Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0006462g0010 Nicotiana tabacum HOM05D003238 ORTHO05D003571 4.0e-78 294.7 147 100.0
Nitab4.5_0005918g0030 Nicotiana tabacum HOM05D003238 ORTHO05D003571 4.5e-21 105.1 58 87.9
Sopen06g022220 Solanum pennellii HOM05D003238 ORTHO05D003571 5.5e-19 98.2 59 83.1
Solyc06g062765.1 Solanum lycopersicum HOM05D003238 ORTHO05D003571 8.0e-18 94.4 58 81.0
Nitab4.5_0000255g0290 Nicotiana tabacum HOM05D003238 ORTHO05D003571 1.4e-17 93.6 49 91.8
Dinv37898 Davidia involucrata HOM05D003238 ORTHO05D003571 5.7e-16 88.2 54 75.9
Nitab4.5_0004020g0010 Nicotiana tabacum HOM05D004841 ORTHO05D005874 1.7e-15 86.7 47 93.6
Nitab4.5_0000501g0020 Nicotiana tabacum HOM05D004841 ORTHO05D005874 6.3e-15 84.7 47 91.5
Actinidia39103 Actinidia chinensis HOM05D003238 ORTHO05D003571 1.8e-14 83.2 57 66.7
Rhsim08G0235200 Rhododendron simsii HOM05D003238 ORTHO05D003571 7.0e-14 81.3 57 68.4
Gohir.D10G059800 Gossypium hirsutum HOM05D003238 ORTHO05D003571 9.2e-14 80.9 53 71.7
Gorai.011G063800 Gossypium raimondii HOM05D003238 ORTHO05D003571 1.2e-13 80.5 53 71.7
COL.COLO4_30681 Corchorus olitorius HOM05D003238 ORTHO05D003571 1.6e-13 80.1 53 71.7
TAR624G1148 Trochodendron aralioides HOM05D003238 ORTHO05D003571 1.6e-13 80.1 48 75.0
THA.LOC109116473 Tarenaya hassleriana HOM05D003238 ORTHO05D003571 2.0e-13 79.7 53 69.8
Nn6g35523 Nelumbo nucifera HOM05D003238 ORTHO05D003571 3.5e-13 79.0 54 63.0
Cfa003563 Carpinus fangiana HOM05D003238 ORTHO05D003571 4.5e-13 78.6 54 66.7
Gohir.A10G058000 Gossypium hirsutum HOM05D003238 ORTHO05D003571 4.5e-13 78.6 52 71.2
QL05p009982 Quercus lobata HOM05D003238 ORTHO05D003571 4.5e-13 78.6 56 66.1
CSS0012761 Camellia sinensis var. sinensis HOM05D003238 ORTHO05D003571 5.9e-13 78.2 58 63.8
CSS0032672 Camellia sinensis var. sinensis HOM05D003238 ORTHO05D003571 5.9e-13 78.2 58 63.8
Haze_15983 Corylus avellana HOM05D003238 ORTHO05D003571 5.9e-13 78.2 58 65.5
Thecc.06G114200 Theobroma cacao HOM05D003238 ORTHO05D003571 5.9e-13 78.2 52 71.2
Cc04_g01740 Coffea canephora HOM05D003238 ORTHO05D003571 1.0e-12 77.4 54 66.7
Glyma.07G008200 Glycine max HOM05D003238 ORTHO05D003571 2.3e-12 76.3 54 64.8
Glyma.08G191200 Glycine max HOM05D003238 ORTHO05D003571 2.3e-12 76.3 53 66.0
Duzib160G0096 Durio zibethinus HOM05D003238 ORTHO05D003571 3.8e-12 75.5 53 64.2
DCAR_026391 Daucus carota HOM05D003238 ORTHO05D003571 5.0e-12 75.1 48 70.8
vmacro17137 Vaccinium macrocarpon HOM05D003238 ORTHO05D003571 6.6e-12 74.7 57 61.4
Potri.017G119600 Populus trichocarpa HOM05D003238 ORTHO05D003571 1.1e-11 73.9 52 65.4
Actinidia39710 Actinidia chinensis HOM05D003238 ORTHO05D003571 1.5e-11 73.6 56 62.5
Ciclev10026836m.g Citrus clementina HOM05D003238 ORTHO05D003571 1.5e-11 73.6 54 63.0
