Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0005729g0070 Nicotiana tabacum HOM05D005810 ORTHO05D007279 8.2e-177 623.6 317 100.0
Nitab4.5_0005059g0010 Nicotiana tabacum HOM05D005810 ORTHO05D007279 5.2e-123 444.9 267 88.8
CAN.G134.120 Capsicum annuum HOM05D005810 ORTHO05D007279 4.3e-109 398.7 244 86.5
Peaxi162Scf00282g00136 Petunia axillaris HOM05D005810 ORTHO05D007279 6.2e-92 341.7 244 77.0
CSS0013071 Camellia sinensis var. sinensis HOM05D005810 ORTHO05D007279 1.3e-68 264.2 270 57.0
Dinv13660 Davidia involucrata HOM05D005810 ORTHO05D007279 8.2e-68 261.5 266 55.3
CSS0027419 Camellia sinensis var. sinensis HOM05D005810 ORTHO05D007279 1.4e-67 260.8 267 55.8
QL03p024871 Quercus lobata HOM05D005810 ORTHO05D007279 2.9e-65 253.1 262 54.6
Migut.B01074 Erythranthe guttata HOM05D005810 ORTHO05D007279 5.0e-65 252.3 266 54.1
Haze_04340 Corylus avellana HOM05D005810 ORTHO05D007279 1.9e-64 250.4 246 54.9
Cfa006452 Carpinus fangiana HOM05D005810 ORTHO05D007279 7.2e-64 248.4 267 51.7
Potri.005G051400 Populus trichocarpa HOM05D005810 ORTHO05D007279 1.3e-62 244.2 273 52.7
GSVIVG01021833001 Vitis vinifera HOM05D005810 ORTHO05D007279 3.0e-62 243.0 264 54.5
CANSAT54G2140 Cannabis sativa HOM05D005810 ORTHO05D007279 1.5e-61 240.7 273 51.6
Lj7C488G4 Lonicera japonica HOM05D005810 ORTHO05D007279 5.7e-61 238.8 246 55.3
COL.COLO4_15299 Corchorus olitorius HOM05D005810 ORTHO05D007279 1.3e-60 237.7 267 52.1
Duzib177G1000 Durio zibethinus HOM05D005810 ORTHO05D007279 2.2e-60 236.9 265 52.5
MD04G1221700 Malus domestica HOM05D005810 ORTHO05D007279 1.1e-59 234.6 269 51.3
Prupe.6G340900 Prunus persica HOM05D005810 ORTHO05D007279 1.1e-59 234.6 267 52.8
SalBow8G0563 Salvia bowleyana HOM05D005810 ORTHO05D007279 6.9e-59 231.9 246 53.7
Thecc.05G287300 Theobroma cacao HOM05D005810 ORTHO05D007279 1.5e-58 230.7 265 52.5
RcHm_v2.0_Chr3g0451831 Rosa chinensis HOM05D005810 ORTHO05D007279 2.0e-58 230.3 269 51.3
TAR365G0727 Trochodendron aralioides HOM05D005810 ORTHO05D007279 3.4e-58 229.6 248 53.2
FvH4_6g03330 Fragaria vesca HOM05D005810 ORTHO05D007279 5.9e-58 228.8 268 50.7
DCAR_006618 Daucus carota HOM05D005810 ORTHO05D007279 1.0e-57 228.0 267 50.6
Cpa.g.sc117.72 Carica papaya HOM05D005810 ORTHO05D007279 6.5e-57 225.3 265 50.2
Lalb_Chr18g0045021 Lupinus albus HOM05D005810 ORTHO05D007279 6.5e-57 225.3 264 52.3
arahy.Tifrunner.gnm1.ann1.BBX725 Arachis hypogaea HOM05D005810 ORTHO05D007279 1.1e-56 224.6 268 50.0
Ciclev10003382m.g Citrus clementina HOM05D005810 ORTHO05D007279 2.5e-56 223.4 247 50.6
arahy.Tifrunner.gnm1.ann1.E80190 Arachis hypogaea HOM05D005810 ORTHO05D007279 3.2e-56 223.0 268 49.6
EL10Ac4g09107 Beta vulgaris HOM05D005810 ORTHO05D007279 7.2e-56 221.9 244 48.8
PSO210G1835 Papaver somniferum HOM05D005810 ORTHO05D007279 9.4e-56 221.5 265 50.6
PSO832G3650 Papaver somniferum HOM05D005810 ORTHO05D007279 1.2e-55 221.1 271 50.6
AUR62001034 Chenopodium quinoa HOM05D005810 ORTHO05D007279 2.1e-55 220.3 244 50.4
Ca_09411_v3 Cicer arietinum L. HOM05D005810 ORTHO05D007279 1.0e-54 218.0 285 45.6
