Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0006190g0040 Nicotiana tabacum HOM05D001728 ORTHO05D004321 5.1e-96 354.4 173 100.0
Nitab4.5_0009717g0020 Nicotiana tabacum HOM05D001728 ORTHO05D004321 9.0e-77 290.4 192 78.1
Nitab4.5_0006966g0050 Nicotiana tabacum HOM05D001728 ORTHO05D004321 2.1e-62 242.7 183 72.1
Sopen06g022550 Solanum pennellii HOM05D001728 ORTHO05D004321 1.8e-61 239.6 223 62.8
Nitab4.5_0006338g0070 Nicotiana tabacum HOM05D001728 ORTHO05D004321 1.2e-60 236.9 201 66.2
Solyc06g063100.3 Solanum lycopersicum HOM05D001728 ORTHO05D004321 2.0e-60 236.1 223 61.9
PGSC0003DMG401004867 Solanum tuberosum HOM05D001728 ORTHO05D004321 4.5e-60 235.0 223 61.9
CAN.G1682.23 Capsicum annuum HOM05D001728 ORTHO05D004321 4.2e-58 228.4 223 60.1
Peaxi162Scf00207g01547 Petunia axillaris HOM05D001728 ORTHO05D004321 6.9e-53 211.1 211 58.8
CAN.G790.54 Capsicum annuum HOM05D001728 ORTHO05D004321 1.2e-52 210.3 231 55.4
Solyc03g123660.3 Solanum lycopersicum HOM05D001728 ORTHO05D004321 3.4e-52 208.8 231 55.4
Sopen03g041430 Solanum pennellii HOM05D001728 ORTHO05D004321 3.4e-52 208.8 231 55.4
Peaxi162Scf00038g02337 Petunia axillaris HOM05D001728 ORTHO05D004321 1.3e-51 206.8 231 55.0
Rhsim12G0213200 Rhododendron simsii HOM05D000276 ORTHO05D003951 2.5e-50 202.6 142 70.4
Rhsim08G0245100 Rhododendron simsii HOM05D001728 ORTHO05D004321 1.1e-47 193.7 231 51.9
CSS0025062 Camellia sinensis var. sinensis HOM05D001728 ORTHO05D004321 2.5e-47 192.6 230 51.7
Actinidia31146 Actinidia chinensis HOM05D001728 ORTHO05D004321 5.7e-47 191.4 228 51.8
Lj5A28G49 Lonicera japonica HOM05D001728 ORTHO05D004321 9.7e-47 190.7 233 51.5
vmacro18718 Vaccinium macrocarpon HOM05D001728 ORTHO05D004321 1.1e-45 187.2 227 52.9
vmacro18772 Vaccinium macrocarpon HOM05D001728 ORTHO05D004321 1.1e-45 187.2 227 52.9
Hma1.2p1_0090F.1_g045760 Hydrangea macrophylla HOM05D001728 ORTHO05D004321 4.5e-44 181.8 232 50.0
Hma1.2p1_2628F.1_g325685 Hydrangea macrophylla HOM05D001728 ORTHO05D004321 4.5e-44 181.8 232 50.0
Cc04_g00660 Coffea canephora HOM05D001728 ORTHO05D004321 7.7e-44 181.0 231 51.9
Dinv20378 Davidia involucrata HOM05D001728 ORTHO05D004321 2.2e-43 179.5 228 50.0
MBI19_g32874_MAGBIO Magnolia biondii HOM05D001728 ORTHO05D004321 2.2e-43 179.5 193 51.8
Cfa003458 Carpinus fangiana HOM05D001728 ORTHO05D004321 8.5e-43 177.6 231 45.9
DCAR_007661 Daucus carota HOM05D001728 ORTHO05D004321 3.2e-42 175.6 200 53.5
Prupe.3G030700 Prunus persica HOM05D001728 ORTHO05D004321 5.1e-40 168.3 230 46.1
FAN09G1109 Fragaria x ananassa HOM05D001728 ORTHO05D004321 6.7e-40 167.9 203 52.7
