Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0005477g0070 Nicotiana tabacum HOM05D003921 ORTHO05D004394 9.9e-159 563.5 311 100.0
Nitab4.5_0001620g0040 Nicotiana tabacum HOM05D003921 ORTHO05D004394 1.9e-133 479.6 301 89.4
Solyc01g006170.4 Solanum lycopersicum HOM05D003921 ORTHO05D004394 2.0e-119 433.0 304 77.3
Sopen01g002180 Solanum pennellii HOM05D003921 ORTHO05D004394 2.9e-118 429.1 303 77.2
PGSC0003DMG400032141 Solanum tuberosum HOM05D003921 ORTHO05D004394 3.5e-116 422.2 302 76.5
PGSC0003DMG400032192 Solanum tuberosum HOM05D003921 ORTHO05D004394 1.3e-115 420.2 297 77.1
Solyc01g006090.3 Solanum lycopersicum HOM05D003921 ORTHO05D004394 1.6e-113 413.3 303 75.6
Peaxi162Scf00441g00013 Petunia axillaris HOM05D003921 ORTHO05D004394 1.8e-107 393.3 294 73.8
CAN.G140.50 Capsicum annuum HOM05D003921 ORTHO05D004394 3.0e-99 365.9 303 72.9
Nitab4.5_0000249g0460 Nicotiana tabacum HOM05D003921 ORTHO05D004394 7.2e-93 344.7 288 68.8
Hma1.2p1_0654F.1_g196410 Hydrangea macrophylla HOM05D003921 ORTHO05D004394 1.2e-84 317.4 302 60.6
Migut.J00413 Erythranthe guttata HOM05D003921 ORTHO05D004394 1.8e-80 303.5 298 58.4
Cpa.g.sc3.273 Carica papaya HOM05D003921 ORTHO05D004394 4.1e-80 302.4 305 58.4
vmacro18851 Vaccinium macrocarpon HOM05D003921 ORTHO05D004394 1.2e-79 300.8 308 55.5
Dinv22928 Davidia involucrata HOM05D003921 ORTHO05D004394 1.6e-79 300.4 304 59.9
Potri.015G131200 Populus trichocarpa HOM05D003921 ORTHO05D004394 2.2e-78 296.6 307 58.3
Cfa018157 Carpinus fangiana HOM05D003921 ORTHO05D004394 2.9e-78 296.2 306 56.5
Haze_17961 Corylus avellana HOM05D003921 ORTHO05D004394 2.9e-78 296.2 306 56.5
MBI05_g15474_MAGBIO Magnolia biondii HOM05D003921 ORTHO05D004394 5.0e-78 295.4 298 54.7
Lalb_Chr10g0096111 Lupinus albus HOM05D003921 ORTHO05D004394 2.7e-76 289.7 299 58.2
arahy.Tifrunner.gnm1.ann1.HSUB65 Arachis hypogaea HOM05D003921 ORTHO05D004394 8.0e-76 288.1 283 62.2
Gohir.A07G039500 Gossypium hirsutum HOM05D003921 ORTHO05D004394 8.0e-76 288.1 312 57.7
Cc02_g03920 Coffea canephora HOM05D003921 ORTHO05D004394 1.0e-75 287.7 296 61.5
Aa31LG5G22190 Aethionema arabicum HOM05D003921 ORTHO05D004394 1.8e-75 287.0 306 55.2
Thecc.03G161300 Theobroma cacao HOM05D003921 ORTHO05D004394 2.3e-75 286.6 297 57.6
Rhsim11G0028600 Rhododendron simsii HOM05D003921 ORTHO05D004394 4.0e-75 285.8 291 56.7
Aa31LG5G22200 Aethionema arabicum HOM05D003921 ORTHO05D004394 8.8e-75 284.6 274 58.8
SGA_v2.0_scaffold126G33894 Striga asiatica HOM05D003921 ORTHO05D004394 8.8e-75 284.6 285 63.9
