Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0005596g0020 Nicotiana tabacum HOM05D003089 ORTHO05D003544 5.3e-47 190.7 95 100.0
Nitab4.5_0000336g0120 Nicotiana tabacum HOM05D003089 ORTHO05D003544 4.0e-18 94.7 57 84.2
Nitab4.5_0000736g0060 Nicotiana tabacum HOM05D003089 ORTHO05D003544 4.0e-18 94.7 57 84.2
Peaxi162Scf00684g00421 Petunia axillaris HOM05D003089 ORTHO05D003544 4.0e-18 94.7 57 84.2
Solyc11g043130.2 Solanum lycopersicum HOM05D003089 ORTHO05D003544 2.0e-17 92.4 57 82.5
Sopen11g019550 Solanum pennellii HOM05D003089 ORTHO05D003544 2.0e-17 92.4 57 82.5
CSS0026532 Camellia sinensis var. sinensis HOM05D003089 ORTHO05D003544 9.8e-17 90.1 56 80.4
CSS0027140 Camellia sinensis var. sinensis HOM05D003089 ORTHO05D003544 9.8e-17 90.1 56 80.4
CAN.G566.47 Capsicum annuum HOM05D003089 ORTHO05D003544 2.2e-16 89.0 57 78.9
SGA_v2.0_scaffold32G13157 Striga asiatica HOM05D003089 ORTHO05D003544 2.2e-16 89.0 55 80.0
SGA_v2.0_scaffold58G20555 Striga asiatica HOM05D003089 ORTHO05D003544 2.2e-16 89.0 55 80.0
Lj9C368G4 Lonicera japonica HOM05D003089 ORTHO05D003544 2.8e-16 88.6 56 78.6
Nitab4.5_0002814g0110 Nicotiana tabacum HOM05D003089 ORTHO05D003544 3.7e-16 88.2 57 80.7
Oeu020770.2 Olea europaea HOM05D003089 ORTHO05D003544 4.8e-16 87.8 55 78.2
Migut.B00253 Erythranthe guttata HOM05D003089 ORTHO05D003544 8.3e-16 87.0 55 78.2
Cc02_g17780 Coffea canephora HOM05D003089 ORTHO05D003544 1.1e-15 86.7 55 76.4
HanXRQChr08g0216591 Helianthus annuus HOM05D003089 ORTHO05D003544 1.1e-15 86.7 55 76.4
Dinv42085 Davidia involucrata HOM05D003089 ORTHO05D003544 1.4e-15 86.3 56 75.0
Nitab4.5_0000982g0100 Nicotiana tabacum HOM05D003089 ORTHO05D003544 1.4e-15 86.3 57 78.9
ECA234G4407 Erigeron canadensis HOM05D003089 ORTHO05D003544 2.4e-15 85.5 55 76.4
Lsat_1_v5_gn_5_118040 Lactuca sativa HOM05D003089 ORTHO05D003544 2.4e-15 85.5 55 76.4
Actinidia00513 Actinidia chinensis HOM05D003089 ORTHO05D003544 4.1e-15 84.7 56 76.8
DCAR_003639 Daucus carota HOM05D003089 ORTHO05D003544 4.1e-15 84.7 56 75.0
SalBow6G2407 Salvia bowleyana HOM05D003089 ORTHO05D003544 4.1e-15 84.7 55 76.4
SalBow6G4859 Salvia bowleyana HOM05D003089 ORTHO05D003544 4.1e-15 84.7 55 76.4
ECA240G3266 Erigeron canadensis HOM05D003829 ORTHO05D003544 1.2e-14 83.2 55 74.5
Nn1g03865 Nelumbo nucifera HOM05D003089 ORTHO05D003544 1.2e-14 83.2 55 74.5
Atru.chr5.2984 Acer truncatum HOM05D003089 ORTHO05D003544 1.6e-14 82.8 56 73.2
unitig_61.g25998 Utricularia gibba HOM05D003089 ORTHO05D003544 2.0e-14 82.4 55 72.7