PGR031G1118 Punica granatum HOM05D005810 ORTHO05D007279 1.0e-54 218.0 263 47.1
Gohir.A11G254200 Gossypium hirsutum HOM05D005810 ORTHO05D007279 1.8e-54 217.2 265 49.4
Lj1g0027742 Lotus japonicus HOM05D005810 ORTHO05D007279 1.5e-53 214.2 284 48.2
THA.LOC104821678 Tarenaya hassleriana HOM05D005810 ORTHO05D007279 2.0e-53 213.8 268 48.1
Eucgr.B01694 Eucalyptus grandis HOM05D005810 ORTHO05D007279 3.3e-53 213.0 265 46.0
Glyma.19G243400 Glycine max HOM05D005810 ORTHO05D007279 4.4e-53 212.6 266 49.6
Carub.0003s0400 Capsella rubella HOM05D005810 ORTHO05D007279 5.7e-53 212.2 267 47.2
MELO3C024669.2 Cucumis melo HOM05D005810 ORTHO05D007279 5.7e-53 212.2 267 46.8
Sed0015078 Sechium edule HOM05D005810 ORTHO05D007279 5.7e-53 212.2 269 48.3
Aqoxy5G00419 Aquilegia oxysepala HOM05D005810 ORTHO05D007279 9.7e-53 211.5 267 47.9
Aa31LG5G15210 Aethionema arabicum HOM05D005810 ORTHO05D007279 2.8e-52 209.9 264 49.6
Gorai.007G284000 Gossypium raimondii HOM05D005810 ORTHO05D007279 8.2e-52 208.4 265 47.9
Glyma.03G245900 Glycine max HOM05D005810 ORTHO05D007279 1.1e-51 208.0 266 48.5
AUR62004921 Chenopodium quinoa HOM05D005810 ORTHO05D007279 1.4e-51 207.6 258 47.7
AT3G04820 Arabidopsis thaliana HOM05D005810 ORTHO05D007279 1.8e-51 207.2 264 47.3
TPR.G6991 Trifolium pratense HOM05D005810 ORTHO05D007279 2.4e-51 206.8 285 47.0
VMungo0222G0001 Vigna mungo HOM05D005810 ORTHO05D007279 2.4e-51 206.8 265 46.8
CARHR079070 Cardamine hirsuta HOM05D005810 ORTHO05D007279 3.1e-51 206.5 268 46.6
Gohir.D11G264000 Gossypium hirsutum HOM05D005810 ORTHO05D007279 3.1e-51 206.5 265 47.5
Medtr7g114850 Medicago truncatula HOM05D005810 ORTHO05D007279 4.1e-51 206.1 285 46.3
ECA232G3974 Erigeron canadensis HOM05D005810 ORTHO05D007279 6.9e-51 205.3 263 47.1
Eucgr.B02108 Eucalyptus grandis HOM05D005810 ORTHO05D007279 6.9e-51 205.3 271 45.4
Rhsim05G0160900 Rhododendron simsii HOM05D005810 ORTHO05D007279 1.2e-50 204.5 298 43.6
AL3G14980 Arabidopsis lyrata HOM05D005810 ORTHO05D007279 1.5e-50 204.1 264 46.6
Ah.06g192190 Amaranthus hybridus HOM05D005810 ORTHO05D007279 2.0e-50 203.8 260 45.8
vmacro14215 Vaccinium macrocarpon HOM05D005810 ORTHO05D007279 2.0e-50 203.8 328 40.5
ATR0665G477 Amborella trichopoda HOM05D005810 ORTHO05D007279 4.5e-50 202.6 266 48.1
MD12G1237800 Malus domestica HOM05D005810 ORTHO05D007279 5.9e-50 202.2 181 58.6
Phvul.006G100200 Phaseolus vulgaris HOM05D005810 ORTHO05D007279 5.9e-50 202.2 267 48.7
BcaB04g19298 Brassica carinata HOM05D005810 ORTHO05D007279 7.7e-50 201.8 262 45.8
ClCG06G009190 Citrullus lanatus HOM05D005810 ORTHO05D007279 1.7e-49 200.7 265 46.8
Psat3g008040 Pisum sativum HOM05D005810 ORTHO05D007279 2.2e-49 200.3 287 45.6
Cc02_g31840 Coffea canephora HOM05D005810 ORTHO05D007279 1.9e-48 197.2 203 54.7
Sp3g03650 Schrenkiella parvula HOM05D005810 ORTHO05D007279 2.5e-48 196.8 263 45.2
HPP92_028013 Vanilla planifolia HOM05D005810 ORTHO05D007279 4.2e-48 196.1 264 43.6
BcaC01g04347 Brassica carinata HOM05D005810 ORTHO05D007279 7.2e-48 195.3 262 45.8
BolC3t16404H Brassica oleracea HOM05D005810 ORTHO05D007279 9.4e-48 194.9 262 45.8
