013 ORTHO05D006005 2.0e-175 620.2 550 64.0
Gorai.006G096900 Gossypium raimondii HOM05D005013 ORTHO05D006005 2.6e-175 619.8 548 63.7
FAN02G3590 Fragaria x ananassa HOM05D005013 ORTHO05D006005 9.7e-175 617.8 551 64.1
arahy.Tifrunner.gnm1.ann1.1M6YYJ Arachis hypogaea HOM05D005013 ORTHO05D006005 3.7e-174 615.9 546 65.2
SalBow7G4596 Salvia bowleyana HOM05D005013 ORTHO05D006005 8.2e-174 614.8 545 63.7
Medtr8g014460 Medicago truncatula HOM05D005013 ORTHO05D006005 4.1e-173 612.5 486 66.7
arahy.Tifrunner.gnm1.ann1.R367CR Arachis hypogaea HOM05D005013 ORTHO05D006005 7.0e-173 611.7 546 64.8
FAN09G0199 Fragaria x ananassa HOM05D005013 ORTHO05D006005 7.0e-173 611.7 553 63.7
HanXRQChr02g0032251 Helianthus annuus HOM05D005013 ORTHO05D006005 9.1e-173 611.3 559 63.1
Sed0027607 Sechium edule HOM05D005013 ORTHO05D006005 5.9e-172 608.6 548 60.6
Gorai.003G061700 Gossypium raimondii HOM05D005013 ORTHO05D006005 3.8e-171 605.9 549 62.8
Manes.04G134200 Manihot esculenta HOM05D005013 ORTHO05D006005 5.0e-171 605.5 548 61.9
Oeu026781.2 Olea europaea HOM05D005013 ORTHO05D006005 1.1e-170 604.4 533 61.5
unitig_52.g17097 Utricularia gibba HOM05D005013 ORTHO05D006005 1.5e-170 604.0 529 62.2
PGR102G0015 Punica granatum HOM05D005013 ORTHO05D006005 5.5e-170 602.1 549 64.1
CANSAT56G0983 Cannabis sativa HOM05D005013 ORTHO05D006005 9.4e-170 601.3 551 60.3
TPR.G26938 Trifolium pratense HOM05D005013 ORTHO05D006005 1.2e-169 600.9 485 65.6
Gohir.D03G057900 Gossypium hirsutum HOM05D005013 ORTHO05D006005 1.6e-169 600.5 497 65.8
GSVIVG01016983001 Vitis vinifera HOM05D005013 ORTHO05D006005 2.7e-169 599.7 454 68.3
Gohir.A02G117400 Gossypium hirsutum HOM05D005013 ORTHO05D006005 1.2e-167 594.3 548 60.4
ECA247G2560 Erigeron canadensis HOM05D005013 ORTHO05D006005 2.0e-167 593.6 549 59.9
Lalb_Chr04g0262971 Lupinus albus HOM05D005013 ORTHO05D006005 9.8e-167 591.3 549 61.7
Potri.001G190000 Populus trichocarpa HOM05D005013 ORTHO05D006005 1.3e-166 590.9 552 60.1
Lsat_1_v5_gn_4_97461 Lactuca sativa HOM05D005013 ORTHO05D006005 1.7e-166 590.5 554 61.6
CiPaw.02G145800 Carya illinoinensis HOM05D005013 ORTHO05D006005 3.7e-166 589.3 534 63.9
Sabra01G0151600 Salix brachista HOM05D005013 ORTHO05D006005 1.1e-165 587.8 552 60.5
Ca_23262_v3 Cicer arietinum L. HOM05D005013 ORTHO05D006005 2.4e-165 586.6 435 68.3
Haze_15847 Corylus avellana HOM05D005013 ORTHO05D006005 9.1e-165 584.7 550 63.1
Manes.11G033651 Manihot esculenta HOM05D005013 ORTHO05D006005 1.2e-164 584.3 551 61.0
DCAR_016188 Daucus carota HOM05D005013 ORTHO05D006005 4.5e-164 582.4 550 59.3
Nn2g11173 Nelumbo nucifera HOM05D005013 ORTHO05D006005 4.5e-164 582.4 547 61.4
Lsat_1_v5_gn_1_36740 Lactuca sativa HOM05D005013 ORTHO05D006005 2.2e-163 580.1 491 64.0
Aqoxy2G02285 Aquilegia oxysepala HOM05D005013 ORTHO05D006005 1.1e-162 577.8 555 59.1
PSO339G6278 Papaver somniferum HOM05D005013 ORTHO05D006005 1.9e-162 577.0 512 62.1
SGA_v2.0_scaffold4G02026 Striga asiatica HOM05D005013 ORTHO05D006005 7.2e-162 575.1 476 66.4
PSO513G0173 Papaver somniferum HOM05D005013 ORTHO05D006005 2.7e-161 573.2 512 62.5
arahy.Tifrunner.gnm1.ann1.VUMD9N Arachis hypogaea HOM05D005013 ORTHO05D006005 3.6e-161 572.8 601 57.9
Atru.chr1.3523 Acer truncatum HOM05D005013 ORTHO05D006005 4.7e-161 572.4 492 61.6