Gohir.D07G043600 Gossypium hirsutum HOM05D003921 ORTHO05D004394 2.0e-74 283.5 312 57.7
Gorai.001G046600 Gossypium raimondii HOM05D003921 ORTHO05D004394 2.0e-74 283.5 312 57.7
Sopen01g002090 Solanum pennellii HOM05D003921 ORTHO05D004394 5.7e-74 282.0 217 72.8
unitig_744.g24672 Utricularia gibba HOM05D003921 ORTHO05D004394 9.8e-74 281.2 287 62.0
Carub.0003s2281 Capsella rubella HOM05D003921 ORTHO05D004394 1.3e-73 280.8 308 56.2
Lsat_1_v5_gn_6_96180 Lactuca sativa HOM05D003921 ORTHO05D004394 2.2e-73 280.0 263 57.8
COL.COLO4_14179 Corchorus olitorius HOM05D003921 ORTHO05D004394 2.8e-73 279.6 296 59.5
QL02p008779 Quercus lobata HOM05D003921 ORTHO05D004394 4.9e-73 278.9 310 58.1
CSS0011813 Camellia sinensis var. sinensis HOM05D003921 ORTHO05D004394 8.3e-73 278.1 300 60.3
Glyma.20G233800 Glycine max HOM05D003921 ORTHO05D004394 1.1e-72 277.7 299 60.2
BcaB06g26378 Brassica carinata HOM05D003921 ORTHO05D004394 1.4e-72 277.3 306 55.9
RcHm_v2.0_Chr1g0375101 Rosa chinensis HOM05D003921 ORTHO05D004394 1.4e-72 277.3 266 59.8
TAR626G1747 Trochodendron aralioides HOM05D003921 ORTHO05D004394 3.1e-72 276.2 310 59.7
A01p32500 Brassica napus HOM05D003921 ORTHO05D004394 4.1e-72 275.8 308 54.5
A05p26040 Brassica napus HOM05D003921 ORTHO05D004394 4.1e-72 275.8 301 55.5
BraA05t21488Z Brassica rapa HOM05D003921 ORTHO05D004394 7.0e-72 275.0 301 55.5
TPR.G27266 Trifolium pratense HOM05D003921 ORTHO05D004394 1.6e-71 273.9 300 59.7
Sed0011284 Sechium edule HOM05D003921 ORTHO05D004394 2.0e-71 273.5 297 58.6
PSO782G4293 Papaver somniferum HOM05D003921 ORTHO05D004394 2.7e-71 273.1 296 59.8
Rhsim07G0193400 Rhododendron simsii HOM05D003921 ORTHO05D004394 4.5e-71 272.3 296 53.7
BraA01t03380Z Brassica rapa HOM05D003921 ORTHO05D004394 5.9e-71 271.9 309 54.7
PSO478G1412 Papaver somniferum HOM05D003921 ORTHO05D004394 5.9e-71 271.9 288 60.4
Sed0026547 Sechium edule HOM05D003921 ORTHO05D004394 5.9e-71 271.9 270 64.8
BcaC09g49188 Brassica carinata HOM05D003921 ORTHO05D004394 1.7e-70 270.4 302 56.3
C01p41660 Brassica napus HOM05D003921 ORTHO05D004394 1.7e-70 270.4 302 56.3
BolC1t04121H Brassica oleracea HOM05D003921 ORTHO05D004394 1.7e-70 270.4 302 56.3
Lj1P984T37 Lonicera japonica HOM05D003921 ORTHO05D004394 1.7e-70 270.4 300 54.7
BraA03t13433Z Brassica rapa HOM05D003921 ORTHO05D004394 2.3e-70 270.0 302 54.3
ClCG01G005120 Citrullus lanatus HOM05D003921 ORTHO05D004394 2.3e-70 270.0 298 58.4
Ciclev10005521m.g Citrus clementina HOM05D003921 ORTHO05D004394 2.3e-70 270.0 268 58.2
CDE07G0272 Ceratophyllum demersum HOM05D003921 ORTHO05D004394 2.9e-70 269.6 294 53.7