MSTRG.20096 Avicennia marina HOM05D003089 ORTHO05D003544 2.7e-14 82.0 57 70.2
COL.COLO4_32443 Corchorus olitorius HOM05D003089 ORTHO05D003544 2.7e-14 82.0 88 53.4
Gohir.A03G179500 Gossypium hirsutum HOM05D003089 ORTHO05D003544 2.7e-14 82.0 56 73.2
Gohir.D02G202895 Gossypium hirsutum HOM05D003089 ORTHO05D003544 2.7e-14 82.0 56 73.2
HanXRQChr10g0307291 Helianthus annuus HOM05D003089 ORTHO05D003544 4.5e-14 81.3 55 72.7
CiPaw.06G137000 Carya illinoinensis HOM05D003089 ORTHO05D003544 5.9e-14 80.9 56 73.2
Duzib052G1069 Durio zibethinus HOM05D003089 ORTHO05D003544 5.9e-14 80.9 88 52.3
Eucgr.G00451 Eucalyptus grandis HOM05D003089 ORTHO05D003544 5.9e-14 80.9 56 69.6
Rhsim11G0174300 Rhododendron simsii HOM05D003089 ORTHO05D003544 5.9e-14 80.9 56 76.8
Gorai.005G228400 Gossypium raimondii HOM05D003089 ORTHO05D003544 1.0e-13 80.1 56 71.4
Nn3g17070 Nelumbo nucifera HOM05D003089 ORTHO05D003544 1.0e-13 80.1 56 71.4
ClCG11G004530 Citrullus lanatus HOM05D003089 ORTHO05D003544 1.3e-13 79.7 61 63.9
Gohir.A04G117000 Gossypium hirsutum HOM05D003089 ORTHO05D003544 1.3e-13 79.7 56 71.4
Lsat_1_v5_gn_1_62281 Lactuca sativa HOM05D003089 ORTHO05D003544 1.3e-13 79.7 55 70.9
Lsat_1_v5_gn_4_53741 Lactuca sativa HOM05D003089 ORTHO05D003544 1.3e-13 79.7 55 70.9
Lsat_1_v5_gn_9_109381 Lactuca sativa HOM05D003089 ORTHO05D003544 1.3e-13 79.7 55 70.9
TAR622G0009 Trochodendron aralioides HOM05D003089 ORTHO05D003544 1.3e-13 79.7 56 69.6
Cpa.g.sc62.125 Carica papaya HOM05D003089 ORTHO05D003544 1.7e-13 79.3 56 71.4
TWI75G1044 Tripterygium wilfordii HOM05D003089 ORTHO05D003544 1.7e-13 79.3 55 70.9
Lj5C199G5 Lonicera japonica HOM05D003089 ORTHO05D003544 2.3e-13 79.0 56 71.4
Thecc.02G123600 Theobroma cacao HOM05D003089 ORTHO05D003544 2.3e-13 79.0 89 50.6
Aa31LG10G4610 Aethionema arabicum HOM05D003089 ORTHO05D003544 2.9e-13 78.6 56 71.4
Prupe.8G100100 Prunus persica HOM05D003089 ORTHO05D003544 2.9e-13 78.6 56 71.4
CANSAT25G2870 Cannabis sativa HOM05D003089 ORTHO05D003544 3.8e-13 78.2 56 69.6
Duzib132G0336 Durio zibethinus HOM05D003089 ORTHO05D003544 3.8e-13 78.2 56 69.6
Gohir.D04G158700 Gossypium hirsutum HOM05D003089 ORTHO05D003544 3.8e-13 78.2 56 69.6
Gorai.012G146100 Gossypium raimondii HOM05D003089 ORTHO05D003544 3.8e-13 78.2 56 69.6
Manes.15G165000 Manihot esculenta HOM05D003089 ORTHO05D003544 3.8e-13 78.2 56 73.2
vmacro02128 Vaccinium macrocarpon HOM05D003089 ORTHO05D003544 5.0e-13 77.8 56 75.0
