Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0005853g0060 Nicotiana tabacum HOM05D068302 ORTHO05D013824 2.9e-137 491.9 247 100.0
Nitab4.5_0001152g0690 Nicotiana tabacum HOM05D000435 ORTHO05D013824 3.2e-51 206.1 119 89.1
Nitab4.5_0000172g2200 Nicotiana tabacum HOM05D000435 ORTHO05D013824 1.6e-50 203.8 119 87.4
CAN.G85.21 Capsicum annuum HOM05D000435 ORTHO05D016180 2.3e-49 199.9 112 92.0
Peaxi162Scf00139g01031 Petunia axillaris HOM05D000435 ORTHO05D000430 6.6e-49 198.4 115 86.1
Nitab4.5_0000085g0100 Nicotiana tabacum HOM05D000435 ORTHO05D013824 1.9e-48 196.8 108 91.7
CAN.G1109.6 Capsicum annuum HOM05D000435 ORTHO05D016180 1.2e-47 194.1 121 83.5
Solyc07g065770.3 Solanum lycopersicum HOM05D000435 ORTHO05D013824 1.2e-45 187.6 114 84.2
Sopen07g033980 Solanum pennellii HOM05D003572 ORTHO05D004118 1.2e-45 187.6 114 84.2
CAN.G623.32 Capsicum annuum HOM05D000435 ORTHO05D000430 4.4e-45 185.7 112 84.8
Nitab4.5_0000152g0410 Nicotiana tabacum HOM05D000435 ORTHO05D000430 4.4e-45 185.7 116 83.6
CAN.G1.3 Capsicum annuum HOM05D000435 ORTHO05D016180 2.5e-40 169.9 108 84.3
Nitab4.5_0008300g0010 Nicotiana tabacum HOM05D000435 ORTHO05D013824 7.3e-40 168.3 106 83.0
Dinv10357 Davidia involucrata HOM05D000435 ORTHO05D000430 1.6e-39 167.2 115 76.5
Nitab4.5_0010643g0020 Nicotiana tabacum HOM05D000435 ORTHO05D000430 2.8e-39 166.4 116 78.4
PGSC0003DMG400022268 Solanum tuberosum HOM05D003572 ORTHO05D004118 1.4e-38 164.1 96 86.5
QL08p003237 Quercus lobata HOM05D000435 ORTHO05D000430 2.4e-38 163.3 115 74.8
DCAR_017069 Daucus carota HOM05D000435 ORTHO05D000430 5.3e-38 162.2 114 72.8
CSS0004404 Camellia sinensis var. sinensis HOM05D000435 ORTHO05D000430 8.4e-36 154.8 117 72.6
CSS0032781 Camellia sinensis var. sinensis HOM05D000435 ORTHO05D000430 8.4e-36 154.8 117 72.6
Manes.03G143200 Manihot esculenta HOM05D000435 ORTHO05D000430 8.4e-36 154.8 115 72.2
Cpa.g.sc12.135 Carica papaya HOM05D000435 ORTHO05D000430 1.4e-35 154.1 116 74.1
Nitab4.5_0001152g0130 Nicotiana tabacum HOM05D000435 ORTHO05D013824 1.2e-34 151.0 119 70.6
TWI39G0143 Tripterygium wilfordii HOM05D000435 ORTHO05D000430 3.5e-34 149.4 115 71.3
Potri.001G370600 Populus trichocarpa HOM05D000435 ORTHO05D000430 7.9e-34 148.3 116 69.0
CiPaw.11G206300 Carya illinoinensis HOM05D000435 ORTHO05D000430 1.0e-33 147.9 115 71.3
Sabra16G0243600 Salix brachista HOM05D000435 ORTHO05D000430 1.3e-33 147.5 115 67.8
Duzib170G0379 Durio zibethinus HOM05D000435 ORTHO05D000430 2.3e-33 146.7 120 65.0
Atru.chr2.3749 Acer truncatum HOM05D000435 ORTHO05D000430 5.1e-33 145.6 114 69.3
Atru.chr2.3763 Acer truncatum HOM05D000435 ORTHO05D000430 5.1e-33 145.6 114 69.3
DCAR_013252 Daucus carota HOM05D000435 ORTHO05D000430 5.1e-33 145.6 115 67.8
Gohir.A08G025300 Gossypium hirsutum HOM05D000435 ORTHO05D000430 6.6e-33 145.2 115 69.6
Gohir.D08G035800 Gossypium hirsutum HOM05D000435 ORTHO05D000430 6.6e-33 145.2 115 69.6
