Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0005596g0070 Nicotiana tabacum HOM05D003089 ORTHO05D003544 1.7e-114 416.0 210 100.0
Nitab4.5_0000736g0060 Nicotiana tabacum HOM05D003089 ORTHO05D003544 2.7e-67 259.2 239 62.8
Solyc11g043120.2 Solanum lycopersicum HOM05D003089 ORTHO05D003544 7.8e-67 257.7 239 62.3
Sopen11g019550 Solanum pennellii HOM05D003089 ORTHO05D003544 7.8e-67 257.7 239 62.3
CAN.G566.47 Capsicum annuum HOM05D003089 ORTHO05D003544 1.3e-66 256.9 239 62.3
Peaxi162Scf00684g00421 Petunia axillaris HOM05D003089 ORTHO05D003544 8.6e-66 254.2 239 61.9
Peaxi162Scf00061g00027 Petunia axillaris HOM05D003089 ORTHO05D003544 6.2e-64 248.1 237 59.9
Peaxi162Scf00242g00110 Petunia axillaris HOM05D003089 ORTHO05D003544 4.0e-63 245.4 258 56.6
Dinv42085 Davidia involucrata HOM05D003089 ORTHO05D003544 6.8e-63 244.6 246 56.5
HanXRQChr08g0216591 Helianthus annuus HOM05D003089 ORTHO05D003544 1.5e-62 243.4 240 57.1
AUR62011350 Chenopodium quinoa HOM05D003089 ORTHO05D003544 2.6e-62 242.7 248 56.0
ECA234G4407 Erigeron canadensis HOM05D003089 ORTHO05D003544 5.8e-62 241.5 240 56.7
Ciclev10027664m.g Citrus clementina HOM05D003089 ORTHO05D003544 7.6e-62 241.1 243 56.4
BcaB07g33546 Brassica carinata HOM05D003089 ORTHO05D003544 9.9e-62 240.7 240 57.5
Thhalv10011177m.g Eutrema salsugineum HOM05D003089 ORTHO05D003544 9.9e-62 240.7 238 58.0
Lsat_1_v5_gn_9_109381 Lactuca sativa HOM05D003089 ORTHO05D003544 1.7e-61 240.0 243 55.6
Gohir.A04G117000 Gossypium hirsutum HOM05D003089 ORTHO05D003544 2.2e-61 239.6 239 57.3
EL10Ac9g21746 Beta vulgaris HOM05D003089 ORTHO05D003544 2.9e-61 239.2 242 55.8
Prupe.8G100100 Prunus persica HOM05D003089 ORTHO05D003544 2.9e-61 239.2 239 56.9
AL1G56300 Arabidopsis lyrata HOM05D003089 ORTHO05D003544 3.8e-61 238.8 238 57.6
SGA_v2.0_scaffold58G20555 Striga asiatica HOM05D003089 ORTHO05D003544 3.8e-61 238.8 240 57.5
A06p02740 Brassica napus HOM05D003089 ORTHO05D003544 4.9e-61 238.4 238 57.6
CsaV3_2G014550 Cucumis sativus L. HOM05D003089 ORTHO05D003544 4.9e-61 238.4 240 57.1
Oeu020770.2 Olea europaea HOM05D003089 ORTHO05D003544 4.9e-61 238.4 241 56.4
Sp1g36200 Schrenkiella parvula HOM05D003089 ORTHO05D003544 4.9e-61 238.4 240 56.7
AT1G49340 Arabidopsis thaliana HOM05D003089 ORTHO05D003544 6.4e-61 238.0 240 57.1
BcaB02g11071 Brassica carinata HOM05D003089 ORTHO05D003544 6.4e-61 238.0 240 57.1
A05p20670 Brassica napus HOM05D003089 ORTHO05D003544 6.4e-61 238.0 240 57.1
C06p06220 Brassica napus HOM05D003089 ORTHO05D003544 6.4e-61 238.0 238 57.1
BolC5t32215H Brassica oleracea HOM05D003089 ORTHO05D003544 6.4e-61 238.0 240 57.1
BolC6t35733H Brassica oleracea HOM05D003089 ORTHO05D003544 6.4e-61 238.0 238 57.1
BraA05t20975Z Brassica rapa HOM05D003089 ORTHO05D003544 6.4e-61 238.0 240 57.1
Gohir.D04G158700 Gossypium hirsutum HOM05D003089 ORTHO05D003544 6.4e-61 238.0 239 56.5