Ciclev10027664m.g Citrus clementina HOM05D003089 ORTHO05D003544 6.5e-13 77.4 56 69.6
FvH4_2g08470 Fragaria vesca HOM05D003089 ORTHO05D003544 6.5e-13 77.4 55 70.9
FAN15G0570 Fragaria x ananassa HOM05D003089 ORTHO05D003544 6.5e-13 77.4 55 70.9
FAN27G3350 Fragaria x ananassa HOM05D003089 ORTHO05D003544 6.5e-13 77.4 55 70.9
RcHm_v2.0_Chr6g0263811 Rosa chinensis HOM05D003089 ORTHO05D003544 6.5e-13 77.4 55 70.9
Haze_02363 Corylus avellana HOM05D003089 ORTHO05D003544 8.6e-13 77.0 56 71.4
MD10G1078200 Malus domestica HOM05D003089 ORTHO05D003544 8.6e-13 77.0 56 71.4
Peaxi162Scf00242g00019 Petunia axillaris HOM05D003089 ORTHO05D003544 8.6e-13 77.0 57 71.9
PGR042G2422 Punica granatum HOM05D003089 ORTHO05D003544 8.6e-13 77.0 56 75.0
THA.LOC104804915 Tarenaya hassleriana HOM05D003089 ORTHO05D003544 8.6e-13 77.0 56 69.6
CsaV3_2G014550 Cucumis sativus L. HOM05D003089 ORTHO05D003544 1.1e-12 76.6 55 69.1
Lsat_1_v5_gn_2_2580 Lactuca sativa HOM05D003089 ORTHO05D003544 1.1e-12 76.6 55 67.3
MD05G1068200 Malus domestica HOM05D003089 ORTHO05D003544 1.1e-12 76.6 56 71.4
vmacro02129 Vaccinium macrocarpon HOM05D003089 ORTHO05D003544 1.1e-12 76.6 56 73.2
GSVIVG01031931001 Vitis vinifera HOM05D003089 ORTHO05D003544 1.1e-12 76.6 56 69.6
CDE04G2374 Ceratophyllum demersum HOM05D003089 ORTHO05D003544 1.5e-12 76.3 56 64.3
FAN24G1972 Fragaria x ananassa HOM05D003089 ORTHO05D003544 1.9e-12 75.9 55 70.9
FAN24G2674 Fragaria x ananassa HOM05D003089 ORTHO05D003544 1.9e-12 75.9 55 70.9
Potri.009G113700 Populus trichocarpa HOM05D003089 ORTHO05D003544 1.9e-12 75.9 56 71.4
QL11p043039 Quercus lobata HOM05D003089 ORTHO05D003544 1.9e-12 75.9 55 70.9
Sed0019364 Sechium edule HOM05D003089 ORTHO05D003544 1.9e-12 75.9 56 69.6
AL1G56300 Arabidopsis lyrata HOM05D003089 ORTHO05D003544 2.5e-12 75.5 56 67.9
AT1G49340 Arabidopsis thaliana HOM05D003089 ORTHO05D003544 2.5e-12 75.5 56 67.9
BcaB07g33678 Brassica carinata HOM05D003089 ORTHO05D003544 2.5e-12 75.5 56 67.9
BcaC08g43133 Brassica carinata HOM05D003089 ORTHO05D003544 2.5e-12 75.5 56 67.9
A06p03880 Brassica napus HOM05D003089 ORTHO05D003544 2.5e-12 75.5 56 67.9
C06p04080 Brassica napus HOM05D003089 ORTHO05D003544 2.5e-12 75.5 56 67.9
BolC6t35540H Brassica oleracea HOM05D003089 ORTHO05D003544 2.5e-12 75.5 56 67.9
BraA06t23597Z Brassica rapa HOM05D003089 ORTHO05D003544 2.5e-12 75.5 56 67.9
Carub.0001s3852 Capsella rubella HOM05D003089 ORTHO05D003544 2.5e-12 75.5 56 67.9
MELO3C012545.2 Cucumis melo HOM05D003089 ORTHO05D003544 2.5e-12 75.5 56 67.9