ECA234G0656 Erigeron canadensis HOM05D003921 ORTHO05D004394 5.0e-70 268.9 291 55.7
AT3G22660 Arabidopsis thaliana HOM05D003921 ORTHO05D004394 6.6e-70 268.5 307 53.7
Lj3g0006890 Lotus japonicus HOM05D003921 ORTHO05D004394 1.1e-69 267.7 298 55.0
Nitab4.5_0004389g0020 Nicotiana tabacum HOM05D003921 ORTHO05D004394 1.9e-69 266.9 299 54.5
TPR.G19495 Trifolium pratense HOM05D002828 ORTHO05D003457 1.9e-69 266.9 298 59.1
AL3G36960 Arabidopsis lyrata HOM05D003921 ORTHO05D004394 2.5e-69 266.5 308 52.9
MELO3C005417.2 Cucumis melo HOM05D003921 ORTHO05D004394 2.5e-69 266.5 267 58.1
Atru.chr1.637 Acer truncatum HOM05D003921 ORTHO05D004394 4.2e-69 265.8 298 56.0
Thhalv10021245m.g Eutrema salsugineum HOM05D003921 ORTHO05D004394 4.2e-69 265.8 307 52.8
CsaV3_5G005400 Cucumis sativus L. HOM05D003921 ORTHO05D004394 5.5e-69 265.4 270 56.7
PGR042G0045 Punica granatum HOM05D003921 ORTHO05D004394 5.5e-69 265.4 296 58.4
A03p42870 Brassica napus HOM05D003921 ORTHO05D004394 1.2e-68 264.2 301 53.5
BolC3t17533H Brassica oleracea HOM05D003921 ORTHO05D004394 1.6e-68 263.8 271 58.3
DCAR_020219 Daucus carota HOM05D003921 ORTHO05D004394 2.1e-68 263.5 315 54.9
FvH4_7g28160 Fragaria vesca HOM05D003921 ORTHO05D004394 2.1e-68 263.5 266 58.6
TAR636G2246 Trochodendron aralioides HOM05D003921 ORTHO05D004394 2.8e-68 263.1 310 52.6
FAN06G4038 Fragaria x ananassa HOM05D003921 ORTHO05D004394 3.6e-68 262.7 266 58.3
CSS0049059 Camellia sinensis var. sinensis HOM05D003921 ORTHO05D004394 6.1e-68 261.9 300 54.0
Glyma.10G154500 Glycine max HOM05D003921 ORTHO05D004394 6.1e-68 261.9 299 55.5
EL10Ac4g09457 Beta vulgaris HOM05D003921 ORTHO05D004394 8.0e-68 261.5 255 57.3
Eucgr.E01709 Eucalyptus grandis HOM05D003921 ORTHO05D004394 8.0e-68 261.5 304 52.6
ATR0626G386 Amborella trichopoda HOM05D003921 ORTHO05D004394 1.8e-67 260.4 290 53.1
C03p52650 Brassica napus HOM05D003921 ORTHO05D004394 1.8e-67 260.4 271 56.5
BcaB04g20506 Brassica carinata HOM05D003921 ORTHO05D004394 5.2e-67 258.8 311 53.7
FAN03G1144 Fragaria x ananassa HOM05D003921 ORTHO05D004394 5.2e-67 258.8 259 59.1
BcaB04g19210 Brassica carinata HOM05D003921 ORTHO05D004394 8.9e-67 258.1 269 56.9
BcaC01g03432 Brassica carinata HOM05D003921 ORTHO05D004394 8.9e-67 258.1 311 52.4
Aqoxy1G01610 Aquilegia oxysepala HOM05D003921 ORTHO05D004394 1.5e-66 257.3 298 53.7
BcaC05g28029 Brassica carinata HOM05D003921 ORTHO05D004394 1.5e-66 257.3 307 57.3
Sp3g20420 Schrenkiella parvula HOM05D003921 ORTHO05D004394 2.0e-66 256.9 305 51.8
