Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0005465g0010 Nicotiana tabacum HOM05D004374 ORTHO05D005430 7.2e-156 553.9 287 100.0
Nitab4.5_0009218g0020 Nicotiana tabacum HOM05D004374 ORTHO05D005430 5.6e-132 474.6 306 84.0
Peaxi162Scf00088g01332 Petunia axillaris HOM05D004374 ORTHO05D005430 4.7e-131 471.5 293 84.3
Nitab4.5_0002008g0060 Nicotiana tabacum HOM05D004374 ORTHO05D005430 6.2e-123 444.5 271 86.3
CAN.G1315.2 Capsicum annuum HOM05D004374 ORTHO05D005430 1.1e-114 417.2 293 75.4
Sopen07g003820 Solanum pennellii HOM05D004374 ORTHO05D005430 5.2e-114 414.8 316 71.5
Solyc07g007940.3 Solanum lycopersicum HOM05D004374 ORTHO05D005430 3.4e-113 412.1 316 71.2
CAN.G1963.3 Capsicum annuum HOM05D004374 ORTHO05D005430 1.6e-107 393.3 342 65.2
Dinv41475 Davidia involucrata HOM05D004374 ORTHO05D005430 4.5e-89 332.0 290 61.0
Hma1.2p1_0343F.1_g130960 Hydrangea macrophylla HOM05D004374 ORTHO05D005430 6.4e-88 328.2 291 59.8
Rhsim01G0061800 Rhododendron simsii HOM05D004374 ORTHO05D005430 4.2e-87 325.5 285 60.4
TAR626G1960 Trochodendron aralioides HOM05D004374 ORTHO05D005430 5.4e-87 325.1 293 58.0
Hma1.2p1_1220F.1_g268070 Hydrangea macrophylla HOM05D004374 ORTHO05D005430 4.6e-86 322.0 293 59.7
Cc06_g08080 Coffea canephora HOM05D004374 ORTHO05D005430 2.5e-84 316.2 249 64.7
Migut.K00426 Erythranthe guttata HOM05D004374 ORTHO05D005430 9.0e-82 307.8 294 57.8
TWI34G0112 Tripterygium wilfordii HOM05D004374 ORTHO05D005430 1.5e-81 307.0 293 54.6
MSTRG.26430 Avicennia marina HOM05D004374 ORTHO05D005430 7.6e-81 304.7 308 53.9
SalBow1G4424 Salvia bowleyana HOM05D004374 ORTHO05D005430 2.9e-80 302.8 306 57.8
Potri.006G065800 Populus trichocarpa HOM05D004374 ORTHO05D005430 6.4e-80 301.6 250 59.6
Nn8g39541 Nelumbo nucifera HOM05D004374 ORTHO05D005430 1.9e-79 300.1 293 54.9
ClCG11G003340 Citrullus lanatus HOM05D004374 ORTHO05D005430 2.5e-79 299.7 293 53.2
TPR.G24785 Trifolium pratense HOM05D004374 ORTHO05D005430 3.2e-79 299.3 250 60.0
TWI34G1386 Tripterygium wilfordii HOM05D004374 ORTHO05D005430 5.5e-79 298.5 293 55.3
Psat4g038960 Pisum sativum HOM05D004374 ORTHO05D005430 9.3e-79 297.7 251 60.2
Ca_06940_v3 Cicer arietinum L. HOM05D004374 ORTHO05D005430 2.7e-78 296.2 284 55.3
Ciclev10002076m.g Citrus clementina HOM05D004374 ORTHO05D005430 2.7e-78 296.2 293 53.9
Prupe.1G493600 Prunus persica HOM05D004374 ORTHO05D005430 2.7e-78 296.2 293 52.6
Ciclev10032301m.g Citrus clementina HOM05D004374 ORTHO05D005430 3.5e-78 295.8 293 53.2
QL02p089838 Quercus lobata HOM05D004374 ORTHO05D005430 1.0e-77 294.3 293 53.6
GSVIVG01015588001 Vitis vinifera HOM05D004374 ORTHO05D005430 1.8e-77 293.5 293 53.9
Lalb_Chr13g0301591 Lupinus albus HOM05D004374 ORTHO05D005430 3.9e-77 292.4 252 57.5
Dinv36480 Davidia involucrata HOM05D004374 ORTHO05D005430 5.1e-77 292.0 255 61.2
HanXRQChr06g0168691 Helianthus annuus HOM05D004374 ORTHO05D005430 5.1e-77 292.0 293 51.9