Gorai.004G033800 Gossypium raimondii HOM05D000435 ORTHO05D000430 6.6e-33 145.2 115 69.6
Cfa016927 Carpinus fangiana HOM05D000435 ORTHO05D000430 8.7e-33 144.8 115 70.4
Lalb_Chr10g0107501 Lupinus albus HOM05D000435 ORTHO05D000430 1.1e-32 144.4 114 66.7
Thecc.07G008500 Theobroma cacao HOM05D000435 ORTHO05D000430 1.1e-32 144.4 113 69.9
TAR627G0575 Trochodendron aralioides HOM05D003572 ORTHO05D004118 1.1e-32 144.4 113 69.0
Prupe.6G027000 Prunus persica HOM05D000435 ORTHO05D000430 1.5e-32 144.1 114 68.4
Potri.011G094650 Populus trichocarpa HOM05D000435 ORTHO05D000430 4.3e-32 142.5 116 69.0
AUR62017136 Chenopodium quinoa HOM05D000435 ORTHO05D000430 7.3e-32 141.7 114 67.5
Sc03g0011590 Simmondsia chinensis HOM05D000435 ORTHO05D000430 7.3e-32 141.7 115 65.2
Glyma.14G012000 Glycine max HOM05D000435 ORTHO05D000430 9.6e-32 141.4 115 63.5
Lj1A893T55 Lonicera japonica HOM05D000435 ORTHO05D000430 1.3e-31 141.0 115 67.0
LjContig00081g0009877 Lotus japonicus HOM05D000435 ORTHO05D000430 1.3e-31 141.0 115 63.5
Nitab4.5_0000085g0110 Nicotiana tabacum HOM05D000435 ORTHO05D013824 1.3e-31 141.0 81 87.7
Migut.M01629 Erythranthe guttata HOM05D000435 ORTHO05D000430 1.6e-31 140.6 116 69.8
Psat0s4150g0240 Pisum sativum HOM05D000435 ORTHO05D000430 1.6e-31 140.6 118 63.6
Ca_06413_v3 Cicer arietinum L. HOM05D000435 ORTHO05D000430 2.1e-31 140.2 116 62.9
MD11G1036200 Malus domestica HOM05D000435 ORTHO05D000430 2.1e-31 140.2 114 68.4
GSVIVG01014733001 Vitis vinifera HOM05D000435 ORTHO05D000430 2.1e-31 140.2 115 65.2
RcHm_v2.0_Chr5g0075901 Rosa chinensis HOM05D000435 ORTHO05D000430 3.6e-31 139.4 115 67.8
Haze_09858 Corylus avellana HOM05D000435 ORTHO05D000430 4.8e-31 139.0 115 67.8
Nitab4.5_0001152g0100 Nicotiana tabacum HOM05D000435 ORTHO05D016180 1.1e-30 137.9 117 65.8
Phvul.008G280800 Phaseolus vulgaris HOM05D000435 ORTHO05D000430 1.1e-30 137.9 115 60.9
Glyma.02G302200 Glycine max HOM05D000435 ORTHO05D000430 1.4e-30 137.5 117 60.7
Ciclev10010223m.g Citrus clementina HOM05D000435 ORTHO05D000430 2.4e-30 136.7 117 66.7
COL.COLO4_07733 Corchorus olitorius HOM05D003572 ORTHO05D004118 2.4e-30 136.7 119 66.4
AUR62035671 Chenopodium quinoa HOM05D000435 ORTHO05D000430 4.0e-30 136.0 114 64.9
VMungo0647G0856 Vigna mungo HOM05D000435 ORTHO05D000430 4.0e-30 136.0 115 60.9
Actinidia03625 Actinidia chinensis HOM05D000435 ORTHO05D000430 5.3e-30 135.6 110 66.4
Oeu005470.2 Olea europaea HOM05D000435 ORTHO05D000430 5.3e-30 135.6 101 73.3
SGA_v2.0_scaffold171G38846 Striga asiatica HOM05D000435 ORTHO05D000430 6.9e-30 135.2 114 65.8
EL10Ac4g07534 Beta vulgaris HOM05D000435 ORTHO05D000430 1.5e-29 134.0 122 60.7
arahy.Tifrunner.gnm1.ann1.64V7P3 Arachis hypogaea HOM05D000435 ORTHO05D000430 2.0e-29 133.7 120 59.2
FAN25G2805 Fragaria x ananassa HOM05D000435 ORTHO05D000430 7.6e-29 131.7 119 63.0
THA.LOC104815690 Tarenaya hassleriana HOM05D000435 ORTHO05D000430 2.9e-28 129.8 108 66.7