Manes.06G137800 Manihot esculenta HOM05D003921 ORTHO05D004394 3.4e-66 256.1 308 51.3
BolC5t32786H Brassica oleracea HOM05D003921 ORTHO05D004394 5.7e-66 255.4 307 57.0
Phvul.007G264700 Phaseolus vulgaris HOM05D003921 ORTHO05D004394 7.5e-66 255.0 298 57.4
Phvul.007G180200 Phaseolus vulgaris HOM05D003921 ORTHO05D004394 9.8e-66 254.6 296 57.1
TWI23G0331 Tripterygium wilfordii HOM05D003921 ORTHO05D004394 9.8e-66 254.6 291 54.6
HanXRQChr05g0141401 Helianthus annuus HOM05D003921 ORTHO05D004394 1.3e-65 254.2 294 52.4
HanXRQChr08g0224051 Helianthus annuus HOM05D003921 ORTHO05D004394 1.3e-65 254.2 295 53.2
Sc03g0002240 Simmondsia chinensis HOM05D003921 ORTHO05D004394 3.7e-65 252.7 307 48.2
VMungo0720G1998 Vigna mungo HOM05D003921 ORTHO05D004394 3.7e-65 252.7 267 60.3
MD01G1185600 Malus domestica HOM05D003921 ORTHO05D004394 6.3e-65 251.9 287 56.1
TWI14G0513 Tripterygium wilfordii HOM05D003921 ORTHO05D004394 6.3e-65 251.9 303 53.5
Duzib084G0641 Durio zibethinus HOM05D003921 ORTHO05D004394 1.1e-64 251.1 302 53.0
FAN01G0440 Fragaria x ananassa HOM05D003921 ORTHO05D004394 1.4e-64 250.8 251 59.0
FAN06G2146 Fragaria x ananassa HOM05D003921 ORTHO05D004394 1.4e-64 250.8 251 59.0
FAN10G0634 Fragaria x ananassa HOM05D003921 ORTHO05D004394 1.8e-64 250.4 251 59.0
MD07G1257700 Malus domestica HOM05D003921 ORTHO05D004394 2.4e-64 250.0 286 55.9
Prupe.2G282000 Prunus persica HOM05D003921 ORTHO05D004394 2.4e-64 250.0 266 57.9
Lalb_Chr06g0167921 Lupinus albus HOM05D003921 ORTHO05D004394 4.1e-64 249.2 289 52.2
CSS0023430 Camellia sinensis var. sinensis HOM05D003921 ORTHO05D004394 7.0e-64 248.4 294 52.0
Ca_31306_v3 Cicer arietinum L. HOM05D003921 ORTHO05D004394 7.0e-64 248.4 298 58.7
FAN03G3435 Fragaria x ananassa HOM05D003921 ORTHO05D004394 7.0e-64 248.4 251 58.6
Ca_20760_v3 Cicer arietinum L. HOM05D003921 ORTHO05D004394 9.2e-64 248.1 299 57.5
Dinv22984 Davidia involucrata HOM05D003921 ORTHO05D004394 1.2e-63 247.7 286 54.9
Lalb_Chr17g0338581 Lupinus albus HOM05D003921 ORTHO05D004394 1.6e-63 247.3 258 56.2
CiPaw.15G078700 Carya illinoinensis HOM05D003921 ORTHO05D004394 2.7e-63 246.5 299 54.8
Ah.06g188100 Amaranthus hybridus HOM05D003921 ORTHO05D004394 2.9e-62 243.0 297 52.5
THA.LOC104808294 Tarenaya hassleriana HOM05D003921 ORTHO05D004394 6.6e-62 241.9 304 49.7
CANSAT11G2317 Cannabis sativa HOM05D003921 ORTHO05D004394 3.3e-61 239.6 253 54.5
ECA233G5254 Erigeron canadensis HOM05D003921 ORTHO05D004394 1.8e-59 233.8 245 56.3
Rhsim11G0028700 Rhododendron simsii HOM05D003921 ORTHO05D004394 1.8e-59 233.8 291 51.5
