Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0005738g0030 Nicotiana tabacum HOM05D002224 ORTHO05D030959 8.4e-63 243.4 116 100.0
Nitab4.5_0001418g0030 Nicotiana tabacum HOM05D000243 ORTHO05D018895 3.6e-37 158.3 100 78.0
PGSC0003DMG401017193 Solanum tuberosum HOM05D000243 ORTHO05D018895 2.4e-33 145.6 108 70.4
PGSC0003DMG402017193 Solanum tuberosum HOM05D000243 ORTHO05D018895 2.4e-33 145.6 108 70.4
Sopen09g032470 Solanum pennellii HOM05D000243 ORTHO05D018895 2.9e-31 138.7 106 66.0
Solyc09g089550.4 Solanum lycopersicum HOM05D000243 ORTHO05D018895 1.1e-30 136.7 106 66.0
Nitab4.5_0008399g0010 Nicotiana tabacum HOM05D002224 ORTHO05D002446 2.7e-29 132.1 116 61.2
Nitab4.5_0005738g0010 Nicotiana tabacum HOM05D002224 ORTHO05D002446 6.7e-28 127.5 116 59.5
Peaxi162Scf00024g00053 Petunia axillaris HOM05D002224 ORTHO05D002446 1.7e-26 122.9 115 56.5
CAN.G1007.9 Capsicum annuum HOM05D002224 ORTHO05D002446 1.6e-24 116.3 115 56.5
PGSC0003DMG400017192 Solanum tuberosum HOM05D002224 ORTHO05D002446 2.9e-23 112.1 121 53.7
Sopen09g032480 Solanum pennellii HOM05D002224 ORTHO05D002446 1.9e-22 109.4 115 55.7
Nitab4.5_0000436g0070 Nicotiana tabacum HOM05D002224 ORTHO05D002446 5.5e-22 107.8 108 53.7
Nitab4.5_0003331g0070 Nicotiana tabacum HOM05D002224 ORTHO05D002446 2.1e-21 105.9 108 51.9
Peaxi162Scf00019g00284 Petunia axillaris HOM05D002224 ORTHO05D002446 5.2e-20 101.3 109 49.5
Cc03_g04990 Coffea canephora HOM05D002224 ORTHO05D002446 4.4e-19 98.2 116 47.4
Sopen03g001460 Solanum pennellii HOM05D002224 ORTHO05D002446 1.3e-18 96.7 107 50.5
Dinv29900 Davidia involucrata HOM05D002224 ORTHO05D002446 4.8e-18 94.7 116 41.4
Solyc03g005430.4 Solanum lycopersicum HOM05D002224 ORTHO05D002446 6.3e-18 94.4 107 49.5
Sopen06g018860 Solanum pennellii HOM05D002224 ORTHO05D002446 6.3e-18 94.4 115 47.8
PGSC0003DMG401016322 Solanum tuberosum HOM05D002224 ORTHO05D002446 8.3e-18 94.0 115 47.8
CAN.G638.71 Capsicum annuum HOM05D002224 ORTHO05D002446 1.4e-17 93.2 109 48.6
Solyc06g053750.3 Solanum lycopersicum HOM05D002224 ORTHO05D002446 2.4e-17 92.4 115 47.0
CAN.G1007.6 Capsicum annuum HOM05D002224 ORTHO05D030959 5.3e-17 91.3 72 63.9
Oeu036133.2 Olea europaea HOM05D002224 ORTHO05D002446 3.5e-16 88.6 120 44.2
MSTRG.21894 Avicennia marina HOM05D002224 ORTHO05D002446 1.7e-15 86.3 113 40.7
Actinidia04472 Actinidia chinensis HOM05D002224 ORTHO05D030959 1.5e-14 83.2 98 42.9
CSS0035478 Camellia sinensis var. sinensis HOM05D002224 ORTHO05D002446 1.5e-14 83.2 126 37.3