Gorai.012G146100 Gossypium raimondii HOM05D003089 ORTHO05D003544 6.4e-61 238.0 239 56.5
Potri.004G152400 Populus trichocarpa HOM05D003089 ORTHO05D003544 6.4e-61 238.0 238 56.3
BcaC05g27516 Brassica carinata HOM05D003089 ORTHO05D003544 8.4e-61 237.7 240 57.1
BcaC08g43133 Brassica carinata HOM05D003089 ORTHO05D003544 8.4e-61 237.7 238 57.6
C05p34900 Brassica napus HOM05D003089 ORTHO05D003544 8.4e-61 237.7 240 57.1
C06p04080 Brassica napus HOM05D003089 ORTHO05D003544 8.4e-61 237.7 238 57.6
BolC6t35540H Brassica oleracea HOM05D003089 ORTHO05D003544 8.4e-61 237.7 238 57.6
Lsat_1_v5_gn_5_118040 Lactuca sativa HOM05D003089 ORTHO05D003544 8.4e-61 237.7 239 56.5
QL11p043039 Quercus lobata HOM05D003089 ORTHO05D003544 8.4e-61 237.7 237 57.0
Hund06224 Selenicereus undatus HOM05D003089 ORTHO05D003544 8.4e-61 237.7 242 56.2
Ah.01g019560 Amaranthus hybridus HOM05D003089 ORTHO05D003544 1.1e-60 237.3 242 55.4
BcaB07g33678 Brassica carinata HOM05D003089 ORTHO05D003544 1.1e-60 237.3 238 57.6
A06p03880 Brassica napus HOM05D003089 ORTHO05D003544 1.1e-60 237.3 238 57.6
BraA06t23482Z Brassica rapa HOM05D003089 ORTHO05D003544 1.1e-60 237.3 240 57.1
BraA06t23597Z Brassica rapa HOM05D003089 ORTHO05D003544 1.1e-60 237.3 238 57.6
Lj9C368G4 Lonicera japonica HOM05D003089 ORTHO05D003544 1.1e-60 237.3 241 56.8
Nn4g22984 Nelumbo nucifera HOM05D003089 ORTHO05D003544 1.1e-60 237.3 238 57.1
Actinidia00513 Actinidia chinensis HOM05D003089 ORTHO05D003544 1.4e-60 236.9 238 57.6
AL325U10010 Arabidopsis lyrata HOM05D003089 ORTHO05D003544 1.4e-60 236.9 240 57.9
AL4G25950 Arabidopsis lyrata HOM05D003089 ORTHO05D003544 1.4e-60 236.9 240 57.9
COL.COLO4_32443 Corchorus olitorius HOM05D003089 ORTHO05D003544 1.4e-60 236.9 254 54.7
Lj1g0018032 Lotus japonicus HOM05D003089 ORTHO05D003544 1.4e-60 236.9 241 56.4
Aa31LG10G4610 Aethionema arabicum HOM05D003089 ORTHO05D003544 2.4e-60 236.1 240 56.7
ClCG11G004530 Citrullus lanatus HOM05D003089 ORTHO05D003544 2.4e-60 236.1 240 56.7
FAN15G0570 Fragaria x ananassa HOM05D003089 ORTHO05D003544 2.4e-60 236.1 241 56.0
Sed0010503 Sechium edule HOM05D003089 ORTHO05D003544 2.4e-60 236.1 241 56.8
Carub.0001s3852 Capsella rubella HOM05D003089 ORTHO05D003544 3.2e-60 235.7 240 56.2
CARHR039330 Cardamine hirsuta HOM05D003089 ORTHO05D003544 3.2e-60 235.7 240 56.2
Migut.B00253 Erythranthe guttata HOM05D003089 ORTHO05D003544 3.2e-60 235.7 240 57.1
FvH4_2g08470 Fragaria vesca HOM05D003089 ORTHO05D003544 3.2e-60 235.7 241 55.6
THA.LOC104804915 Tarenaya hassleriana HOM05D003089 ORTHO05D003544 3.2e-60 235.7 238 56.3
DCAR_003639 Daucus carota HOM05D003089 ORTHO05D003544 4.2e-60 235.3 248 55.2
Lalb_Chr23g0265471 Lupinus albus HOM05D003089 ORTHO05D003544 4.2e-60 235.3 241 56.4
Manes.15G165000 Manihot esculenta HOM05D003089 ORTHO05D003544 4.2e-60 235.3 240 55.8
PSO161G0089 Papaver somniferum HOM05D003089 ORTHO05D003544 4.2e-60 235.3 242 56.2