Medtr4g115320 Medicago truncatula HOM05D004374 ORTHO05D005430 1.5e-76 290.4 250 59.2
Glyma.13G159900 Glycine max HOM05D004374 ORTHO05D005430 3.3e-76 289.3 250 58.4
CsaV3_2G003190 Cucumis sativus L. HOM05D002754 ORTHO05D003271 4.3e-76 288.9 293 51.9
Sabra06G0048000 Salix brachista HOM05D004374 ORTHO05D005430 4.3e-76 288.9 305 51.1
Thecc.09G131900 Theobroma cacao HOM05D004374 ORTHO05D005430 7.4e-76 288.1 278 54.0
vmacro15378 Vaccinium macrocarpon HOM05D004374 ORTHO05D005430 9.6e-76 287.7 321 51.4
arahy.Tifrunner.gnm1.ann1.QKGT17 Arachis hypogaea HOM05D004374 ORTHO05D005430 1.3e-75 287.3 284 53.5
arahy.Tifrunner.gnm1.ann1.RD7K84 Arachis hypogaea HOM05D004374 ORTHO05D005430 1.3e-75 287.3 284 53.2
Phvul.003G168700 Phaseolus vulgaris HOM05D004374 ORTHO05D005430 1.3e-75 287.3 288 53.5
SGA_v2.0_scaffold154G37188 Striga asiatica HOM05D004374 ORTHO05D005430 1.6e-75 287.0 250 56.8
SGA_v2.0_scaffold138G35279 Striga asiatica HOM05D004374 ORTHO05D005430 3.7e-75 285.8 304 52.0
PGR042G2992 Punica granatum HOM05D004374 ORTHO05D005430 6.2e-75 285.0 299 51.2
Aqoxy4G00722 Aquilegia oxysepala HOM05D004374 ORTHO05D005430 1.8e-74 283.5 293 50.2
Manes.06G047300 Manihot esculenta HOM05D004374 ORTHO05D005430 5.3e-74 282.0 250 55.6
MELO3C004466.2 Cucumis melo HOM05D004374 ORTHO05D005430 1.2e-73 280.8 293 51.2
TAR383G0672 Trochodendron aralioides HOM05D004374 ORTHO05D005430 1.2e-73 280.8 266 54.9
Sed0026824 Sechium edule HOM05D004374 ORTHO05D005430 2.0e-73 280.0 297 50.5
MD05G1013300 Malus domestica HOM05D004374 ORTHO05D005430 2.6e-73 279.6 293 50.9
Cpa.g.sc46.39 Carica papaya HOM05D004374 ORTHO05D005430 1.3e-72 277.3 293 53.6
ECA240G2062 Erigeron canadensis HOM05D004374 ORTHO05D005430 2.2e-72 276.6 282 52.8
PGSC0003DMG400030909 Solanum tuberosum HOM05D004374 ORTHO05D005430 2.2e-72 276.6 293 56.7
CANSAT11G1308 Cannabis sativa HOM05D004374 ORTHO05D005430 8.4e-72 274.6 293 49.8
Atru.chr12.84 Acer truncatum HOM05D004374 ORTHO05D005430 1.4e-71 273.9 293 49.8
DCAR_017779 Daucus carota HOM05D004374 ORTHO05D005430 1.4e-71 273.9 338 46.2
Cfa008808 Carpinus fangiana HOM05D004374 ORTHO05D005430 1.9e-71 273.5 255 53.3
Haze_11824 Corylus avellana HOM05D004374 ORTHO05D005430 1.2e-70 270.8 288 50.7
VMungo1215G2312 Vigna mungo HOM05D004374 ORTHO05D005430 3.5e-70 269.2 235 58.7
Duzib168G1544 Durio zibethinus HOM05D004374 ORTHO05D005430 6.0e-70 268.5 278 51.4
Gohir.D05G015500 Gossypium hirsutum HOM05D004374 ORTHO05D005430 6.0e-70 268.5 278 51.1
Lsat_1_v5_gn_7_43761 Lactuca sativa HOM05D004374 ORTHO05D005430 7.9e-70 268.1 295 47.8
Lalb_Chr12g0197301 Lupinus albus HOM05D004374 ORTHO05D005430 1.0e-69 267.7 288 49.7
Gorai.009G015600 Gossypium raimondii HOM05D004374 ORTHO05D005430 2.3e-69 266.5 278 50.7
Lj4g0025213 Lotus japonicus HOM05D004374 ORTHO05D005430 5.1e-69 265.4 285 50.9
Medtr3g113180 Medicago truncatula HOM05D004374 ORTHO05D005430 7.4e-68 261.5 244 55.7