arahy.Tifrunner.gnm1.ann1.D8MFXN Arachis hypogaea HOM05D000435 ORTHO05D000430 4.9e-28 129.0 122 57.4
Ca_12447_v3 Cicer arietinum L. HOM05D000435 ORTHO05D000430 8.4e-28 128.3 116 63.8
TPR.G1291 Trifolium pratense HOM05D000435 ORTHO05D000430 8.4e-28 128.3 118 57.6
CAN.G131.13 Capsicum annuum HOM05D044362 ORTHO05D016180 1.1e-27 127.9 108 69.4
ECA236G1471 Erigeron canadensis HOM05D000435 ORTHO05D000430 1.4e-27 127.5 113 61.9
FvH4_3g42410 Fragaria vesca HOM05D000435 ORTHO05D000430 1.4e-27 127.5 109 64.2
FAN11G3608 Fragaria x ananassa HOM05D000435 ORTHO05D000430 1.4e-27 127.5 109 64.2
FAN28G0967 Fragaria x ananassa HOM05D000435 ORTHO05D000430 1.4e-27 127.5 109 64.2
Medtr5g096390 Medicago truncatula HOM05D000435 ORTHO05D000430 1.9e-27 127.1 118 60.2
Eucgr.F03676 Eucalyptus grandis HOM05D000435 ORTHO05D000430 3.2e-27 126.3 115 56.5
FAN16G3565 Fragaria x ananassa HOM05D000435 ORTHO05D000430 3.2e-27 126.3 109 63.3
Lsat_1_v5_gn_7_114141 Lactuca sativa HOM05D000435 ORTHO05D000430 9.3e-27 124.8 115 62.6
CANSAT11G0821 Cannabis sativa HOM05D000435 ORTHO05D000430 1.2e-26 124.4 119 61.3
PSO541G1261 Papaver somniferum HOM05D000435 ORTHO05D000430 2.1e-26 123.6 122 58.2
CAN.G78.6 Capsicum annuum HOM05D000435 ORTHO05D013824 3.5e-26 122.9 68 91.2
PSO675G1718 Papaver somniferum HOM05D000435 ORTHO05D000430 3.5e-26 122.9 122 57.4
HanXRQChr11g0334421 Helianthus annuus HOM05D000435 ORTHO05D000430 1.0e-25 121.3 115 59.1
CAN.G1.23 Capsicum annuum HOM05D000435 ORTHO05D016180 1.3e-25 120.9 117 60.7
CAN.G72.11 Capsicum annuum HOM05D000435 ORTHO05D013824 1.3e-25 120.9 68 89.7
Lalb_Chr20g0114061 Lupinus albus HOM05D000435 ORTHO05D000430 2.3e-25 120.2 115 57.4
Sed0013125 Sechium edule HOM05D000435 ORTHO05D000430 8.7e-25 118.2 116 56.9
Rhsim04G0010800 Rhododendron simsii HOM05D000435 ORTHO05D000430 1.5e-24 117.5 116 62.1
Nn2g15498 Nelumbo nucifera HOM05D000435 ORTHO05D000430 7.4e-24 115.2 113 53.1
Aqoxy3G03979 Aquilegia oxysepala HOM05D000435 ORTHO05D000430 3.7e-23 112.8 115 53.9
Nitab4.5_0008535g0030 Nicotiana tabacum HOM05D000435 ORTHO05D013824 4.8e-23 112.5 64 89.1
CAN.G1485.3 Capsicum annuum HOM05D000435 ORTHO05D013824 3.1e-22 109.8 68 82.4
Sp3g11390 Schrenkiella parvula HOM05D000435 ORTHO05D000430 4.0e-22 109.4 118 57.6
Phvul.006G059212 Phaseolus vulgaris HOM05D000435 ORTHO05D000430 5.3e-22 109.0 115 53.9
CARHR087810 Cardamine hirsuta HOM05D000435 ORTHO05D000430 6.9e-22 108.6 97 63.9
Thhalv10020198m.g Eutrema salsugineum HOM05D000435 ORTHO05D000430 6.9e-22 108.6 97 63.9
VMungo0540G1677 Vigna mungo HOM05D003572 ORTHO05D004118 6.9e-22 108.6 115 53.0
AL3G24980 Arabidopsis lyrata HOM05D000435 ORTHO05D000430 1.2e-21 107.8 97 64.9
Carub.0003s1257 Capsella rubella HOM05D000435 ORTHO05D000430 1.5e-21 107.5 97 63.9
Nitab4.5_0000172g0070 Nicotiana tabacum HOM05D000435 ORTHO05D016180 2.6e-21 106.7 119 55.5
Aa31LG8G420 Aethionema arabicum HOM05D000435 ORTHO05D000430 5.8e-21 105.5 112 54.5