Potri.009G113700 Populus trichocarpa HOM05D003089 ORTHO05D003544 4.2e-60 235.3 239 55.2
CSS0001432 Camellia sinensis var. sinensis HOM05D003089 ORTHO05D003544 5.4e-60 235.0 240 56.2
CANSAT25G2870 Cannabis sativa HOM05D003089 ORTHO05D003544 5.4e-60 235.0 239 56.9
ECA240G3266 Erigeron canadensis HOM05D003829 ORTHO05D003544 5.4e-60 235.0 242 56.2
HanXRQChr10g0307291 Helianthus annuus HOM05D003089 ORTHO05D003544 5.4e-60 235.0 240 55.4
PSO478G0141 Papaver somniferum HOM05D003089 ORTHO05D003544 5.4e-60 235.0 242 56.2
Phvul.009G009000 Phaseolus vulgaris HOM05D003089 ORTHO05D003544 5.4e-60 235.0 238 56.7
RcHm_v2.0_Chr6g0263811 Rosa chinensis HOM05D003089 ORTHO05D003544 5.4e-60 235.0 241 55.2
MSTRG.20096 Avicennia marina HOM05D003089 ORTHO05D003544 7.1e-60 234.6 240 55.0
Duzib052G1069 Durio zibethinus HOM05D003089 ORTHO05D003544 7.1e-60 234.6 237 56.5
Eucgr.G00451 Eucalyptus grandis HOM05D003089 ORTHO05D003544 7.1e-60 234.6 240 56.7
FAN24G1972 Fragaria x ananassa HOM05D003089 ORTHO05D003544 7.1e-60 234.6 241 55.6
FAN24G2674 Fragaria x ananassa HOM05D003089 ORTHO05D003544 7.1e-60 234.6 241 55.6
Lalb_Chr08g0246561 Lupinus albus HOM05D003089 ORTHO05D003544 7.1e-60 234.6 241 56.0
MD10G1078200 Malus domestica HOM05D003089 ORTHO05D003544 7.1e-60 234.6 240 56.2
PGR042G2422 Punica granatum HOM05D003089 ORTHO05D003544 9.3e-60 234.2 243 55.6
SHI05424 Sapria himalayana HOM05D003089 ORTHO05D003544 9.3e-60 234.2 227 58.1
TWI75G1044 Tripterygium wilfordii HOM05D003089 ORTHO05D003544 1.2e-59 233.8 238 56.7
arahy.Tifrunner.gnm1.ann1.AHB8GW Arachis hypogaea HOM05D003089 ORTHO05D003544 1.6e-59 233.4 241 55.6
arahy.Tifrunner.gnm1.ann1.U64SVT Arachis hypogaea HOM05D003089 ORTHO05D003544 1.6e-59 233.4 241 55.6
CiPaw.06G137000 Carya illinoinensis HOM05D003089 ORTHO05D003544 1.6e-59 233.4 241 54.8
Glyma.04G013900 Glycine max HOM05D003089 ORTHO05D003544 1.6e-59 233.4 241 54.8
MD05G1068200 Malus domestica HOM05D003089 ORTHO05D003544 2.7e-59 232.6 242 55.4
Medtr3g116250 Medicago truncatula HOM05D003089 ORTHO05D003544 2.7e-59 232.6 241 55.2
Sabra09G0087300 Salix brachista HOM05D003089 ORTHO05D003544 3.5e-59 232.3 239 55.2
TPR.G38232 Trifolium pratense HOM05D003089 ORTHO05D003544 3.5e-59 232.3 238 56.3
BcaC08g43274 Brassica carinata HOM05D003089 ORTHO05D003544 4.6e-59 231.9 243 56.0
FAN27G3350 Fragaria x ananassa HOM05D003089 ORTHO05D003544 4.6e-59 231.9 241 54.8
Hund00286 Selenicereus undatus HOM05D003089 ORTHO05D003544 4.6e-59 231.9 242 54.5
Thecc.02G123600 Theobroma cacao HOM05D003089 ORTHO05D003544 4.6e-59 231.9 237 55.3
Glyma.06G013800 Glycine max HOM05D003089 ORTHO05D003544 6.0e-59 231.5 240 54.2
Nn3g17070 Nelumbo nucifera HOM05D003089 ORTHO05D003544 6.0e-59 231.5 240 55.8
Sed0019364 Sechium edule HOM05D003089 ORTHO05D003544 6.0e-59 231.5 241 55.2
ATR0749G081 Amborella trichopoda HOM05D003089 ORTHO05D003544 7.8e-59 231.1 239 55.2