unitig_0.g2039 Utricularia gibba HOM05D004374 ORTHO05D005430 9.7e-68 261.2 344 43.9
Sc18g0000370 Simmondsia chinensis HOM05D004374 ORTHO05D005430 6.3e-67 258.5 285 49.5
AUR62008844 Chenopodium quinoa HOM05D004374 ORTHO05D005430 1.5e-65 253.8 256 50.8
vmacro07719 Vaccinium macrocarpon HOM05D004374 ORTHO05D005430 4.5e-65 252.3 418 39.0
AUR62011174 Chenopodium quinoa HOM05D004374 ORTHO05D005430 1.0e-64 251.1 287 47.4
AUR62025401 Chenopodium quinoa HOM05D004374 ORTHO05D005430 2.9e-64 249.6 256 50.4
MBI04_g39649_MAGBIO Magnolia biondii HOM05D004374 ORTHO05D005430 1.1e-63 247.7 275 49.1
Nitab4.5_0000245g0210 Nicotiana tabacum HOM05D004374 ORTHO05D005430 1.1e-63 247.7 178 79.2
Lj3g0009396 Lotus japonicus HOM05D004374 ORTHO05D005430 2.5e-63 246.5 264 50.4
AL5G21410 Arabidopsis lyrata HOM05D004374 ORTHO05D005430 6.1e-62 241.9 249 49.8
EL10Ac8g18718 Beta vulgaris HOM05D004374 ORTHO05D005430 6.1e-62 241.9 287 45.3
Eucgr.C01384 Eucalyptus grandis HOM05D004374 ORTHO05D005430 7.9e-62 241.5 270 46.7
Lj3g0021552 Lotus japonicus HOM05D004374 ORTHO05D005430 7.9e-62 241.5 258 50.4
Sp5g09070 Schrenkiella parvula HOM05D004374 ORTHO05D005430 2.3e-61 240.0 244 51.2
Thhalv10010555m.g Eutrema salsugineum HOM05D004374 ORTHO05D005430 6.7e-61 238.4 245 50.6
AT3G53270 Arabidopsis thaliana HOM05D004374 ORTHO05D005430 8.8e-61 238.0 249 48.6
Lj7A483G16 Lonicera japonica HOM05D004374 ORTHO05D005430 1.5e-60 237.3 174 66.1
Nitab4.5_0000245g0220 Nicotiana tabacum HOM05D004374 ORTHO05D005430 2.0e-60 236.9 124 94.4
Carub.0005s1981 Capsella rubella HOM05D004374 ORTHO05D005430 2.5e-60 236.5 289 44.6
PGSC0003DMG400020805 Solanum tuberosum HOM05D004374 ORTHO05D005430 2.5e-60 236.5 216 63.4
BraA07t29837Z Brassica rapa HOM05D004374 ORTHO05D005430 7.4e-60 235.0 248 49.6
A07p21500 Brassica napus HOM05D004374 ORTHO05D005430 1.3e-59 234.2 283 46.3
HPP92_020472 Vanilla planifolia HOM05D004374 ORTHO05D005430 2.2e-59 233.4 250 47.2
Zm00001eb288690 Zea mays HOM05D004374 ORTHO05D005430 2.2e-59 233.4 255 45.1
C06p21110 Brassica napus HOM05D004374 ORTHO05D005430 4.8e-59 232.3 283 46.3
HPP92_026160 Vanilla planifolia HOM05D004374 ORTHO05D005430 4.8e-59 232.3 250 47.2
BolC6t37295H Brassica oleracea HOM05D004374 ORTHO05D005430 6.3e-59 231.9 280 46.1
CiPaw.05G118700 Carya illinoinensis HOM05D004374 ORTHO05D005430 8.2e-59 231.5 171 64.3
Zm00001eb030790 Zea mays HOM05D004374 ORTHO05D005430 1.1e-58 231.1 255 44.7
Zm00001eb030830 Zea mays HOM05D004374 ORTHO05D005430 1.1e-58 231.1 255 44.7
Lj5A680G20 Lonicera japonica HOM05D004374 ORTHO05D005430 1.4e-58 230.7 174 64.4
THA.LOC104826552 Tarenaya hassleriana HOM05D004374 ORTHO05D005430 1.8e-58 230.3 290 44.5
RcHm_v2.0_Chr2g0138971 Rosa chinensis HOM05D004374 ORTHO05D005430 2.4e-58 229.9 253 48.2
BcaB02g07796 Brassica carinata HOM05D004374 ORTHO05D005430 5.3e-58 228.8 248 48.8
