Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0006274g0020 Nicotiana tabacum HOM05D004870 ORTHO05D006061 2.9e-249 864.8 435 100.0
PGSC0003DMG401016396 Solanum tuberosum HOM05D004870 ORTHO05D006061 3.7e-220 768.1 462 86.4
Sopen01g003810 Solanum pennellii HOM05D004870 ORTHO05D006061 4.8e-220 767.7 461 86.8
Solyc01g008290.3 Solanum lycopersicum HOM05D004870 ORTHO05D006061 1.1e-219 766.5 461 86.6
CAN.G282.44 Capsicum annuum HOM05D004870 ORTHO05D006061 2.2e-217 758.8 461 86.1
Nitab4.5_0000069g0140 Nicotiana tabacum HOM05D004870 ORTHO05D006061 3.0e-214 748.4 467 83.9
Migut.N00083 Erythranthe guttata HOM05D004870 ORTHO05D006061 8.0e-199 697.2 463 78.4
CSS0023232 Camellia sinensis var. sinensis HOM05D004870 ORTHO05D006061 1.5e-197 693.0 465 77.2
SGA_v2.0_scaffold428G51528 Striga asiatica HOM05D004870 ORTHO05D006061 9.8e-197 690.3 478 75.7
Cc11_g00600 Coffea canephora HOM05D004870 ORTHO05D006061 9.1e-195 683.7 465 77.0
Actinidia04336 Actinidia chinensis HOM05D004870 ORTHO05D006061 5.9e-194 681.0 465 77.0
SGA_v2.0_scaffold91G28011 Striga asiatica HOM05D004870 ORTHO05D006061 1.3e-193 679.9 447 79.6
Sc06g0006850 Simmondsia chinensis HOM05D004870 ORTHO05D006061 3.8e-193 678.3 451 77.8
Lsat_1_v5_gn_1_81660 Lactuca sativa HOM05D004870 ORTHO05D006061 1.5e-192 676.4 454 75.8
Thecc.02G155600 Theobroma cacao HOM05D004870 ORTHO05D006061 7.2e-192 674.1 460 74.3
SalBow5G5328 Salvia bowleyana HOM05D004870 ORTHO05D006061 9.5e-192 673.7 449 77.7
TAR629G3247 Trochodendron aralioides HOM05D004870 ORTHO05D006061 9.5e-192 673.7 460 75.4
HanXRQChr01g0018971 Helianthus annuus HOM05D004870 ORTHO05D006061 2.8e-191 672.2 464 74.8
Duzib132G1043 Durio zibethinus HOM05D004870 ORTHO05D006061 3.6e-191 671.8 460 74.8
COL.COLO4_33098 Corchorus olitorius HOM05D004870 ORTHO05D006061 4.7e-191 671.4 460 74.3
ECA234G2132 Erigeron canadensis HOM05D004870 ORTHO05D006061 4.7e-191 671.4 455 75.8
CiPaw.05G171200 Carya illinoinensis HOM05D004870 ORTHO05D006061 6.1e-191 671.0 461 75.9
Dinv17644 Davidia involucrata HOM05D004870 ORTHO05D006061 1.4e-190 669.8 463 76.7
Dinv25387 Davidia involucrata HOM05D004870 ORTHO05D006061 1.8e-190 669.5 434 80.0
Gohir.D02G189300 Gossypium hirsutum HOM05D004870 ORTHO05D006061 6.8e-190 667.5 445 76.9
Gorai.005G212000 Gossypium raimondii HOM05D004870 ORTHO05D006061 6.8e-190 667.5 445 76.9
MBI03_g13828_MAGBIO Magnolia biondii HOM05D004870 ORTHO05D006061 6.8e-190 667.5 460 74.8
Gohir.A03G166000 Gossypium hirsutum HOM05D004870 ORTHO05D006061 8.9e-190 667.2 445 76.9
Prupe.4G061300 Prunus persica HOM05D004870 ORTHO05D006061 9.8e-189 663.7 461 74.6