Hma1.2p1_0169F.1_g074900 Hydrangea macrophylla HOM05D003238 ORTHO05D003571 1.5e-11 73.6 82 48.8
Nitab4.5_0000415g0010 Nicotiana tabacum HOM05D003238 ORTHO05D003571 1.5e-11 73.6 42 83.3
Phvul.010G137200 Phaseolus vulgaris HOM05D003238 ORTHO05D003571 1.9e-11 73.2 54 61.1
PGR102G1556 Punica granatum HOM05D003238 ORTHO05D003571 1.9e-11 73.2 74 55.4
Actinidia25242 Actinidia chinensis HOM05D003238 ORTHO05D003571 3.3e-11 72.4 58 62.1
Cfa003064 Carpinus fangiana HOM05D003238 ORTHO05D003571 3.3e-11 72.4 54 63.0
CiPaw.01G223100 Carya illinoinensis HOM05D003238 ORTHO05D003571 3.3e-11 72.4 55 63.6
Rhsim05G0017200 Rhododendron simsii HOM05D003238 ORTHO05D003571 3.3e-11 72.4 56 62.5
Sc15g0000270 Simmondsia chinensis HOM05D003238 ORTHO05D003571 3.3e-11 72.4 56 57.1
Solyc02g078830.4 Solanum lycopersicum HOM05D004841 ORTHO05D005874 3.3e-11 72.4 47 76.6
Sopen02g023650 Solanum pennellii HOM05D004841 ORTHO05D005874 3.3e-11 72.4 47 76.6
PGSC0003DMG400004852 Solanum tuberosum HOM05D003238 ORTHO05D003571 3.3e-11 72.4 39 87.2
Cpa.g.sc25.72 Carica papaya HOM05D003238 ORTHO05D003571 4.3e-11 72.0 56 64.3
Haze_25933 Corylus avellana HOM05D003238 ORTHO05D003571 4.3e-11 72.0 53 60.4
MELO3C024380.2 Cucumis melo HOM05D003238 ORTHO05D003571 4.3e-11 72.0 57 57.9
PGSC0003DMG400022420 Solanum tuberosum HOM05D004841 ORTHO05D005874 4.3e-11 72.0 47 76.6
Sed0015805 Sechium edule HOM05D003238 ORTHO05D003571 7.3e-11 71.2 47 70.2
Lj3g0007714 Lotus japonicus HOM05D003238 ORTHO05D003571 9.5e-11 70.9 52 61.5
VMungo0720G2789 Vigna mungo HOM05D003238 ORTHO05D003571 1.6e-10 70.1 53 58.5
MSTRG.4775 Avicennia marina HOM05D003238 ORTHO05D003571 2.1e-10 69.7 49 71.4
CsaV3_7G034700 Cucumis sativus L. HOM05D003238 ORTHO05D003571 2.8e-10 69.3 51 60.8
Medtr8g017610 Medicago truncatula HOM05D003238 ORTHO05D003571 3.6e-10 68.9 43 72.1
QL02p062228 Quercus lobata HOM05D003238 ORTHO05D003571 3.6e-10 68.9 45 66.7
Aa31LG4G3050 Aethionema arabicum HOM05D003238 ORTHO05D003571 4.7e-10 68.6 52 63.5
Ca_23334_v3 Cicer arietinum L. HOM05D003238 ORTHO05D003571 4.7e-10 68.6 53 58.5
Oeu017609.1 Olea europaea HOM05D003238 ORTHO05D003571 4.7e-10 68.6 48 66.7
HPP92_007657 Vanilla planifolia HOM05D003238 ORTHO05D003571 4.7e-10 68.6 103 39.8
CANSAT56G1439 Cannabis sativa HOM05D003238 ORTHO05D003571 6.1e-10 68.2 55 61.8
ClCG09G000780 Citrullus lanatus HOM05D003238 ORTHO05D003571 6.1e-10 68.2 53 56.6
Atru.chr1.3787 Acer truncatum HOM05D003238 ORTHO05D003571 1.0e-09 67.4 47 61.7
Dinv36782 Davidia involucrata HOM05D003238 ORTHO05D003571 1.0e-09 67.4 53 54.7
Psat4g187480 Pisum sativum HOM05D003238 ORTHO05D003571 1.0e-09 67.4 54 57.4
A09p28910 Brassica napus HOM05D003238 ORTHO05D003571 2.3e-09 66.2 56 57.1
C06p34720 Brassica napus HOM05D003238 ORTHO05D003571 2.3e-09 66.2 56 57.1