FAN14G5216 Fragaria x ananassa HOM05D001728 ORTHO05D004321 6.7e-40 167.9 203 52.7
PGSC0003DMG400009150 Solanum tuberosum HOM05D001728 ORTHO05D004321 6.7e-40 167.9 116 75.9
HanXRQChr09g0277281 Helianthus annuus HOM05D001728 ORTHO05D004321 4.3e-39 165.2 227 48.0
Ciclev10026383m.g Citrus clementina HOM05D001728 ORTHO05D004321 7.4e-39 164.5 229 45.4
Sed0008897 Sechium edule HOM05D001728 ORTHO05D004321 7.4e-39 164.5 204 48.0
GSVIVG01016663001 Vitis vinifera HOM05D001728 ORTHO05D004321 1.3e-38 163.7 231 47.2
MD17G1154600 Malus domestica HOM05D001728 ORTHO05D004321 2.2e-38 162.9 230 46.1
RcHm_v2.0_Chr2g0148081 Rosa chinensis HOM05D001728 ORTHO05D004321 2.2e-38 162.9 233 46.4
CsaV3_3G031050 Cucumis sativus L. HOM05D001728 ORTHO05D004321 2.8e-38 162.5 229 44.5
CiPaw.01G211100 Carya illinoinensis HOM05D001728 ORTHO05D004321 4.8e-38 161.8 229 45.9
CiPaw.02G130700 Carya illinoinensis HOM05D001728 ORTHO05D004321 4.8e-38 161.8 227 47.1
ClCG07G014270 Citrullus lanatus HOM05D001728 ORTHO05D004321 4.8e-38 161.8 229 44.1
ECA232G0029 Erigeron canadensis HOM05D001728 ORTHO05D004321 8.2e-38 161.0 230 47.8
Oeu015470.1 Olea europaea HOM05D001728 ORTHO05D004321 8.2e-38 161.0 229 45.0
QL05p000874 Quercus lobata HOM05D001728 ORTHO05D004321 1.1e-37 160.6 231 44.6
QL05p001120 Quercus lobata HOM05D001728 ORTHO05D004321 1.1e-37 160.6 231 44.6
MELO3C022707.2 Cucumis melo HOM05D001728 ORTHO05D004321 1.4e-37 160.2 229 44.1
Thecc.06G130700 Theobroma cacao HOM05D001728 ORTHO05D004321 1.4e-37 160.2 232 44.8
Eucgr.J02593 Eucalyptus grandis HOM05D001728 ORTHO05D004321 1.8e-37 159.8 229 43.7
TAR624G0656 Trochodendron aralioides HOM05D001728 ORTHO05D004321 2.4e-37 159.5 234 44.9
FvH4_6g35920 Fragaria vesca HOM05D001728 ORTHO05D004321 3.1e-37 159.1 233 46.4
Psat4g164960 Pisum sativum HOM05D001728 ORTHO05D004321 3.1e-37 159.1 232 43.1
Gohir.A06G142800 Gossypium hirsutum HOM05D001728 ORTHO05D004321 4.1e-37 158.7 231 44.6
FAN05G3900 Fragaria x ananassa HOM05D001728 ORTHO05D004321 5.3e-37 158.3 233 46.4
Manes.11G012300 Manihot esculenta HOM05D001728 ORTHO05D004321 6.9e-37 157.9 230 44.8
SGA_v2.0_scaffold122G33304 Striga asiatica HOM05D001728 ORTHO05D004321 1.2e-36 157.1 231 45.5
THA.LOC104812276 Tarenaya hassleriana HOM05D001728 ORTHO05D004321 1.2e-36 157.1 229 44.1
TAR626G1627 Trochodendron aralioides HOM05D001728 ORTHO05D004321 1.5e-36 156.8 233 45.1
Phvul.010G122800 Phaseolus vulgaris HOM05D001728 ORTHO05D004321 2.0e-36 156.4 231 44.2
VMungo0331G1763 Vigna mungo HOM05D001728 ORTHO05D004321 2.0e-36 156.4 231 43.7