BraA03t12559Z Brassica rapa HOM05D005810 ORTHO05D007279 1.2e-47 194.5 262 45.0
Oeu060673.3 Olea europaea HOM05D005810 ORTHO05D007279 1.6e-47 194.1 374 37.7
Sopen01g041220 Solanum pennellii HOM05D005810 ORTHO05D007279 1.6e-47 194.1 143 77.6
HanXRQChr12g0379621 Helianthus annuus HOM05D005810 ORTHO05D007279 6.1e-47 192.2 263 45.6
Thhalv10022286m.g Eutrema salsugineum HOM05D005810 ORTHO05D007279 1.4e-46 191.0 246 46.7
C03p41160 Brassica napus HOM05D005810 ORTHO05D007279 1.8e-46 190.7 245 46.5
A03p33850 Brassica napus HOM05D005810 ORTHO05D007279 3.0e-46 189.9 245 45.7
Atru.chr2.785 Acer truncatum HOM05D005810 ORTHO05D007279 9.7e-45 184.9 139 64.0
CDE05G3473 Ceratophyllum demersum HOM05D005810 ORTHO05D007279 1.4e-43 181.0 266 44.7
unitig_37.g12634 Utricularia gibba HOM05D005810 ORTHO05D007279 4.2e-40 169.5 205 47.8
Hund06958 Selenicereus undatus HOM05D005810 ORTHO05D007279 4.0e-38 162.9 265 41.1
MBI11_g10322_MAGBIO Magnolia biondii HOM05D005810 ORTHO05D007279 2.8e-36 156.8 261 41.8
Zm00001eb328420 Zea mays HOM05D005810 ORTHO05D007279 4.8e-36 156.0 249 40.6
Pp3c18_8560 Physcomitrium patens HOM05D005810 ORTHO05D007279 1.0e-33 148.3 265 36.2
AagrBONN_evm.TU.Sc2ySwM_362.2882 Anthoceros agrestis HOM05D005810 ORTHO05D007279 1.5e-32 144.4 267 37.1
Mapoly0092s0013 Marchantia polymorpha HOM05D005810 ORTHO05D007279 3.2e-32 143.3 270 36.7
Lsat_1_v5_gn_5_37760 Lactuca sativa HOM05D005810 ORTHO05D007279 3.7e-28 129.8 121 55.4
CBR_g36821 Chara braunii HOM05D005810 ORTHO05D007279 8.3e-28 128.6 120 47.5
SMO351G0210 Selaginella moellendorffii HOM05D005810 ORTHO05D007279 2.4e-27 127.1 244 33.2
Hma1.2p1_0083F.1_g042850 Hydrangea macrophylla HOM05D005810 ORTHO05D007279 3.8e-25 119.8 145 50.3
CiPaw.07G064800 Carya illinoinensis HOM05D005810 ORTHO05D007279 1.9e-24 117.5 103 57.3
FAN05G1843 Fragaria x ananassa HOM05D005810 ORTHO05D007279 1.8e-22 110.9 269 34.6
ClCG06G009160 Citrullus lanatus HOM05D005810 ORTHO05D007279 3.0e-22 110.2 143 44.8
Manes.08G132300 Manihot esculenta HOM05D005810 ORTHO05D007279 5.2e-22 109.4 103 58.3
CsaV3_UNG004060 Cucumis sativus L. HOM05D005810 ORTHO05D007279 7.5e-21 105.5 148 43.2
FAN09G1409 Fragaria x ananassa HOM05D005810 ORTHO05D007279 7.5e-21 105.5 158 45.6
CsaV3_1G045610 Cucumis sativus L. HOM05D005810 ORTHO05D007279 4.1e-19 99.8 131 43.5
CsaV3_UNG004080 Cucumis sativus L. HOM05D005810 ORTHO05D007279 1.3e-17 94.7 105 49.5
MCO09G788 Micromonas commoda HOM05D005810 ORTHO05D007279 1.1e-16 91.7 211 28.9
PRCOL_00005025 Prasinoderma coloniale HOM05D005810 ORTHO05D007279 2.1e-15 87.4 213 28.6
Sc09g0003830 Simmondsia chinensis HOM05D005810 ORTHO05D007279 2.1e-15 87.4 88 50.0
CsaV3_1G045590 Cucumis sativus L. HOM05D005810 ORTHO05D007279 6.1e-15 85.9 98 48.0
SMO364G0521 Selaginella moellendorffii HOM05D005810 ORTHO05D007279 4.0e-14 83.2 244 27.9
Cre01.g007651 Chlamydomonas reinhardtii HOM05D005810 ORTHO05D007279 1.1e-08 65.1 95 31.6
Cc02_g31830 Coffea canephora HOM05D005810 ORTHO05D007279 4.0e-06 56.6 59 50.8


User provided reference genes

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