BraA09t38454Z Brassica rapa HOM05D003238 ORTHO05D003571 2.3e-09 66.2 56 57.1
Carub.0002s1954 Capsella rubella HOM05D003238 ORTHO05D003571 3.1e-09 65.9 56 51.8
Peaxi162Scf00465g00119 Petunia axillaris HOM05D004841 ORTHO05D005874 3.1e-09 65.9 42 78.6
Potri.004G095300 Populus trichocarpa HOM05D003238 ORTHO05D003571 4.0e-09 65.5 59 57.6
RcHm_v2.0_Chr2g0093691 Rosa chinensis HOM05D003238 ORTHO05D003571 4.0e-09 65.5 55 58.2
HPP92_005498 Vanilla planifolia HOM05D003238 ORTHO05D003571 4.0e-09 65.5 48 62.5
Aqoxy7G04029 Aquilegia oxysepala HOM05D003238 ORTHO05D003571 6.8e-09 64.7 53 54.7
CARHR065610 Cardamine hirsuta HOM05D003238 ORTHO05D003571 6.8e-09 64.7 56 55.4
Cc00_g10140 Coffea canephora HOM05D001135 ORTHO05D001005 6.8e-09 64.7 56 60.7
Thhalv10019375m.g Eutrema salsugineum HOM05D003238 ORTHO05D003571 6.8e-09 64.7 52 57.7
Thecc.09G086100 Theobroma cacao HOM05D003238 ORTHO05D003571 6.8e-09 64.7 52 59.6
Manes.11G024400 Manihot esculenta HOM05D003238 ORTHO05D003571 8.9e-09 64.3 54 57.4
Nitab4.5_0002824g0070 Nicotiana tabacum HOM05D003238 ORTHO05D003571 8.9e-09 64.3 57 52.6
TWI79G0340 Tripterygium wilfordii HOM05D003238 ORTHO05D003571 8.9e-09 64.3 45 66.7
arahy.Tifrunner.gnm1.ann1.7T9QNI Arachis hypogaea HOM05D003238 ORTHO05D003571 1.2e-08 63.9 54 55.6
Prupe.7G206700 Prunus persica HOM05D003238 ORTHO05D003571 1.2e-08 63.9 54 57.4
MD15G1209800 Malus domestica HOM05D003238 ORTHO05D003571 1.5e-08 63.5 52 59.6
PSO210G1081 Papaver somniferum HOM05D003238 ORTHO05D003571 1.5e-08 63.5 43 65.1
PSO210G2488 Papaver somniferum HOM05D003238 ORTHO05D003571 1.5e-08 63.5 43 65.1
Potri.006G148000 Populus trichocarpa HOM05D003238 ORTHO05D003571 1.5e-08 63.5 71 47.9
Sabra06G0117100 Salix brachista HOM05D003238 ORTHO05D003571 1.5e-08 63.5 46 60.9
Sed0010916 Sechium edule HOM05D003238 ORTHO05D003571 1.5e-08 63.5 54 51.9
GSVIVG01016802001 Vitis vinifera HOM05D003238 ORTHO05D003571 1.5e-08 63.5 58 58.6
AUR62009849 Chenopodium quinoa HOM05D003238 ORTHO05D003571 2.0e-08 63.2 55 56.4
Eucgr.C00871 Eucalyptus grandis HOM05D003238 ORTHO05D003571 2.0e-08 63.2 60 51.7
FAN23G0786 Fragaria x ananassa HOM05D003238 ORTHO05D003571 2.0e-08 63.2 55 56.4
FAN26G0800 Fragaria x ananassa HOM05D003238 ORTHO05D003571 2.0e-08 63.2 55 56.4
Sp5g27750 Schrenkiella parvula HOM05D003238 ORTHO05D003571 2.0e-08 63.2 54 55.6
Lalb_Chr04g0263271 Lupinus albus HOM05D003238 ORTHO05D003571 2.6e-08 62.8 53 54.7
Phvul.009G231100 Phaseolus vulgaris HOM05D003238 ORTHO05D003571 2.6e-08 62.8 58 53.4
vmacro23045 Vaccinium macrocarpon HOM05D003238 ORTHO05D003571 2.6e-08 62.8 41 68.3
AT1G72690 Arabidopsis thaliana HOM05D003238 ORTHO05D003571 3.4e-08 62.4 56 58.9
EL10Ac7g16367 Beta vulgaris HOM05D003238 ORTHO05D003571 3.4e-08 62.4 46 67.4
MBI04_g36912_MAGBIO Magnolia biondii HOM05D003238 ORTHO05D003571 3.4e-08 62.4 50 60.0