DCAR_002602 Daucus carota HOM05D004870 ORTHO05D006061 2.2e-188 662.5 483 72.3
Lj3A847T44 Lonicera japonica HOM05D004870 ORTHO05D006061 2.2e-188 662.5 383 86.4
arahy.Tifrunner.gnm1.ann1.NQ58Z6 Arachis hypogaea HOM05D004870 ORTHO05D006061 2.8e-188 662.1 453 75.5
DCAR_026881 Daucus carota HOM05D004870 ORTHO05D006061 2.8e-188 662.1 460 75.0
Glyma.10G286200 Glycine max HOM05D004870 ORTHO05D006061 6.3e-188 661.0 452 75.9
arahy.Tifrunner.gnm1.ann1.GVRL8L Arachis hypogaea HOM05D004870 ORTHO05D006061 8.3e-188 660.6 453 75.3
RcHm_v2.0_Chr5g0010781 Rosa chinensis HOM05D004870 ORTHO05D006061 8.3e-188 660.6 463 73.7
QL03p045749 Quercus lobata HOM05D004870 ORTHO05D006061 1.1e-187 660.2 444 76.1
Potri.005G089700 Populus trichocarpa HOM05D004870 ORTHO05D006061 1.4e-187 659.8 462 73.4
TWI53G0925 Tripterygium wilfordii HOM05D004870 ORTHO05D006061 1.8e-187 659.4 460 74.1
MD05G1301200 Malus domestica HOM05D004870 ORTHO05D006061 2.4e-187 659.1 461 73.3
Ciclev10031476m.g Citrus clementina HOM05D004870 ORTHO05D006061 3.1e-187 658.7 456 75.7
THA.LOC104800685 Tarenaya hassleriana HOM05D004870 ORTHO05D006061 4.1e-187 658.3 451 75.4
Glyma.20G103100 Glycine max HOM05D004870 ORTHO05D006061 7.0e-187 657.5 452 75.2
MD10G1280100 Malus domestica HOM05D004870 ORTHO05D006061 7.0e-187 657.5 461 73.3
VMungo0720G1992 Vigna mungo HOM05D004870 ORTHO05D006061 7.0e-187 657.5 452 75.0
Manes.15G107800 Manihot esculenta HOM05D004870 ORTHO05D006061 2.7e-186 655.6 462 74.0
Medtr1g114530 Medicago truncatula HOM05D004870 ORTHO05D006061 4.5e-186 654.8 452 75.0
Phvul.007G014700 Phaseolus vulgaris HOM05D004870 ORTHO05D006061 4.5e-186 654.8 452 74.8
Haze_11781 Corylus avellana HOM05D004870 ORTHO05D006061 7.8e-186 654.1 470 73.6
Oeu063362.5 Olea europaea HOM05D004870 ORTHO05D006061 1.0e-185 653.7 480 71.9
FAN16G1105 Fragaria x ananassa HOM05D004870 ORTHO05D006061 2.3e-185 652.5 462 72.9
TPR.G4052 Trifolium pratense HOM05D004870 ORTHO05D006061 3.8e-185 651.7 424 78.8
TWI74G1525 Tripterygium wilfordii HOM05D004870 ORTHO05D006061 3.8e-185 651.7 461 73.5
FvH4_3g07800 Fragaria vesca HOM05D004870 ORTHO05D006061 5.0e-185 651.4 462 72.9
Sed0016006 Sechium edule HOM05D004870 ORTHO05D006061 6.6e-185 651.0 454 73.8
FAN25G2081 Fragaria x ananassa HOM05D004870 ORTHO05D006061 8.6e-185 650.6 462 72.9
Lj5g0006106 Lotus japonicus HOM05D004870 ORTHO05D006061 1.9e-184 649.4 452 73.9
PSO782G4799 Papaver somniferum HOM05D004870 ORTHO05D006061 1.9e-184 649.4 429 77.2
Lalb_Chr02g0143631 Lupinus albus HOM05D004870 ORTHO05D006061 3.3e-184 648.7 452 74.6
MELO3C005067.2 Cucumis melo HOM05D004870 ORTHO05D006061 4.3e-184 648.3 419 78.0