TPR.G28750 Trifolium pratense HOM05D002224 ORTHO05D002446 2.5e-14 82.4 118 41.5
Psat6g107120 Pisum sativum HOM05D002224 ORTHO05D002446 3.2e-14 82.0 116 37.9
Thecc.04G247700 Theobroma cacao HOM05D002224 ORTHO05D002446 5.5e-14 81.3 125 40.8
Duzib212G0982 Durio zibethinus HOM05D002224 ORTHO05D002446 1.6e-13 79.7 116 40.5
MSTRG.24697 Avicennia marina HOM05D002224 ORTHO05D002446 4.7e-13 78.2 116 37.1
Ciclev10004192m.g Citrus clementina HOM05D002224 ORTHO05D002446 6.1e-13 77.8 119 38.7
Duzib052G0795 Durio zibethinus HOM05D002224 ORTHO05D002446 8.0e-13 77.4 116 38.8
Psat6g132600 Pisum sativum HOM05D002224 ORTHO05D002446 1.0e-12 77.0 116 37.9
Atru.chr4.2182 Acer truncatum HOM05D002224 ORTHO05D002446 1.8e-12 76.3 124 37.9
Ca_11941_v3 Cicer arietinum L. HOM05D002224 ORTHO05D002446 1.8e-12 76.3 117 38.5
Glyma.10G188600 Glycine max HOM05D002224 ORTHO05D002446 3.0e-12 75.5 116 36.2
QL06p015924 Quercus lobata HOM05D002224 ORTHO05D002446 4.0e-12 75.1 116 37.9
Actinidia05459 Actinidia chinensis HOM05D002224 ORTHO05D002446 5.2e-12 74.7 116 37.9
Glyma.20G202100 Glycine max HOM05D002224 ORTHO05D002446 5.2e-12 74.7 116 37.1
SalBow3G3388 Salvia bowleyana HOM05D002224 ORTHO05D002446 5.2e-12 74.7 128 35.2
arahy.Tifrunner.gnm1.ann1.1XI841 Arachis hypogaea HOM05D002224 ORTHO05D002446 8.8e-12 73.9 116 37.9
Gohir.A02G036400 Gossypium hirsutum HOM05D002224 ORTHO05D002446 8.8e-12 73.9 116 37.1
AUR62015466 Chenopodium quinoa HOM05D002224 ORTHO05D002446 1.2e-11 73.6 117 40.2
Cpa.g.sc44.110 Carica papaya HOM05D002224 ORTHO05D002446 1.5e-11 73.2 120 36.7
DCAR_030728 Daucus carota HOM05D002224 ORTHO05D002446 1.5e-11 73.2 133 37.6
Gohir.A09G223700 Gossypium hirsutum HOM05D002224 ORTHO05D002446 3.4e-11 72.0 116 39.7
Gohir.D02G043000 Gossypium hirsutum HOM05D002224 ORTHO05D002446 3.4e-11 72.0 116 37.9
Gorai.005G047400 Gossypium raimondii HOM05D002224 ORTHO05D002446 3.4e-11 72.0 116 37.9
RcHm_v2.0_Chr4g0391041 Rosa chinensis HOM05D002224 ORTHO05D002446 3.4e-11 72.0 116 37.9
TPR.G26447 Trifolium pratense HOM05D002224 ORTHO05D002446 4.4e-11 71.6 112 36.6
FAN17G0240 Fragaria x ananassa HOM05D002224 ORTHO05D002446 5.7e-11 71.2 117 37.6
Lj5g0007272 Lotus japonicus HOM05D002224 ORTHO05D002446 5.7e-11 71.2 114 36.8
Potri.008G163300 Populus trichocarpa HOM05D002224 ORTHO05D002446 5.7e-11 71.2 116 37.9
Lalb_Chr02g0150611 Lupinus albus HOM05D002224 ORTHO05D002446 7.5e-11 70.9 111 37.8
AUR62002254 Chenopodium quinoa HOM05D002224 ORTHO05D002446 9.8e-11 70.5 117 38.5