Sabra09G0087300 Salix brachista HOM05D003089 ORTHO05D003544 2.5e-12 75.5 56 71.4
Sp1g36200 Schrenkiella parvula HOM05D003089 ORTHO05D003544 2.5e-12 75.5 56 67.9
BcaB02g11071 Brassica carinata HOM05D003089 ORTHO05D003544 4.2e-12 74.7 56 67.9
BcaC05g27516 Brassica carinata HOM05D003089 ORTHO05D003544 4.2e-12 74.7 56 67.9
A05p20670 Brassica napus HOM05D003089 ORTHO05D003544 4.2e-12 74.7 56 67.9
C05p34900 Brassica napus HOM05D003089 ORTHO05D003544 4.2e-12 74.7 56 67.9
BolC5t32215H Brassica oleracea HOM05D003089 ORTHO05D003544 4.2e-12 74.7 56 67.9
BraA05t20975Z Brassica rapa HOM05D003089 ORTHO05D003544 4.2e-12 74.7 56 67.9
Thhalv10011177m.g Eutrema salsugineum HOM05D003089 ORTHO05D003544 4.2e-12 74.7 56 67.9
Peaxi162Scf00242g00009 Petunia axillaris HOM05D003089 ORTHO05D003544 7.2e-12 73.9 57 64.9
Sc18g0004600 Simmondsia chinensis HOM05D003089 ORTHO05D003544 7.2e-12 73.9 55 67.3
CARHR039330 Cardamine hirsuta HOM05D003089 ORTHO05D003544 9.5e-12 73.6 56 66.1
ClCG02G005170 Citrullus lanatus HOM05D003089 ORTHO05D003544 9.5e-12 73.6 56 66.1
EL10Ac9g21746 Beta vulgaris HOM05D003089 ORTHO05D003544 1.2e-11 73.2 55 65.5
AUR62011350 Chenopodium quinoa HOM05D003089 ORTHO05D003544 1.2e-11 73.2 55 65.5
CsaV3_7G023410 Cucumis sativus L. HOM05D003089 ORTHO05D003544 1.2e-11 73.2 56 66.1
Glyma.06G013800 Glycine max HOM05D003089 ORTHO05D003544 1.2e-11 73.2 56 69.6
ATR0749G081 Amborella trichopoda HOM05D003089 ORTHO05D003544 1.6e-11 72.8 56 62.5
Phvul.009G009000 Phaseolus vulgaris HOM05D003089 ORTHO05D003544 1.6e-11 72.8 56 69.6
AUR62016712 Chenopodium quinoa HOM05D003089 ORTHO05D003544 2.1e-11 72.4 55 63.6
Potri.004G152400 Populus trichocarpa HOM05D003089 ORTHO05D003544 2.1e-11 72.4 56 69.6
Aqoxy3G03189 Aquilegia oxysepala HOM05D003089 ORTHO05D003544 3.6e-11 71.6 56 60.7
Ah.01g019560 Amaranthus hybridus HOM05D003089 ORTHO05D003544 4.7e-11 71.2 55 63.6
Psat5g008280 Pisum sativum HOM05D003089 ORTHO05D003544 4.7e-11 71.2 56 66.1
VMungo1309G0726 Vigna mungo HOM05D003089 ORTHO05D003544 4.7e-11 71.2 56 67.9
Glyma.04G013900 Glycine max HOM05D003089 ORTHO05D003544 6.1e-11 70.9 56 67.9
PSO161G0089 Papaver somniferum HOM05D003089 ORTHO05D003544 6.1e-11 70.9 55 67.3
PSO478G0141 Papaver somniferum HOM05D003089 ORTHO05D003544 6.1e-11 70.9 55 67.3
Sabra04G0101100 Salix brachista HOM05D003089 ORTHO05D003544 6.1e-11 70.9 56 67.9
Hund00286 Selenicereus undatus HOM05D003089 ORTHO05D003544 6.1e-11 70.9 55 63.6