Carub.0002s2777 Capsella rubella HOM05D005013 ORTHO05D006005 3.0e-160 569.7 546 61.2
Aa31LG4G90 Aethionema arabicum HOM05D005013 ORTHO05D006005 6.8e-160 568.5 548 59.1
Potri.003G048900 Populus trichocarpa HOM05D005013 ORTHO05D006005 6.8e-160 568.5 547 61.2
Eucgr.F03078 Eucalyptus grandis HOM05D005013 ORTHO05D006005 2.6e-159 566.6 550 60.9
TWI12G0488 Tripterygium wilfordii HOM05D005013 ORTHO05D006005 5.4e-157 558.9 554 57.9
HanXRQChr09g0276241 Helianthus annuus HOM05D005013 ORTHO05D006005 2.7e-156 556.6 557 56.2
Ca_23271_v3 Cicer arietinum L. HOM05D005013 ORTHO05D006005 4.5e-156 555.8 486 62.1
Sp5g36040 Schrenkiella parvula HOM05D005013 ORTHO05D006005 1.7e-155 553.9 546 59.3
THA.LOC104819998 Tarenaya hassleriana HOM05D005013 ORTHO05D006005 1.7e-155 553.9 454 63.7
MBI04_g36817_MAGBIO Magnolia biondii HOM05D005013 ORTHO05D006005 2.9e-155 553.1 554 58.3
TAR623G0538 Trochodendron aralioides HOM05D005013 ORTHO05D006005 2.9e-155 553.1 425 67.1
Hund07600 Selenicereus undatus HOM05D005013 ORTHO05D006005 3.8e-155 552.7 521 60.3
Thhalv10018561m.g Eutrema salsugineum HOM05D005013 ORTHO05D006005 5.6e-154 548.9 466 62.2
TWI75G0851 Tripterygium wilfordii HOM05D005013 ORTHO05D006005 5.6e-154 548.9 553 59.0
AT1G79730 Arabidopsis thaliana HOM05D005013 ORTHO05D006005 6.4e-150 535.4 553 58.6
A10p33120 Brassica napus HOM05D005013 ORTHO05D006005 2.1e-145 520.4 459 59.0
BcaC06g31994 Brassica carinata HOM05D005013 ORTHO05D006005 1.4e-144 517.7 464 58.4
EL10Ac9g21206 Beta vulgaris HOM05D005013 ORTHO05D006005 3.1e-144 516.5 552 54.7
Dinv30436 Davidia involucrata HOM05D005013 ORTHO05D006005 4.4e-143 512.7 407 70.8
C09p74080 Brassica napus HOM05D005013 ORTHO05D006005 2.9e-142 510.0 408 62.7
Duzib160G0376 Durio zibethinus HOM05D005013 ORTHO05D006005 1.2e-140 504.6 555 53.7
BolC9t60139H Brassica oleracea HOM05D005013 ORTHO05D006005 7.8e-140 501.9 486 55.8
Ah.01g005800 Amaranthus hybridus HOM05D005013 ORTHO05D006005 1.0e-139 501.5 540 52.0
ATR0661G470 Amborella trichopoda HOM05D005013 ORTHO05D006005 6.6e-139 498.8 481 58.0
AUR62022205 Chenopodium quinoa HOM05D005013 ORTHO05D006005 6.6e-139 498.8 547 53.4
AUR62031914 Chenopodium quinoa HOM05D005013 ORTHO05D006005 1.4e-136 491.1 547 53.7
AL2G41830 Arabidopsis lyrata HOM05D005013 ORTHO05D006005 2.9e-134 483.4 513 56.7
arahy.Tifrunner.gnm1.ann1.YYV7TY Arachis hypogaea HOM05D005013 ORTHO05D006005 1.9e-133 480.7 562 52.5
Os08g0157100 Oryza sativa ssp. japonica HOM05D005013 ORTHO05D006005 2.3e-131 473.8 486 54.3
Migut.D00991 Erythranthe guttata HOM05D005013 ORTHO05D006005 9.5e-130 468.4 402 61.9
Zm00001eb415930 Zea mays HOM05D005013 ORTHO05D006005 1.2e-129 468.0 441 57.4
CDE12G0264 Ceratophyllum demersum HOM05D005013 ORTHO05D006005 5.8e-119 432.6 477 53.0
Actinidia21716 Actinidia chinensis HOM05D005013 ORTHO05D006005 3.6e-113 413.3 384 59.6
Zm00001eb172540 Zea mays HOM05D005013 ORTHO05D006005 4.8e-113 412.9 350 60.3
Sc15g0001880 Simmondsia chinensis HOM05D005013 ORTHO05D006005 1.7e-110 404.4 374 63.1
Mapoly0123s0029 Marchantia polymorpha HOM05D005013 ORTHO05D006005 9.0e-104 382.1 494 45.3
BcaNung02135 Brassica carinata HOM05D005013 ORTHO05D006005 2.6e-103 380.6 380 54.7