Eucgr.I02621 Eucalyptus grandis HOM05D004870 ORTHO05D006061 4.3e-184 648.3 460 73.0
FAN21G1781 Fragaria x ananassa HOM05D004870 ORTHO05D006061 4.3e-184 648.3 462 72.7
ClCG01G008090 Citrullus lanatus HOM05D004870 ORTHO05D006061 1.2e-183 646.7 436 76.4
FAN11G2678 Fragaria x ananassa HOM05D004870 ORTHO05D006061 1.2e-183 646.7 462 72.5
PSO063G7087 Papaver somniferum HOM05D004870 ORTHO05D006061 1.6e-183 646.4 429 76.9
Ah.08g211980 Amaranthus hybridus HOM05D004870 ORTHO05D006061 2.1e-183 646.0 384 83.6
Peaxi162Scf00021g02316 Petunia axillaris HOM05D004870 ORTHO05D006061 2.8e-183 645.6 459 75.2
CsaV3_5G020740 Cucumis sativus L. HOM05D004870 ORTHO05D006061 6.1e-183 644.4 436 76.4
AUR62030167 Chenopodium quinoa HOM05D004870 ORTHO05D006061 8.0e-183 644.0 385 83.6
GSVIVG01026142001 Vitis vinifera HOM05D004870 ORTHO05D006061 1.0e-182 643.7 462 74.0
Ca_11257_v3 Cicer arietinum L. HOM05D004870 ORTHO05D006061 1.4e-182 643.3 423 77.5
Aa31LG11G2760 Aethionema arabicum HOM05D004870 ORTHO05D006061 2.3e-182 642.5 457 73.5
Aqoxy5G04369 Aquilegia oxysepala HOM05D004870 ORTHO05D006061 4.0e-182 641.7 386 82.9
EL10Ac7g17331 Beta vulgaris HOM05D004870 ORTHO05D006061 4.0e-182 641.7 383 83.3
CsaV3_1G039280 Cucumis sativus L. HOM05D004870 ORTHO05D006061 6.8e-182 641.0 419 77.3
AUR62002708 Chenopodium quinoa HOM05D004870 ORTHO05D006061 1.5e-181 639.8 385 82.9
PGR142G2596 Punica granatum HOM05D004870 ORTHO05D006061 2.0e-181 639.4 418 77.5
Carub.0006s2107 Capsella rubella HOM05D004870 ORTHO05D006061 4.4e-181 638.3 450 73.6
CDE05G3274 Ceratophyllum demersum HOM05D004870 ORTHO05D006061 7.5e-181 637.5 459 70.6
Psat6g233800 Pisum sativum HOM05D004870 ORTHO05D006061 9.8e-181 637.1 423 77.1
AT5G23300 Arabidopsis thaliana HOM05D004870 ORTHO05D006061 2.9e-180 635.6 450 72.9
PSO339G5988 Papaver somniferum HOM05D004870 ORTHO05D006061 2.9e-180 635.6 429 76.0
Hund08594 Selenicereus undatus HOM05D004870 ORTHO05D006061 2.9e-180 635.6 496 69.8
HPP92_014771 Vanilla planifolia HOM05D004870 ORTHO05D006061 2.9e-180 635.6 419 76.6
ATR0618G304 Amborella trichopoda HOM05D004870 ORTHO05D006061 3.7e-180 635.2 419 74.7
AL6G34560 Arabidopsis lyrata HOM05D004870 ORTHO05D006061 3.7e-180 635.2 450 73.1
Sp2g23850 Schrenkiella parvula HOM05D004870 ORTHO05D006061 4.9e-180 634.8 450 73.1
CARHR190240 Cardamine hirsuta HOM05D004870 ORTHO05D006061 6.4e-180 634.4 452 72.6
C07p44260 Brassica napus HOM05D004870 ORTHO05D006061 8.3e-180 634.0 450 73.6
BolC7t44949H Brassica oleracea HOM05D004870 ORTHO05D006061 8.3e-180 634.0 450 73.6
BraA09t36349Z Brassica rapa HOM05D004870 ORTHO05D006061 1.1e-179 633.6 452 72.1