Migut.I01136 Erythranthe guttata HOM05D001728 ORTHO05D004321 2.6e-36 156.0 231 46.3
Glyma.07G046200 Glycine max HOM05D001728 ORTHO05D004321 2.6e-36 156.0 231 43.3
Lalb_Chr17g0343191 Lupinus albus HOM05D001728 ORTHO05D004321 2.6e-36 156.0 231 42.4
Manes.04G151300 Manihot esculenta HOM05D001728 ORTHO05D004321 2.6e-36 156.0 227 44.5
Ca_23449_v3 Cicer arietinum L. HOM05D001728 ORTHO05D004321 3.4e-36 155.6 229 43.7
FAN02G4585 Fragaria x ananassa HOM05D001728 ORTHO05D004321 3.4e-36 155.6 233 45.5
Lalb_Chr04g0261251 Lupinus albus HOM05D001728 ORTHO05D004321 3.4e-36 155.6 230 43.9
Sed0018882 Sechium edule HOM05D001728 ORTHO05D004321 3.4e-36 155.6 229 43.2
Glyma.16G014400 Glycine max HOM05D001728 ORTHO05D004321 4.5e-36 155.2 232 44.4
Gorai.010G173000 Gossypium raimondii HOM05D001728 ORTHO05D004321 4.5e-36 155.2 231 43.7
Lalb_Chr04g0253961 Lupinus albus HOM05D001728 ORTHO05D004321 7.7e-36 154.5 231 43.3
Gohir.D06G148500 Gossypium hirsutum HOM05D001728 ORTHO05D004321 1.0e-35 154.1 231 43.3
Sp1g15410 Schrenkiella parvula HOM05D001728 ORTHO05D004321 1.7e-35 153.3 231 42.9
MD09G1172300 Malus domestica HOM05D001728 ORTHO05D004321 2.2e-35 152.9 232 44.4
Gohir.D10G051032 Gossypium hirsutum HOM05D001728 ORTHO05D004321 3.8e-35 152.1 224 43.3
Gorai.011G054900 Gossypium raimondii HOM05D001728 ORTHO05D004321 3.8e-35 152.1 224 43.3
Gohir.A10G048037 Gossypium hirsutum HOM05D001728 ORTHO05D004321 5.0e-35 151.8 224 43.8
THA.LOC104813967 Tarenaya hassleriana HOM05D001728 ORTHO05D004321 5.0e-35 151.8 226 43.8
arahy.Tifrunner.gnm1.ann1.158S68 Arachis hypogaea HOM05D001728 ORTHO05D004321 1.4e-34 150.2 233 42.9
COL.COLO4_30874 Corchorus olitorius HOM05D001728 ORTHO05D004321 1.4e-34 150.2 231 43.7
AL1G29530 Arabidopsis lyrata HOM05D001728 ORTHO05D004321 1.9e-34 149.8 234 42.3
vmacro22013 Vaccinium macrocarpon HOM05D001728 ORTHO05D004321 1.9e-34 149.8 172 50.6
Duzib235G0145 Durio zibethinus HOM05D001728 ORTHO05D004321 2.5e-34 149.4 231 43.7
BcaC07g41410 Brassica carinata HOM05D001728 ORTHO05D004321 3.2e-34 149.1 231 41.6
Cpa.g.sc25.198 Carica papaya HOM05D001728 ORTHO05D004321 5.5e-34 148.3 232 42.2
Medtr8g023380 Medicago truncatula HOM05D001728 ORTHO05D004321 7.2e-34 147.9 233 40.8
BcaC05g25652 Brassica carinata HOM05D001728 ORTHO05D004321 9.4e-34 147.5 231 41.1
A06p13230 Brassica napus HOM05D001728 ORTHO05D004321 9.4e-34 147.5 231 41.1
AT1G17280 Arabidopsis thaliana HOM05D001728 ORTHO05D004321 1.2e-33 147.1 231 41.1
Lsat_1_v5_gn_4_90580 Lactuca sativa HOM05D001728 ORTHO05D004321 1.2e-33 147.1 230 43.5
Aa31LG7G2090 Aethionema arabicum HOM05D001728 ORTHO05D004321 1.6e-33 146.7 228 41.7