SMO116G0383 Selaginella moellendorffii HOM05D005013 ORTHO05D006005 3.9e-99 366.7 387 52.5
Pp3c1_7460 Physcomitrium patens HOM05D005013 ORTHO05D006005 1.3e-97 361.7 471 45.6
AagrBONN_evm.TU.Sc2ySwM_117.3356 Anthoceros agrestis HOM05D005013 ORTHO05D006005 1.4e-96 358.2 457 47.0
TAR369G0672 Trochodendron aralioides HOM05D005013 ORTHO05D006005 3.7e-89 333.6 482 44.2
AL2G41840 Arabidopsis lyrata HOM05D005013 ORTHO05D006005 6.1e-84 316.2 255 65.1
SHI11095 Sapria himalayana HOM05D005013 ORTHO05D006005 1.0e-83 315.5 442 47.5
HPP92_015196 Vanilla planifolia HOM05D005013 ORTHO05D006005 1.5e-79 301.6 332 57.5
Cpa.g.sc109.3 Carica papaya HOM05D005013 ORTHO05D006005 1.7e-70 271.6 211 67.3
CDE06G0689 Ceratophyllum demersum HOM05D005013 ORTHO05D006005 6.1e-68 263.1 395 42.5
Ah.01g022080 Amaranthus hybridus HOM05D005013 ORTHO05D006005 1.8e-67 261.5 523 37.7
Cpa.g.sc109.1 Carica papaya HOM05D005013 ORTHO05D006005 9.7e-66 255.8 281 59.4
CBR_g8033 Chara braunii HOM05D005013 ORTHO05D006005 9.7e-66 255.8 410 38.5
BraA10t45345Z Brassica rapa HOM05D005013 ORTHO05D006005 8.2e-65 252.7 211 63.5
HPP92_015185 Vanilla planifolia HOM05D005013 ORTHO05D006005 2.7e-52 211.1 186 58.6
Migut.I00890 Erythranthe guttata HOM05D005013 ORTHO05D006005 6.3e-49 199.9 521 31.9
Lj5C53T3 Lonicera japonica HOM05D005013 ORTHO05D006005 1.1e-48 199.1 208 51.0
Oeu023599.1 Olea europaea HOM05D005013 ORTHO05D006005 5.9e-47 193.4 133 70.7
CARHR074670 Cardamine hirsuta HOM05D005013 ORTHO05D006005 1.2e-36 159.1 187 57.2
Psat4g155920 Pisum sativum HOM05D001854 ORTHO05D001800 3.3e-29 134.4 110 60.9
Psat4g155880 Pisum sativum HOM05D001854 ORTHO05D001800 7.3e-29 133.3 110 60.9
Lsat_1_v5_gn_6_46660 Lactuca sativa HOM05D005013 ORTHO05D006005 9.8e-26 122.9 95 62.1
Nn2g13410 Nelumbo nucifera HOM05D005013 ORTHO05D006005 1.6e-23 115.5 121 57.9
Oeu023601.1 Olea europaea HOM05D005013 ORTHO05D006005 2.0e-23 115.2 128 55.5
CAN.G907.1 Capsicum annuum HOM05D005013 ORTHO05D006005 3.0e-22 111.3 118 52.5
Cre12.g520250 Chlamydomonas reinhardtii HOM05D005013 ORTHO05D006005 1.4e-19 102.4 300 30.3
Oeu026780.1 Olea europaea HOM05D005013 ORTHO05D006005 2.6e-18 98.2 128 60.2
CAN.G1143.9 Capsicum annuum HOM05D000602 ORTHO05D001147 1.7e-17 95.5 142 43.0
TAR560G0009 Trochodendron aralioides HOM05D005013 ORTHO05D006005 3.7e-17 94.4 124 61.3
vmacro04324 Vaccinium macrocarpon HOM05D005013 ORTHO05D006005 1.4e-16 92.4 123 45.5
MCO01G084 Micromonas commoda HOM05D005013 ORTHO05D006005 7.8e-15 86.7 385 24.2
CAN.G1143.11 Capsicum annuum HOM05D005013 ORTHO05D115532 1.3e-14 85.9 44 93.2
AL2G25330 Arabidopsis lyrata HOM05D005013 ORTHO05D006005 1.7e-14 85.5 111 46.8
Lsat_1_v5_gn_1_14160 Lactuca sativa HOM05D005013 ORTHO05D006005 2.1e-12 78.6 117 41.0
CBR_g48652 Chara braunii HOM05D005013 ORTHO05D006005 2.9e-09 68.2 191 28.3
SEGI_39677 Sequoiadendron giganteum HOM05D050634 ORTHO05D006005 1.6e-07 62.4 113 37.2
Lsat_1_v5_gn_5_133740 Lactuca sativa HOM05D000912 ORTHO05D021086 4.6e-07 60.8 51 64.7
Sopen03g039840 Solanum pennellii HOM05D057476 ORTHO05D051103 6.0e-07 60.5 136 34.6
Sopen12g008550 Solanum pennellii HOM05D000006 ORTHO05D000695 5.1e-06 57.4 50 58.0


User provided reference genes

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