Thhalv10004171m.g Eutrema salsugineum HOM05D004870 ORTHO05D006061 2.4e-179 632.5 451 72.3
Cfa008769 Carpinus fangiana HOM05D004870 ORTHO05D006061 4.1e-179 631.7 443 74.7
A09p07010 Brassica napus HOM05D004870 ORTHO05D006061 9.2e-179 630.6 433 74.4
Rhsim09G0069200 Rhododendron simsii HOM05D004870 ORTHO05D006061 9.2e-179 630.6 412 78.9
A06p34260 Brassica napus HOM05D004870 ORTHO05D006061 2.7e-178 629.0 450 73.1
BraA06t26358Z Brassica rapa HOM05D004870 ORTHO05D006061 2.7e-178 629.0 450 73.1
C09p07820 Brassica napus HOM05D004870 ORTHO05D006061 7.8e-178 627.5 450 71.8
BolC9t53698H Brassica oleracea HOM05D004870 ORTHO05D006061 7.8e-178 627.5 450 71.8
Sabra05G0073800 Salix brachista HOM05D004870 ORTHO05D006061 4.3e-176 621.7 510 65.7
Os04g0676300 Oryza sativa ssp. japonica HOM05D004870 ORTHO05D006061 7.3e-176 620.9 421 73.9
Zm00001eb433680 Zea mays HOM05D004870 ORTHO05D006061 1.6e-175 619.8 458 70.1
Atru.chr11.1102 Acer truncatum HOM05D004870 ORTHO05D006061 6.2e-175 617.8 405 78.3
Atru.chr11.1106 Acer truncatum HOM05D004870 ORTHO05D006061 6.2e-175 617.8 405 78.3
HanXRQChr01g0018951 Helianthus annuus HOM05D004870 ORTHO05D006061 3.2e-171 605.5 461 67.7
Lsat_1_v5_gn_1_81640 Lactuca sativa HOM05D004870 ORTHO05D006061 2.1e-170 602.8 451 69.6
unitig_749.g13388 Utricularia gibba HOM05D004870 ORTHO05D006061 6.2e-167 591.3 385 77.4
ECA248G2791 Erigeron canadensis HOM05D004870 ORTHO05D006061 1.1e-166 590.5 448 67.4
BcaB04g19879 Brassica carinata HOM05D004870 ORTHO05D006061 8.9e-166 587.4 440 68.6
QL06p048547 Quercus lobata HOM05D004870 ORTHO05D006061 1.3e-161 573.5 536 60.3
Nn3g18601 Nelumbo nucifera HOM05D004870 ORTHO05D006061 5.1e-161 571.6 401 74.8
Mapoly0020s0155 Marchantia polymorpha HOM05D004870 ORTHO05D006061 4.7e-159 565.1 387 72.4
Pp3c9_12870 Physcomitrium patens HOM05D004870 ORTHO05D006061 1.8e-158 563.1 384 73.2
SMO351G0256 Selaginella moellendorffii HOM05D004870 ORTHO05D006061 5.2e-158 561.6 387 73.6
Prupe.6G003700 Prunus persica HOM05D004870 ORTHO05D006061 6.0e-154 548.1 461 65.3
BcaC04g23488 Brassica carinata HOM05D004870 ORTHO05D006061 1.0e-153 547.4 452 65.7
Pp3c15_6200 Physcomitrium patens HOM05D004870 ORTHO05D006061 3.9e-153 545.4 467 63.2
Duzib248G0882 Durio zibethinus HOM05D004870 ORTHO05D006061 5.3e-150 535.0 461 64.4
SHI28437 Sapria himalayana HOM05D004870 ORTHO05D006061 2.4e-147 526.2 358 75.1
vmacro15993 Vaccinium macrocarpon HOM05D004870 ORTHO05D006061 4.8e-135 485.3 589 51.8
CBR_g49488 Chara braunii HOM05D004870 ORTHO05D006061 1.3e-132 477.2 405 58.0
CDE05G3051 Ceratophyllum demersum HOM05D004870 ORTHO05D006061 4.2e-131 472.2 329 72.0