ClCG10G004470 Citrullus lanatus HOM05D000435 ORTHO05D000430 7.6e-21 105.1 118 50.8
Glyma.18G074800 Glycine max HOM05D000435 ORTHO05D000430 7.6e-21 105.1 115 51.3
AT3G13220 Arabidopsis thaliana HOM05D000435 ORTHO05D000430 1.0e-20 104.8 97 62.9
MBI15_g38526_MAGBIO Magnolia biondii HOM05D000435 ORTHO05D000430 2.2e-20 103.6 115 53.9
Lj6g0002997 Lotus japonicus HOM05D000435 ORTHO05D000430 2.9e-20 103.2 115 53.0
vmacro09627 Vaccinium macrocarpon HOM05D000435 ORTHO05D000430 2.9e-20 103.2 153 47.1
CsaV3_3G004300 Cucumis sativus L. HOM05D000435 ORTHO05D000430 6.5e-20 102.1 120 50.8
Nitab4.5_0000330g0090 Nicotiana tabacum HOM05D000435 ORTHO05D285482 6.5e-20 102.1 76 73.7
Cc05_g15220 Coffea canephora HOM05D000435 ORTHO05D000430 8.4e-20 101.7 116 56.9
HanXRQChr04g0114551 Helianthus annuus HOM05D000435 ORTHO05D000430 8.4e-20 101.7 114 56.1
A01p40340 Brassica napus HOM05D000435 ORTHO05D000430 2.5e-19 100.1 116 54.3
BraA01t04069Z Brassica rapa HOM05D000435 ORTHO05D000430 2.5e-19 100.1 116 54.3
C01p51870 Brassica napus HOM05D000435 ORTHO05D000430 3.2e-19 99.8 118 54.2
BolC1t05135H Brassica oleracea HOM05D000435 ORTHO05D000430 3.2e-19 99.8 118 54.2
Nitab4.5_0000172g0050 Nicotiana tabacum HOM05D068302 ORTHO05D285468 2.1e-18 97.1 126 50.8
BcaB04g21003 Brassica carinata HOM05D000435 ORTHO05D000430 6.0e-18 95.5 95 58.9
Nitab4.5_0001788g0220 Nicotiana tabacum HOM05D000435 ORTHO05D013824 6.0e-18 95.5 51 92.2
arahy.Tifrunner.gnm1.ann1.1C3JIX Arachis hypogaea HOM05D000435 ORTHO05D000430 1.0e-17 94.7 128 46.1
MELO3C014121.2 Cucumis melo HOM05D000435 ORTHO05D000430 3.0e-17 93.2 122 47.5
FAN21G0356 Fragaria x ananassa HOM05D000435 ORTHO05D000430 3.3e-16 89.7 109 50.5
arahy.Tifrunner.gnm1.ann1.2NP6SE Arachis hypogaea HOM05D000435 ORTHO05D000430 2.1e-15 87.0 119 46.2
CDE02G3494 Ceratophyllum demersum HOM05D000435 ORTHO05D000430 1.4e-14 84.3 116 49.1
ATR0751G105 Amborella trichopoda HOM05D000435 ORTHO05D000430 3.4e-13 79.7 114 44.7
Sp1g41420 Schrenkiella parvula HOM05D000435 ORTHO05D371061 1.7e-12 77.4 133 42.1
Nitab4.5_0002312g0050 Nicotiana tabacum HOM05D000435 ORTHO05D013824 1.1e-11 74.7 48 75.0
CAN.G390.26 Capsicum annuum HOM05D000435 ORTHO05D016180 1.9e-11 73.9 40 90.0
PGR031G0181 Punica granatum HOM05D000435 ORTHO05D000430 1.6e-10 70.9 73 54.8
SalBow8G3343 Salvia bowleyana HOM05D000435 ORTHO05D000430 3.5e-10 69.7 69 56.5
SalBow8G4079 Salvia bowleyana HOM05D000435 ORTHO05D000430 3.5e-10 69.7 69 56.5
Ca_14744_v3 Cicer arietinum L. HOM05D007194 ORTHO05D009182 4.6e-10 69.3 70 51.4
Ca_07440_v3 Cicer arietinum L. HOM05D007194 ORTHO05D009182 7.9e-10 68.6 65 50.8
TPR.G1281 Trifolium pratense HOM05D000435 ORTHO05D013824 1.9e-08 63.9 46 67.4
Ca_07436_v3 Cicer arietinum L. HOM05D004537 ORTHO05D005492 3.7e-07 59.7 92 41.3
Nitab4.5_0002072g0130 Nicotiana tabacum HOM05D000435 ORTHO05D013824 8.2e-07 58.5 37 78.4


User provided reference genes

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