COL.COLO4_15805 Corchorus olitorius HOM05D002224 ORTHO05D002446 9.8e-11 70.5 116 39.7
Lalb_Chr21g0312421 Lupinus albus HOM05D002224 ORTHO05D002446 1.3e-10 70.1 115 38.3
Medtr1g073790 Medicago truncatula HOM05D002224 ORTHO05D002446 1.3e-10 70.1 111 34.2
arahy.Tifrunner.gnm1.ann1.E2XQ4Y Arachis hypogaea HOM05D002224 ORTHO05D002446 2.2e-10 69.3 117 37.6
Gorai.006G247200 Gossypium raimondii HOM05D002224 ORTHO05D002446 2.2e-10 69.3 116 38.8
Lalb_Chr03g0037041 Lupinus albus HOM05D002224 ORTHO05D002446 2.2e-10 69.3 108 39.8
Glyma.20G086700 Glycine max HOM05D002224 ORTHO05D002446 2.8e-10 68.9 121 33.9
Phvul.007G129700 Phaseolus vulgaris HOM05D002224 ORTHO05D002446 2.8e-10 68.9 115 33.0
Potri.010G075000 Populus trichocarpa HOM05D002224 ORTHO05D002446 2.8e-10 68.9 119 37.0
CiPaw.01G189300 Carya illinoinensis HOM05D002224 ORTHO05D002446 3.7e-10 68.6 124 34.7
FvH4_4g02970 Fragaria vesca HOM05D002224 ORTHO05D002446 3.7e-10 68.6 117 36.8
FAN12G1014 Fragaria x ananassa HOM05D002224 ORTHO05D002446 3.7e-10 68.6 117 36.8
MD16G1211000 Malus domestica HOM05D002224 ORTHO05D002446 3.7e-10 68.6 116 39.7
Phvul.007G271500 Phaseolus vulgaris HOM05D002224 ORTHO05D002446 3.7e-10 68.6 116 33.6
TWI53G1239 Tripterygium wilfordii HOM05D002224 ORTHO05D002446 3.7e-10 68.6 120 40.8
TWI53G1395 Tripterygium wilfordii HOM05D002224 ORTHO05D002446 3.7e-10 68.6 120 40.8
VMungo0720G0464 Vigna mungo HOM05D002224 ORTHO05D002446 3.7e-10 68.6 111 33.3
VMungo0720G3056 Vigna mungo HOM05D002224 ORTHO05D002446 3.7e-10 68.6 116 33.6
DCAR_027286 Daucus carota HOM05D002224 ORTHO05D002446 4.8e-10 68.2 117 33.3
Prupe.1G033200 Prunus persica HOM05D002224 ORTHO05D002446 6.3e-10 67.8 117 39.3
Medtr1g044450 Medicago truncatula HOM05D002224 ORTHO05D002446 8.3e-10 67.4 133 31.6
Sabra08G0124600 Salix brachista HOM05D002224 ORTHO05D002446 8.3e-10 67.4 116 37.1
Gohir.D09G225700 Gossypium hirsutum HOM05D002224 ORTHO05D002446 1.1e-09 67.0 116 37.9
MD13G1209100 Malus domestica HOM05D002224 ORTHO05D002446 1.1e-09 67.0 116 38.8
SalBow2G1285 Salvia bowleyana HOM05D002224 ORTHO05D002446 1.1e-09 67.0 115 35.7
Sabra10G0033800 Salix brachista HOM05D002224 ORTHO05D002446 1.8e-09 66.2 119 37.8
TWI09G1092 Tripterygium wilfordii HOM05D002224 ORTHO05D002446 1.8e-09 66.2 102 42.2
arahy.Tifrunner.gnm1.ann1.P060ZG Arachis hypogaea HOM05D002224 ORTHO05D002446 3.1e-09 65.5 116 35.3
Lalb_Chr19g0128431 Lupinus albus HOM05D002224 ORTHO05D002446 3.1e-09 65.5 122 32.8