C05p15670 Brassica napus HOM05D001728 ORTHO05D004321 1.6e-33 146.7 231 41.1
BolC8t51946H Brassica oleracea HOM05D001728 ORTHO05D004321 1.6e-33 146.7 231 41.6
Lj3g0026896 Lotus japonicus HOM05D001728 ORTHO05D004321 1.6e-33 146.7 230 41.7
TWI14G1006 Tripterygium wilfordii HOM05D001728 ORTHO05D004321 1.6e-33 146.7 231 42.0
BcaC07g38844 Brassica carinata HOM05D001728 ORTHO05D004321 2.1e-33 146.4 227 41.9
A08p30990 Brassica napus HOM05D001728 ORTHO05D004321 2.7e-33 146.0 231 40.3
Carub.0001s1704 Capsella rubella HOM05D001728 ORTHO05D004321 2.7e-33 146.0 234 42.3
A09p60490 Brassica napus HOM05D001728 ORTHO05D004321 3.6e-33 145.6 229 41.0
BraA06t24476Z Brassica rapa HOM05D001728 ORTHO05D004321 4.7e-33 145.2 240 40.0
BcaC07g41430 Brassica carinata HOM05D001728 ORTHO05D004321 6.1e-33 144.8 230 40.4
Oeu006754.1 Olea europaea HOM05D001728 ORTHO05D004321 7.9e-33 144.4 173 49.1
BolC5t30274H Brassica oleracea HOM05D001728 ORTHO05D004321 1.0e-32 144.1 240 39.6
CARHR017870 Cardamine hirsuta HOM05D001728 ORTHO05D004321 1.0e-32 144.1 232 41.4
BcaB03g13008 Brassica carinata HOM05D001728 ORTHO05D004321 1.4e-32 143.7 229 41.0
Hund05701 Selenicereus undatus HOM05D001728 ORTHO05D004321 1.4e-32 143.7 240 41.2
C08p43970 Brassica napus HOM05D001728 ORTHO05D004321 1.8e-32 143.3 237 40.5
PSO724G0814 Papaver somniferum HOM05D001728 ORTHO05D004321 2.3e-32 142.9 239 41.0
Potri.001G162200 Populus trichocarpa HOM05D001728 ORTHO05D004321 2.3e-32 142.9 227 40.1
BraA08t35028Z Brassica rapa HOM05D001728 ORTHO05D004321 3.0e-32 142.5 240 38.8
Duzib160G0016 Durio zibethinus HOM05D001728 ORTHO05D004321 3.0e-32 142.5 231 41.6
C08p17810 Brassica napus HOM05D001728 ORTHO05D004321 3.9e-32 142.1 228 40.4
BraA09t41420Z Brassica rapa HOM05D001728 ORTHO05D004321 3.9e-32 142.1 238 39.5
Hma1.2p1_1999F.1_g310540 Hydrangea macrophylla HOM05D001728 ORTHO05D004321 3.9e-32 142.1 116 65.5
CANSAT56G0906 Cannabis sativa HOM05D001728 ORTHO05D004321 5.1e-32 141.7 230 41.7
TPR.G29473 Trifolium pratense HOM05D001728 ORTHO05D004321 5.1e-32 141.7 230 41.7
Thhalv10009625m.g Eutrema salsugineum HOM05D001728 ORTHO05D004321 6.7e-32 141.4 238 39.9
Oeu053418.1 Olea europaea HOM05D001728 ORTHO05D004321 8.8e-32 141.0 228 43.0
PGR102G2367 Punica granatum HOM05D001728 ORTHO05D004321 8.8e-32 141.0 237 40.5
BcaB07g34036 Brassica carinata HOM05D001728 ORTHO05D004321 1.5e-31 140.2 230 39.6
TWI23G0186 Tripterygium wilfordii HOM05D001728 ORTHO05D004321 1.5e-31 140.2 232 41.4
Aqoxy7G00928 Aquilegia oxysepala HOM05D001728 ORTHO05D004321 2.0e-31 139.8 234 41.0