Atru.chr10.1099 Acer truncatum HOM05D004841 ORTHO05D005874 4.4e-08 62.0 40 80.0
Ciclev10009462m.g Citrus clementina HOM05D003238 ORTHO05D003571 4.4e-08 62.0 76 47.4
Oeu004201.1 Olea europaea HOM05D003238 ORTHO05D003571 4.4e-08 62.0 52 59.6
Peaxi162Scf00498g00436 Petunia axillaris HOM05D003238 ORTHO05D003571 5.8e-08 61.6 46 60.9
CiPaw.03G213000 Carya illinoinensis HOM05D003238 ORTHO05D003571 7.5e-08 61.2 56 51.8
Duzib168G0217 Durio zibethinus HOM05D003238 ORTHO05D003571 7.5e-08 61.2 54 57.4
COL.COLO4_18181 Corchorus olitorius HOM05D003238 ORTHO05D003571 9.8e-08 60.8 47 57.4
ECA247G2422 Erigeron canadensis HOM05D003238 ORTHO05D003571 9.8e-08 60.8 41 68.3
TWI32G0644 Tripterygium wilfordii HOM05D003238 ORTHO05D003571 9.8e-08 60.8 58 51.7
BraA10t43522Z Brassica rapa HOM05D003238 ORTHO05D003571 1.3e-07 60.5 54 53.7
FAN26G1453 Fragaria x ananassa HOM05D003238 ORTHO05D003571 1.3e-07 60.5 55 52.7
GSVIVG01015179001 Vitis vinifera HOM05D003238 ORTHO05D003571 1.3e-07 60.5 47 59.6
AL2G32370 Arabidopsis lyrata HOM05D003238 ORTHO05D003571 1.7e-07 60.1 56 53.6
arahy.Tifrunner.gnm1.ann1.HS5001 Arachis hypogaea HOM05D003238 ORTHO05D003571 1.7e-07 60.1 42 64.3
Migut.D00960 Erythranthe guttata HOM05D003238 ORTHO05D003571 1.7e-07 60.1 61 49.2
FAN28G2679 Fragaria x ananassa HOM05D003238 ORTHO05D003571 1.7e-07 60.1 55 54.5
Dinv21532 Davidia involucrata HOM05D004841 ORTHO05D005874 2.2e-07 59.7 41 73.2
FvH4_1g07820 Fragaria vesca HOM05D003238 ORTHO05D003571 2.2e-07 59.7 55 54.5
FAN19G2918 Fragaria x ananassa HOM05D003238 ORTHO05D003571 2.2e-07 59.7 55 54.5
MD02G1082200 Malus domestica HOM05D003238 ORTHO05D003571 2.2e-07 59.7 53 54.7
Manes.17G073300 Manihot esculenta HOM05D004841 ORTHO05D005874 2.2e-07 59.7 37 78.4
Ciclev10015824m.g Citrus clementina HOM05D004841 ORTHO05D005874 2.9e-07 59.3 42 69.0
Lj4C292G2 Lonicera japonica HOM05D003238 ORTHO05D003571 2.9e-07 59.3 55 50.9
TAR628G1076 Trochodendron aralioides HOM05D004841 ORTHO05D005874 2.9e-07 59.3 41 73.2
CANSAT56G2721 Cannabis sativa HOM05D003238 ORTHO05D003571 3.7e-07 58.9 73 45.2
Nn3g20436 Nelumbo nucifera HOM05D004841 ORTHO05D005874 3.7e-07 58.9 48 54.2
TPR.G27679 Trifolium pratense HOM05D003238 ORTHO05D003571 3.7e-07 58.9 46 58.7
BcaB05g22307 Brassica carinata HOM05D003238 ORTHO05D003571 4.9e-07 58.5 53 56.6
Nitab4.5_0009992g0010 Nicotiana tabacum HOM05D003238 ORTHO05D003571 4.9e-07 58.5 56 48.2
Ca_26161_v3 Cicer arietinum L. HOM05D003238 ORTHO05D003571 6.4e-07 58.2 72 48.6
Duzib235G0160 Durio zibethinus HOM05D004841 ORTHO05D005874 6.4e-07 58.2 39 74.4
Gohir.D10G043800 Gossypium hirsutum HOM05D004841 ORTHO05D005874 6.4e-07 58.2 36 77.8
Gorai.001G012800 Gossypium raimondii HOM05D003238 ORTHO05D003571 6.4e-07 58.2 57 54.4