CBR_g53542 Chara braunii HOM05D004870 ORTHO05D006061 1.9e-120 436.8 387 57.4
Cre03.g199423 Chlamydomonas reinhardtii HOM05D004870 ORTHO05D006061 8.2e-119 431.4 359 60.4
MELO3C015352.2 Cucumis melo HOM05D004870 ORTHO05D006061 1.8e-118 430.3 293 75.8
PSO339G2837 Papaver somniferum HOM05D004870 ORTHO05D006061 3.0e-105 386.3 360 57.5
AagrBONN_evm.TU.Sc2ySwM_340.305 Anthoceros agrestis HOM05D004870 ORTHO05D006061 1.1e-104 384.4 257 74.3
MCO08G060 Micromonas commoda HOM05D004870 ORTHO05D006061 2.2e-100 370.2 468 46.6
AagrBONN_evm.TU.Sc2ySwM_228.5917 Anthoceros agrestis HOM05D004870 ORTHO05D006061 1.2e-88 331.3 422 47.2
Potri.007G074201 Populus trichocarpa HOM05D004870 ORTHO05D006061 5.2e-81 305.8 251 66.9
Thecc.02G156000 Theobroma cacao HOM05D004870 ORTHO05D006061 9.5e-75 285.0 172 83.1
Potri.007G074101 Populus trichocarpa HOM05D004870 ORTHO05D006061 8.0e-74 282.0 188 75.5
Haze_27018 Corylus avellana HOM05D004870 ORTHO05D006061 2.2e-71 273.9 377 41.9
PSO782G3529 Papaver somniferum HOM05D004870 ORTHO05D006061 8.6e-68 261.9 263 56.7
Ca_29057_v3 Cicer arietinum L. HOM05D004870 ORTHO05D006061 3.3e-59 233.4 352 40.6
SEGI_23530 Sequoiadendron giganteum HOM05D004870 ORTHO05D006061 1.6e-45 188.0 161 60.2
SEGI_39125 Sequoiadendron giganteum HOM05D004870 ORTHO05D006061 1.5e-43 181.4 117 76.9
Cfa021670 Carpinus fangiana HOM05D004870 ORTHO05D006061 2.8e-42 177.2 422 33.9
C08p27210 Brassica napus HOM05D004870 ORTHO05D006061 9.3e-30 135.6 75 82.7
RcHm_v2.0_Chr5g0064321 Rosa chinensis HOM05D004870 ORTHO05D006061 2.5e-27 127.5 81 81.5
vmacro15994 Vaccinium macrocarpon HOM05D004870 ORTHO05D006061 4.3e-27 126.7 72 81.9
Thecc.02G156100 Theobroma cacao HOM05D004870 ORTHO05D006061 4.0e-25 120.2 69 81.2
RcHm_v2.0_Chr5g0050031 Rosa chinensis HOM05D004870 ORTHO05D006061 6.7e-20 102.8 66 81.8
C04p22220 Brassica napus HOM05D004870 ORTHO05D006061 2.5e-19 100.9 100 57.0
BcaC02g11010 Brassica carinata HOM05D004870 ORTHO05D006061 4.3e-19 100.1 76 65.8
Pp3s46_240 Physcomitrium patens HOM05D003658 ORTHO05D004457 8.4e-15 85.9 293 27.0
PGR142G1834 Punica granatum HOM05D004870 ORTHO05D006061 3.2e-14 84.0 59 72.9
RcHm_v2.0_Chr5g0050041 Rosa chinensis HOM05D004870 ORTHO05D347201 2.5e-11 74.3 46 73.9
arahy.Tifrunner.gnm1.ann1.7S4D4S Arachis hypogaea HOM05D004870 ORTHO05D000194 1.5e-08 65.1 52 65.4
C02p39510 Brassica napus HOM05D000461 ORTHO05D016800 1.3e-07 62.0 45 64.4
BolC2t09964H Brassica oleracea HOM05D000461 ORTHO05D016800 1.3e-07 62.0 45 64.4


User provided reference genes

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