Lj1g0018032 Lotus japonicus HOM05D003089 ORTHO05D003544 8.0e-11 70.5 56 66.1
Psat0s6522g0040 Pisum sativum HOM05D003089 ORTHO05D003544 8.0e-11 70.5 59 62.7
CAN.G638.23 Capsicum annuum HOM05D003089 ORTHO05D003544 1.4e-10 69.7 57 68.4
Sed0010503 Sechium edule HOM05D003089 ORTHO05D003544 1.4e-10 69.7 55 65.5
Ca_15379_v3 Cicer arietinum L. HOM05D003089 ORTHO05D003544 1.8e-10 69.3 56 64.3
TPR.G38232 Trifolium pratense HOM05D003089 ORTHO05D003544 1.8e-10 69.3 56 64.3
Sp1g37760 Schrenkiella parvula HOM05D003089 ORTHO05D003544 3.0e-10 68.6 56 66.1
Aa31LG10G3360 Aethionema arabicum HOM05D003089 ORTHO05D003544 4.0e-10 68.2 55 63.6
MBI03_g27663_MAGBIO Magnolia biondii HOM05D003089 ORTHO05D003544 5.2e-10 67.8 55 58.2
BcaC08g43274 Brassica carinata HOM05D003089 ORTHO05D003544 1.2e-09 66.6 55 61.8
A06p02740 Brassica napus HOM05D003089 ORTHO05D003544 1.2e-09 66.6 55 61.8
C06p06220 Brassica napus HOM05D003089 ORTHO05D003544 1.2e-09 66.6 55 61.8
BolC6t35733H Brassica oleracea HOM05D003089 ORTHO05D003544 1.2e-09 66.6 55 61.8
Thhalv10012090m.g Eutrema salsugineum HOM05D003089 ORTHO05D003544 1.2e-09 66.6 55 63.6
Lalb_Chr00c44g0412571 Lupinus albus HOM05D003089 ORTHO05D003544 1.2e-09 66.6 56 67.9
Lalb_Chr08g0246561 Lupinus albus HOM05D003089 ORTHO05D003544 1.2e-09 66.6 56 67.9
Lalb_Chr23g0265471 Lupinus albus HOM05D003089 ORTHO05D003544 1.2e-09 66.6 56 67.9
arahy.Tifrunner.gnm1.ann1.AHB8GW Arachis hypogaea HOM05D003089 ORTHO05D003544 4.4e-09 64.7 56 60.7
BraA06t23482Z Brassica rapa HOM05D003089 ORTHO05D003544 4.4e-09 64.7 55 60.0
arahy.Tifrunner.gnm1.ann1.U64SVT Arachis hypogaea HOM05D003089 ORTHO05D003544 5.7e-09 64.3 56 60.7
BcaB07g33546 Brassica carinata HOM05D003089 ORTHO05D003544 5.7e-09 64.3 55 60.0
HPP92_026531 Vanilla planifolia HOM05D003089 ORTHO05D003544 5.7e-09 64.3 57 59.6
Hund06224 Selenicereus undatus HOM05D003089 ORTHO05D003544 7.5e-09 63.9 55 63.6
Carub.0001s3993 Capsella rubella HOM05D003089 ORTHO05D003544 1.3e-08 63.2 56 57.1
HPP92_026558 Vanilla planifolia HOM05D003089 ORTHO05D003544 1.3e-08 63.2 57 57.9
Medtr3g116250 Medicago truncatula HOM05D003089 ORTHO05D003544 2.2e-08 62.4 56 62.5
SHI05424 Sapria himalayana HOM05D003089 ORTHO05D003544 2.8e-08 62.0 56 58.9
CANSAT21G0290 Cannabis sativa HOM05D003089 ORTHO05D003544 3.7e-08 61.6 58 60.3
AL4G25950 Arabidopsis lyrata HOM05D003089 ORTHO05D003544 1.1e-07 60.1 57 57.9


User provided reference genes

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