Aqoxy3G03189 Aquilegia oxysepala HOM05D003089 ORTHO05D003544 7.8e-59 231.1 238 55.5
CSS0026532 Camellia sinensis var. sinensis HOM05D003089 ORTHO05D003544 7.8e-59 231.1 237 57.4
CSS0027140 Camellia sinensis var. sinensis HOM05D003089 ORTHO05D003544 7.8e-59 231.1 237 57.4
Nitab4.5_0002814g0110 Nicotiana tabacum HOM05D003089 ORTHO05D003544 7.8e-59 231.1 209 62.7
SGA_v2.0_scaffold32G13157 Striga asiatica HOM05D003089 ORTHO05D003544 7.8e-59 231.1 240 55.8
Rhsim11G0174300 Rhododendron simsii HOM05D003089 ORTHO05D003544 1.0e-58 230.7 243 55.6
ClCG02G005170 Citrullus lanatus HOM05D003089 ORTHO05D003544 1.3e-58 230.3 242 55.0
SalBow6G2407 Salvia bowleyana HOM05D003089 ORTHO05D003544 1.7e-58 229.9 245 54.7
SalBow6G4859 Salvia bowleyana HOM05D003089 ORTHO05D003544 1.7e-58 229.9 245 54.7
Psat5g008280 Pisum sativum HOM05D003089 ORTHO05D003544 3.0e-58 229.2 241 55.2
AUR62016712 Chenopodium quinoa HOM05D003089 ORTHO05D003544 3.9e-58 228.8 242 54.1
MELO3C012545.2 Cucumis melo HOM05D003089 ORTHO05D003544 3.9e-58 228.8 242 54.5
MBI03_g27663_MAGBIO Magnolia biondii HOM05D003089 ORTHO05D003544 5.1e-58 228.4 239 55.2
Ca_15379_v3 Cicer arietinum L. HOM05D003089 ORTHO05D003544 6.6e-58 228.0 241 55.2
Sc18g0004600 Simmondsia chinensis HOM05D003089 ORTHO05D003544 8.7e-58 227.6 242 53.7
CsaV3_7G023410 Cucumis sativus L. HOM05D003089 ORTHO05D003544 1.1e-57 227.3 242 54.1
Cc02_g17780 Coffea canephora HOM05D003089 ORTHO05D003544 1.5e-57 226.9 241 53.9
VMungo1309G0726 Vigna mungo HOM05D003089 ORTHO05D003544 1.5e-57 226.9 239 55.6
Nitab4.5_0000982g0100 Nicotiana tabacum HOM05D003089 ORTHO05D003544 1.9e-57 226.5 209 61.7
Sp1g37760 Schrenkiella parvula HOM05D003089 ORTHO05D003544 1.9e-57 226.5 240 54.6
Atru.chr5.2983 Acer truncatum HOM05D003089 ORTHO05D003544 2.5e-57 226.1 239 54.8
TAR369G0923 Trochodendron aralioides HOM05D003089 ORTHO05D003544 2.5e-57 226.1 239 54.8
Aa31LG10G3360 Aethionema arabicum HOM05D003089 ORTHO05D003544 3.3e-57 225.7 240 55.0
TAR622G0009 Trochodendron aralioides HOM05D003089 ORTHO05D003544 3.3e-57 225.7 239 55.2
Carub.0001s3993 Capsella rubella HOM05D003089 ORTHO05D003544 7.3e-57 224.6 238 54.6
CANSAT21G0290 Cannabis sativa HOM05D003089 ORTHO05D003544 6.2e-56 221.5 239 53.6
HPP92_026531 Vanilla planifolia HOM05D003089 ORTHO05D003544 6.2e-56 221.5 242 52.1
Os03g0711200 Oryza sativa ssp. japonica HOM05D003089 ORTHO05D003544 1.1e-55 220.7 241 53.1
Thhalv10012090m.g Eutrema salsugineum HOM05D003089 ORTHO05D003544 1.4e-55 220.3 240 52.9
CDE04G3709 Ceratophyllum demersum HOM05D003089 ORTHO05D003544 3.1e-55 219.2 241 52.3
vmacro02130 Vaccinium macrocarpon HOM05D003089 ORTHO05D003544 4.0e-55 218.8 247 53.4
Zm00001eb216400 Zea mays HOM05D003089 ORTHO05D003544 4.0e-55 218.8 240 52.1
GSVIVG01031931001 Vitis vinifera HOM05D003089 ORTHO05D003544 5.3e-55 218.4 239 54.4
Actinidia07473 Actinidia chinensis HOM05D003089 ORTHO05D003544 6.9e-55 218.0 236 55.1