Medtr5g028350 Medicago truncatula HOM05D003921 ORTHO05D004394 4.0e-59 232.6 291 55.7
Ah.06g188120 Amaranthus hybridus HOM05D003921 ORTHO05D004394 2.0e-58 230.3 312 52.6
Zm00001eb235000 Zea mays HOM05D003921 ORTHO05D004394 2.0e-58 230.3 288 54.2
Ah.06g188150 Amaranthus hybridus HOM05D003921 ORTHO05D004394 7.5e-58 228.4 299 52.5
CARHR098540 Cardamine hirsuta HOM05D003921 ORTHO05D004394 4.9e-57 225.7 307 52.1
Zm00001eb104900 Zea mays HOM05D003921 ORTHO05D004394 1.9e-56 223.8 261 54.4
AUR62006749 Chenopodium quinoa HOM05D003921 ORTHO05D004394 3.2e-56 223.0 284 52.8
Ciclev10006627m.g Citrus clementina HOM05D003921 ORTHO05D004394 1.5e-53 214.2 279 54.8
AUR62000393 Chenopodium quinoa HOM05D003921 ORTHO05D004394 1.9e-53 213.8 287 48.8
Os07g0475800 Oryza sativa ssp. japonica HOM05D003921 ORTHO05D004394 4.3e-53 212.6 262 52.7
Medtr8g075400 Medicago truncatula HOM05D003921 ORTHO05D004394 1.1e-51 208.0 310 50.3
Psat2g139240 Pisum sativum HOM05D003921 ORTHO05D004394 8.9e-51 204.9 289 51.9
Oeu019922.1 Olea europaea HOM05D003921 ORTHO05D004394 2.9e-49 199.9 255 56.1
Ca_25165_v3 Cicer arietinum L. HOM05D003921 ORTHO05D004394 1.6e-47 194.1 256 56.2
Pp3c6_25210 Physcomitrium patens HOM05D003921 ORTHO05D004394 1.6e-47 194.1 276 43.8
SMO174G0035 Selaginella moellendorffii HOM05D003921 ORTHO05D004394 1.3e-46 191.0 256 46.9
FAN10G0556 Fragaria x ananassa HOM05D003921 ORTHO05D004394 2.3e-46 190.3 192 57.8
SHI13875 Sapria himalayana HOM05D003921 ORTHO05D004394 1.9e-45 187.2 286 45.8
CDE04G0151 Ceratophyllum demersum HOM05D003921 ORTHO05D004394 7.3e-45 185.3 204 55.9
Oeu019920.1 Olea europaea HOM05D003921 ORTHO05D004394 1.3e-41 174.5 309 49.2
Mapoly0140s0011 Marchantia polymorpha HOM05D003921 ORTHO05D004394 6.0e-39 165.6 276 42.4
MSTRG.14093 Avicennia marina HOM05D003921 ORTHO05D004394 1.1e-37 161.4 172 60.5
Oeu021724.1 Olea europaea HOM05D003921 ORTHO05D004394 4.7e-36 156.0 288 41.0
MSTRG.14095 Avicennia marina HOM05D003921 ORTHO05D004394 6.2e-36 155.6 174 56.3
Hund09280 Selenicereus undatus HOM05D003921 ORTHO05D004394 6.2e-36 155.6 177 57.1
Hund09282 Selenicereus undatus HOM05D003921 ORTHO05D004394 6.2e-36 155.6 177 57.1
Nn1g08099 Nelumbo nucifera HOM05D003921 ORTHO05D004394 8.9e-35 151.8 143 55.2
Ca_27419_v3 Cicer arietinum L. HOM05D003921 ORTHO05D004394 1.2e-34 151.4 191 61.3
Ah.06g188070 Amaranthus hybridus HOM05D003921 ORTHO05D004394 1.5e-34 151.0 202 50.5
DCAR_018123 Daucus carota HOM05D003921 ORTHO05D004394 2.6e-34 150.2 292 42.1
HPP92_008700 Vanilla planifolia HOM05D003921 ORTHO05D004394 3.4e-34 149.8 132 58.3