arahy.Tifrunner.gnm1.ann1.V2K6XN Arachis hypogaea HOM05D002224 ORTHO05D002446 4.1e-09 65.1 116 33.6
Ca_11949_v3 Cicer arietinum L. HOM05D002224 ORTHO05D002446 5.4e-09 64.7 107 38.3
Oeu002596.1 Olea europaea HOM05D002224 ORTHO05D002446 5.4e-09 64.7 95 40.0
FAN22G0018 Fragaria x ananassa HOM05D002224 ORTHO05D002446 7.0e-09 64.3 116 37.1
Rhsim04G0189200 Rhododendron simsii HOM05D002224 ORTHO05D002446 9.1e-09 63.9 123 35.8
TWI73G0813 Tripterygium wilfordii HOM05D002224 ORTHO05D002446 9.1e-09 63.9 107 39.3
CAN.G1867.2 Capsicum annuum HOM05D002224 ORTHO05D002446 2.0e-08 62.8 86 44.2
Oeu058878.1 Olea europaea HOM05D002224 ORTHO05D002446 2.0e-08 62.8 110 40.9
Haze_11315 Corylus avellana HOM05D002224 ORTHO05D002446 3.5e-08 62.0 108 34.3
Glyma.10G008700 Glycine max HOM05D002224 ORTHO05D002446 3.5e-08 62.0 118 33.1
vmacro08439 Vaccinium macrocarpon HOM05D002224 ORTHO05D002446 3.5e-08 62.0 123 33.3
CiPaw.02G115800 Carya illinoinensis HOM05D002224 ORTHO05D002446 4.5e-08 61.6 124 33.1
Lj6g0016969 Lotus japonicus HOM05D002224 ORTHO05D002446 1.0e-07 60.5 112 35.7
vmacro15416 Vaccinium macrocarpon HOM05D002224 ORTHO05D002446 1.0e-07 60.5 116 31.9
GSVIVG01018133001 Vitis vinifera HOM05D002224 ORTHO05D002446 1.3e-07 60.1 114 36.8
DCAR_002341 Daucus carota HOM05D002224 ORTHO05D002446 3.8e-07 58.5 136 31.6
Hund11858 Selenicereus undatus HOM05D002224 ORTHO05D002446 6.6e-07 57.8 114 32.5
Rhsim02G0034400 Rhododendron simsii HOM05D002224 ORTHO05D002446 8.6e-07 57.4 116 31.9
Eucgr.H03150 Eucalyptus grandis HOM05D002224 ORTHO05D002446 1.1e-06 57.0 116 31.0
Gohir.A10G113500 Gossypium hirsutum HOM05D002224 ORTHO05D002446 1.1e-06 57.0 105 33.3
Ah.07g207460 Amaranthus hybridus HOM05D002224 ORTHO05D002446 1.5e-06 56.6 107 37.4
EL10Ac3g05897 Beta vulgaris HOM05D002224 ORTHO05D002446 1.5e-06 56.6 111 35.1
CANSAT78G0691 Cannabis sativa HOM05D002224 ORTHO05D002446 1.9e-06 56.2 126 32.5
Gohir.D10G153900 Gossypium hirsutum HOM05D002224 ORTHO05D002446 2.5e-06 55.8 105 32.4
Gorai.011G171900 Gossypium raimondii HOM05D002224 ORTHO05D002446 2.5e-06 55.8 105 32.4
MELO3C006460.2 Cucumis melo HOM05D002224 ORTHO05D002446 3.3e-06 55.5 106 38.7
Hund04557 Selenicereus undatus HOM05D002224 ORTHO05D002446 3.3e-06 55.5 97 38.1
CsaV3_3G012500 Cucumis sativus L. HOM05D002224 ORTHO05D002446 7.2e-06 54.3 106 36.8
Nn1g02667 Nelumbo nucifera HOM05D002224 ORTHO05D002446 7.2e-06 54.3 107 33.6


User provided reference genes

Program Settings