Gorai.011G046600 Gossypium raimondii HOM05D004841 ORTHO05D005874 6.4e-07 58.2 36 77.8
MD10G1259100 Malus domestica HOM05D004841 ORTHO05D005874 6.4e-07 58.2 37 78.4
TWI63G0939 Tripterygium wilfordii HOM05D004841 ORTHO05D005874 6.4e-07 58.2 37 73.0
Prupe.4G084200 Prunus persica HOM05D004841 ORTHO05D005874 8.3e-07 57.8 36 77.8
CiPaw.10G089600 Carya illinoinensis HOM05D004841 ORTHO05D005874 1.1e-06 57.4 48 64.6
Hund20825 Selenicereus undatus HOM05D003238 ORTHO05D003571 1.1e-06 57.4 48 56.2
ATR0789G083 Amborella trichopoda HOM05D003238 ORTHO05D003571 1.4e-06 57.0 48 58.3
Sed0021741 Sechium edule HOM05D004841 ORTHO05D005874 1.4e-06 57.0 41 65.9
Solyc12g008950.2 Solanum lycopersicum HOM05D003238 ORTHO05D003571 1.4e-06 57.0 46 58.7
CDE05G2517 Ceratophyllum demersum HOM05D003238 ORTHO05D003571 1.9e-06 56.6 48 60.4
Gohir.D07G012200 Gossypium hirsutum HOM05D001717 ORTHO05D007217 1.9e-06 56.6 54 57.4
Lsat_1_v5_gn_4_29561 Lactuca sativa HOM05D004841 ORTHO05D005874 1.9e-06 56.6 41 65.9
HanXRQChr17g0564621 Helianthus annuus HOM05D004841 ORTHO05D005874 2.4e-06 56.2 41 65.9
MBI02_g29870_MAGBIO Magnolia biondii HOM05D004841 ORTHO05D005874 2.4e-06 56.2 36 72.2
MD05G1280700 Malus domestica HOM05D004841 ORTHO05D005874 2.4e-06 56.2 36 77.8
Eucgr.E02427 Eucalyptus grandis HOM05D004841 ORTHO05D005874 3.2e-06 55.8 40 62.5
QL05p055481 Quercus lobata HOM05D004841 ORTHO05D005874 3.2e-06 55.8 37 75.7
Ah.08g211520 Amaranthus hybridus HOM05D004841 ORTHO05D005874 4.1e-06 55.5 41 65.9
Hma1.2p1_0594F.1_g185890 Hydrangea macrophylla HOM05D004841 ORTHO05D005874 4.1e-06 55.5 41 65.9
Manes.16G100500 Manihot esculenta HOM05D003238 ORTHO05D003571 4.1e-06 55.5 47 51.1
PGR031G1170 Punica granatum HOM05D004841 ORTHO05D005874 4.1e-06 55.5 33 78.8
CSS0019612 Camellia sinensis var. sinensis HOM05D004841 ORTHO05D005874 5.4e-06 55.1 37 70.3
CSS0027900 Camellia sinensis var. sinensis HOM05D004841 ORTHO05D005874 5.4e-06 55.1 37 70.3
Prupe.3G046400 Prunus persica HOM05D003238 ORTHO05D003571 5.4e-06 55.1 29 82.8
PGSC0003DMG400000275 Solanum tuberosum HOM05D003238 ORTHO05D003571 5.4e-06 55.1 46 58.7
Thecc.06G146500 Theobroma cacao HOM05D004841 ORTHO05D005874 5.4e-06 55.1 48 60.4
TWI34G1122 Tripterygium wilfordii HOM05D004841 ORTHO05D005874 5.4e-06 55.1 37 70.3
Cfa000914 Carpinus fangiana HOM05D004841 ORTHO05D005874 7.0e-06 54.7 38 73.7
ClCG01G024810 Citrullus lanatus HOM05D004841 ORTHO05D005874 7.0e-06 54.7 38 68.4
Rhsim13G0116700 Rhododendron simsii HOM05D004841 ORTHO05D005874 7.0e-06 54.7 36 72.2
Aa31LG2G2230 Aethionema arabicum HOM05D004841 ORTHO05D005874 9.2e-06 54.3 53 54.7
Sopen12g003880 Solanum pennellii HOM05D003238 ORTHO05D003571 9.2e-06 54.3 58 50.0


User provided reference genes

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