Gohir.A03G179500 Gossypium hirsutum HOM05D003089 ORTHO05D003544 3.4e-54 215.7 238 51.3
Gohir.D02G202895 Gossypium hirsutum HOM05D003089 ORTHO05D003544 3.4e-54 215.7 238 51.3
Gorai.005G228400 Gossypium raimondii HOM05D003089 ORTHO05D003544 4.4e-54 215.3 238 51.3
Sabra04G0101100 Salix brachista HOM05D003089 ORTHO05D003544 7.6e-54 214.5 294 45.9
SMO116G0267 Selaginella moellendorffii HOM05D003089 ORTHO05D003544 9.9e-54 214.2 237 51.9
Mapoly0001s0451 Marchantia polymorpha HOM05D003089 ORTHO05D003544 1.3e-53 213.8 243 50.6
Cpa.g.sc62.125 Carica papaya HOM05D003089 ORTHO05D003544 1.7e-53 213.4 240 52.1
vmacro02128 Vaccinium macrocarpon HOM05D003089 ORTHO05D003544 1.7e-53 213.4 283 48.1
AagrBONN_evm.TU.Sc2ySwM_344.1888 Anthoceros agrestis HOM05D003089 ORTHO05D003544 6.4e-53 211.5 243 51.4
Haze_02363 Corylus avellana HOM05D003089 ORTHO05D003544 6.4e-53 211.5 273 47.3
Mapoly0001s0228 Marchantia polymorpha HOM05D003089 ORTHO05D003544 4.6e-51 205.3 241 51.9
Pp3c5_19540 Physcomitrium patens HOM05D003089 ORTHO05D003544 7.8e-51 204.5 242 48.3
Lj5C199G5 Lonicera japonica HOM05D003089 ORTHO05D003544 1.7e-50 203.4 209 55.0
unitig_61.g25998 Utricularia gibba HOM05D003089 ORTHO05D003544 5.6e-49 198.4 225 52.0
Pp3c22_1940 Physcomitrium patens HOM05D003089 ORTHO05D003544 2.1e-48 196.4 240 49.6
SEGI_28498 Sequoiadendron giganteum HOM05D003089 ORTHO05D003544 3.6e-48 195.7 210 53.3
Nitab4.5_0000336g0120 Nicotiana tabacum HOM05D003089 ORTHO05D003544 8.1e-48 194.5 196 59.2
CBR_g31025 Chara braunii HOM05D003089 ORTHO05D003544 2.0e-46 189.9 243 45.7
AL1G56510 Arabidopsis lyrata HOM05D003089 ORTHO05D003544 2.9e-45 186.0 190 55.8
AT1G51040 Arabidopsis thaliana HOM05D003089 ORTHO05D003544 1.4e-44 183.7 194 56.2
MBI16_g11567_MAGBIO Magnolia biondii HOM05D003089 ORTHO05D003544 2.1e-32 143.3 232 39.2
HPP92_026558 Vanilla planifolia HOM05D003089 ORTHO05D003544 1.0e-29 134.4 242 38.0
Lsat_1_v5_gn_3_72420 Lactuca sativa HOM05D003089 ORTHO05D003544 2.5e-28 129.8 86 73.3
Lsat_1_v5_gn_7_3121 Lactuca sativa HOM05D003089 ORTHO05D006732 3.2e-28 129.4 86 72.1
Lsat_1_v5_gn_7_31520 Lactuca sativa HOM05D003089 ORTHO05D003544 3.2e-28 129.4 86 72.1
BcaC05g27375 Brassica carinata HOM05D003089 ORTHO05D003544 7.9e-19 98.2 88 58.0
Duzib132G0336 Durio zibethinus HOM05D003089 ORTHO05D003544 2.8e-16 89.7 76 63.2
Psat0s6522g0040 Pisum sativum HOM05D003089 ORTHO05D003544 6.3e-16 88.6 71 64.8
Cfa027017 Carpinus fangiana HOM05D003089 ORTHO05D003544 3.4e-14 82.8 248 28.2
Cre05.g245550 Chlamydomonas reinhardtii HOM05D003089 ORTHO05D003544 4.5e-14 82.4 240 32.1
Peaxi162Scf00242g00009 Petunia axillaris HOM05D003089 ORTHO05D003544 2.8e-08 63.2 32 90.6
C05p33050 Brassica napus HOM05D003089 ORTHO05D003544 2.6e-06 56.6 41 61.0
BolC5t32031H Brassica oleracea HOM05D003089 ORTHO05D003544 2.6e-06 56.6 41 61.0


User provided reference genes

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