AL8G24660 Arabidopsis lyrata HOM05D001728 ORTHO05D004321 2.0e-31 139.8 236 40.3
MSTRG.10907 Avicennia marina HOM05D001728 ORTHO05D004321 2.0e-31 139.8 230 44.3
CARHR257870 Cardamine hirsuta HOM05D001728 ORTHO05D004321 2.0e-31 139.8 235 42.6
FAN14G1964 Fragaria x ananassa HOM05D001728 ORTHO05D004321 3.3e-31 139.0 280 38.2
BolC8t49407H Brassica oleracea HOM05D001728 ORTHO05D004321 4.4e-31 138.7 237 38.8
Actinidia24421 Actinidia chinensis HOM05D001728 ORTHO05D004321 1.3e-30 137.1 186 47.3
AT5G50430 Arabidopsis thaliana HOM05D001728 ORTHO05D004321 1.7e-30 136.7 235 40.0
Thhalv10014520m.g Eutrema salsugineum HOM05D001728 ORTHO05D004321 2.8e-30 136.0 237 40.5
EL10Ac7g16497 Beta vulgaris HOM05D001728 ORTHO05D004321 3.7e-30 135.6 247 40.9
Ah.15g094900 Amaranthus hybridus HOM05D001728 ORTHO05D004321 6.3e-30 134.8 230 43.0
ATR0099G071 Amborella trichopoda HOM05D001728 ORTHO05D004321 6.3e-30 134.8 231 41.1
SEGI_06866 Sequoiadendron giganteum HOM05D001728 ORTHO05D004321 6.3e-30 134.8 229 39.7
Haze_16140 Corylus avellana HOM05D001728 ORTHO05D004321 1.4e-29 133.7 231 40.7
SalBow6G2824 Salvia bowleyana HOM05D001728 ORTHO05D004321 2.4e-29 132.9 189 46.6
Sc15g0004040 Simmondsia chinensis HOM05D001728 ORTHO05D004321 7.0e-29 131.3 206 45.1
Carub.0008s1054 Capsella rubella HOM05D001728 ORTHO05D004321 5.9e-28 128.3 232 38.4
Zm00001eb374150 Zea mays HOM05D001728 ORTHO05D004321 8.5e-27 124.4 233 37.8
arahy.Tifrunner.gnm1.ann1.FK8434 Arachis hypogaea HOM05D001728 ORTHO05D004321 3.2e-26 122.5 192 41.1
AUR62001400 Chenopodium quinoa HOM05D001728 ORTHO05D004321 4.2e-26 122.1 231 39.4
Lj9A539T85 Lonicera japonica HOM05D001728 ORTHO05D004321 4.2e-26 122.1 119 59.7
Sabra01G0130400 Salix brachista HOM05D001728 ORTHO05D004321 5.5e-26 121.7 290 33.8
Hund18634 Selenicereus undatus HOM05D001728 ORTHO05D004321 1.4e-24 117.1 223 37.7
Actinidia21840 Actinidia chinensis HOM05D005942 ORTHO05D007209 1.8e-24 116.7 110 57.3
Pp3c22_19100 Physcomitrium patens HOM05D001728 ORTHO05D004321 1.8e-24 116.7 232 37.1
Zm00001eb278450 Zea mays HOM05D001728 ORTHO05D004321 4.0e-24 115.5 236 35.6
AUR62043500 Chenopodium quinoa HOM05D001728 ORTHO05D004321 8.8e-24 114.4 194 41.2
unitig_26.g8911 Utricularia gibba HOM05D001728 ORTHO05D004321 2.0e-23 113.2 163 46.0
Mapoly0008s0153 Marchantia polymorpha HOM05D001728 ORTHO05D004321 2.6e-23 112.8 187 40.6
SMO347G0576 Selaginella moellendorffii HOM05D001728 ORTHO05D004321 4.4e-23 112.1 220 35.5
HPP92_009327 Vanilla planifolia HOM05D001728 ORTHO05D004321 4.4e-23 112.1 240 36.7
AUR62025612 Chenopodium quinoa HOM05D001728 ORTHO05D004321 7.5e-23 111.3 174 42.0