MSTRG.5717 Avicennia marina HOM05D003921 ORTHO05D004394 5.8e-34 149.1 189 58.7
CBR_g18581 Chara braunii HOM05D001161 ORTHO05D000497 7.1e-32 142.1 257 41.2
AagrBONN_evm.TU.Sc2ySwM_228.1082 Anthoceros agrestis HOM05D003921 ORTHO05D004394 1.2e-31 141.4 293 36.5
BcaC09g49189 Brassica carinata HOM05D003921 ORTHO05D004394 1.2e-31 141.4 184 51.1
Eucgr.K01460 Eucalyptus grandis HOM05D003921 ORTHO05D004394 2.5e-29 133.7 145 52.4
Oeu023230.1 Olea europaea HOM05D003921 ORTHO05D004394 4.3e-29 132.9 283 38.2
Nn1g01220 Nelumbo nucifera HOM05D003921 ORTHO05D004394 9.0e-27 125.2 134 45.5
PRCOL_00003036 Prasinoderma coloniale HOM05D003921 ORTHO05D004394 2.0e-26 124.0 253 35.2
RcHm_v2.0_Chr5g0027461 Rosa chinensis HOM05D003921 ORTHO05D017011 1.3e-25 121.3 121 49.6
Cre07.g351750 Chlamydomonas reinhardtii HOM05D003921 ORTHO05D004394 8.4e-25 118.6 256 36.3
GSVIVG01018514001 Vitis vinifera HOM05D003921 ORTHO05D004394 1.4e-24 117.9 296 34.8
MCO16G303 Micromonas commoda HOM05D003921 ORTHO05D004394 1.7e-22 110.9 215 34.9
Prupe.2G115300 Prunus persica HOM05D003921 ORTHO05D004394 4.8e-20 102.8 227 38.3
Actinidia25037 Actinidia chinensis HOM05D003921 ORTHO05D004394 8.1e-20 102.1 95 55.8
Actinidia31394 Actinidia chinensis HOM05D003921 ORTHO05D004394 5.3e-19 99.4 93 66.7
Ah.06g188140 Amaranthus hybridus HOM05D003921 ORTHO05D004394 2.9e-17 93.6 158 46.8
ATR0564G120 Amborella trichopoda HOM05D003921 ORTHO05D004394 6.4e-17 92.4 200 36.5
Actinidia13554 Actinidia chinensis HOM05D003921 ORTHO05D004394 1.4e-16 91.3 69 68.1
Ah.06g188080 Amaranthus hybridus HOM05D003921 ORTHO05D004394 5.5e-16 89.4 90 62.2
Ca_29708_v3 Cicer arietinum L. HOM05D003921 ORTHO05D004394 1.2e-15 88.2 89 61.8
Nn4g26407 Nelumbo nucifera HOM05D003921 ORTHO05D004394 1.6e-15 87.8 168 36.9
Actinidia39598 Actinidia chinensis HOM05D003921 ORTHO05D004394 4.6e-15 86.3 110 41.8
Gohir.D12G264333 Gossypium hirsutum HOM05D003921 ORTHO05D004394 5.1e-14 82.8 253 30.4
Nn4g26401 Nelumbo nucifera HOM05D003921 ORTHO05D004394 1.5e-10 71.2 74 50.0
Dinv10307 Davidia involucrata HOM05D003921 ORTHO05D004394 2.6e-10 70.5 48 68.8
Oeu039213.1 Olea europaea HOM05D003921 ORTHO05D004394 2.2e-09 67.4 61 63.9
Gorai.008G283700 Gossypium raimondii HOM05D003921 ORTHO05D004394 2.9e-09 67.0 287 28.6
CDE08G0595 Ceratophyllum demersum HOM05D003921 ORTHO05D004394 1.9e-08 64.3 116 42.2
Prupe.2G115400 Prunus persica HOM05D003921 ORTHO05D004394 7.1e-08 62.4 69 56.5


User provided reference genes

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