Os06g0193000 Oryza sativa ssp. japonica HOM05D001728 ORTHO05D004321 7.5e-23 111.3 237 34.2
PSO135G0334 Papaver somniferum HOM05D001728 ORTHO05D004321 1.4e-21 107.1 124 50.0
AUR62043999 Chenopodium quinoa HOM05D001728 ORTHO05D004321 1.2e-20 104.0 163 44.2
Aqoxy549s001 Aquilegia oxysepala HOM05D001728 ORTHO05D004321 2.6e-20 102.8 120 48.3
CDE07G0536 Ceratophyllum demersum HOM05D001728 ORTHO05D004321 1.5e-18 97.1 230 32.6
CBR_g29935 Chara braunii HOM05D001728 ORTHO05D004321 4.2e-18 95.5 172 39.5
Ah.08g217390 Amaranthus hybridus HOM05D001728 ORTHO05D004321 2.1e-17 93.2 276 31.2
AagrBONN_evm.TU.Sc2ySwM_228.340 Anthoceros agrestis HOM05D001728 ORTHO05D004321 5.2e-16 88.6 111 41.4
Nn6g35743 Nelumbo nucifera HOM05D001728 ORTHO05D004321 5.2e-16 88.6 143 44.1
Atru.chr1.4160 Acer truncatum HOM05D001728 ORTHO05D004321 1.2e-15 87.4 98 50.0
Zm00001eb329650 Zea mays HOM05D001728 ORTHO05D004321 4.4e-15 85.5 121 41.3
Zm00001eb028890 Zea mays HOM05D001728 ORTHO05D004321 9.8e-15 84.3 118 43.2
Zm00001eb171360 Zea mays HOM05D001728 ORTHO05D004321 9.8e-15 84.3 118 43.2
Zm00001eb210040 Zea mays HOM05D001728 ORTHO05D004321 9.8e-15 84.3 118 43.2
Zm00001eb241260 Zea mays HOM05D001728 ORTHO05D004321 9.8e-15 84.3 118 43.2
Zm00001eb315560 Zea mays HOM05D001728 ORTHO05D004321 9.8e-15 84.3 118 43.2
Zm00001eb399730 Zea mays HOM05D001728 ORTHO05D004321 9.8e-15 84.3 118 43.2
Potri.003G073100 Populus trichocarpa HOM05D001728 ORTHO05D004321 6.3e-14 81.6 60 68.3
SMO236G0070 Selaginella moellendorffii HOM05D001728 ORTHO05D004321 2.4e-13 79.7 105 41.9
Cre08.g372400 Chlamydomonas reinhardtii HOM05D001728 ORTHO05D004321 2.7e-12 76.3 159 36.5
TPR.G11433 Trifolium pratense HOM05D001728 ORTHO05D004321 1.3e-11 73.9 49 69.4
Zm00001eb367340 Zea mays HOM05D001728 ORTHO05D004321 4.2e-10 68.9 74 52.7
vmacro18717 Vaccinium macrocarpon HOM05D002316 ORTHO05D002280 6.1e-09 65.1 59 61.0
CAN.G635.25 Capsicum annuum HOM05D005942 ORTHO05D007209 6.8e-08 61.6 126 35.7
Gohir.D05G314400 Gossypium hirsutum HOM05D001728 ORTHO05D004321 5.7e-07 58.5 132 34.1
Duzib192G0575 Durio zibethinus HOM05D001728 ORTHO05D004321 7.5e-07 58.2 92 41.3
Gohir.D07G051800 Gossypium hirsutum HOM05D001728 ORTHO05D004321 7.5e-07 58.2 92 41.3
TAR624G1420 Trochodendron aralioides HOM05D002437 ORTHO05D001735 6.3e-06 55.1 32 81.2
SGA_v2.0_scaffold88G27316 Striga asiatica HOM05D001728 ORTHO05D004321 8.3e-06 54.7 141 32.6
TAR633G1418 Trochodendron aralioides HOM05D002437 ORTHO05D002831 8.3e-06 54.7 31 80.6


User provided reference genes

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