Aa31LG9G14420 Aethionema arabicum HOM05D004374 ORTHO05D005430 1.2e-57 227.6 270 44.8
PSO478G4198 Papaver somniferum HOM05D004374 ORTHO05D005430 1.5e-57 227.3 293 43.3
ATR0307G110 Amborella trichopoda HOM05D004374 ORTHO05D005430 2.0e-57 226.9 251 47.0
AL5G34180 Arabidopsis lyrata HOM05D004374 ORTHO05D005430 2.0e-57 226.9 268 45.1
FAN05G4736 Fragaria x ananassa HOM05D004374 ORTHO05D005430 1.0e-56 224.6 296 44.6
COL.COLO4_35152 Corchorus olitorius HOM05D004374 ORTHO05D005430 2.9e-56 223.0 278 45.0
FvH4_6g31820 Fragaria vesca HOM05D004374 ORTHO05D005430 1.1e-55 221.1 253 47.8
FAN14G1328 Fragaria x ananassa HOM05D004374 ORTHO05D005430 1.1e-55 221.1 253 47.8
FAN02G2909 Fragaria x ananassa HOM05D004374 ORTHO05D005430 2.5e-55 219.9 253 47.8
Sp1g13120 Schrenkiella parvula HOM05D004374 ORTHO05D005430 1.6e-54 217.2 300 42.7
FAN09G4040 Fragaria x ananassa HOM05D004374 ORTHO05D005430 4.7e-54 215.7 253 46.6
Os10g0493800 Oryza sativa ssp. japonica HOM05D004374 ORTHO05D005430 6.7e-53 211.8 267 40.4
CAN.G778.6 Capsicum annuum HOM05D004374 ORTHO05D005430 6.3e-51 205.3 190 62.1
Thhalv10000991m.g Eutrema salsugineum HOM05D004374 ORTHO05D005430 1.2e-49 201.1 285 43.5
PSO017G1812 Papaver somniferum HOM05D004374 ORTHO05D005430 3.5e-49 199.5 243 46.5
SEGI_33846 Sequoiadendron giganteum HOM05D004374 ORTHO05D005430 2.2e-48 196.8 252 42.9
Gohir.A05G014400 Gossypium hirsutum HOM05D004374 ORTHO05D005430 1.4e-47 194.1 206 49.0
arahy.Tifrunner.gnm1.ann1.9N6VAH Arachis hypogaea HOM05D004374 ORTHO05D005430 2.5e-47 193.4 225 47.1
Carub.0001s3232 Capsella rubella HOM05D004374 ORTHO05D005430 1.6e-46 190.7 283 41.3
Actinidia40498 Actinidia chinensis HOM05D004374 ORTHO05D005430 4.4e-44 182.6 177 53.1
PSO384G0227 Papaver somniferum HOM05D004374 ORTHO05D005430 1.1e-42 177.9 209 45.9
Oeu032455.1 Olea europaea HOM05D004374 ORTHO05D005430 4.5e-41 172.6 103 76.7
Hund26613 Selenicereus undatus HOM05D004374 ORTHO05D005430 1.7e-40 170.6 253 39.9
CSS0004446 Camellia sinensis var. sinensis HOM05D004374 ORTHO05D005430 1.6e-38 164.1 150 57.3
Potri.004G126720 Populus trichocarpa HOM05D004374 ORTHO05D005430 4.7e-38 162.5 127 62.2
Oeu032454.1 Olea europaea HOM05D004374 ORTHO05D005430 5.2e-37 159.1 198 48.5
SEGI_36985 Sequoiadendron giganteum HOM05D004374 ORTHO05D005430 2.4e-34 150.2 269 36.4
AUR62013310 Chenopodium quinoa HOM05D004374 ORTHO05D005430 7.0e-34 148.7 196 42.9
Potri.004G126760 Populus trichocarpa HOM05D004374 ORTHO05D005430 4.2e-31 139.4 170 45.3
Actinidia21954 Actinidia chinensis HOM05D004374 ORTHO05D005430 1.6e-30 137.5 128 54.7
arahy.Tifrunner.gnm1.ann1.8FF2M6 Arachis hypogaea HOM05D004374 ORTHO05D005430 2.7e-30 136.7 186 43.5
CSS0020843 Camellia sinensis var. sinensis HOM05D004374 ORTHO05D005430 2.6e-28 130.2 239 37.2
Ah.09g224840 Amaranthus hybridus HOM05D004374 ORTHO05D005430 7.5e-28 128.6 325 28.6
CARHR163170 Cardamine hirsuta HOM05D004374 ORTHO05D005430 5.9e-25 119.0 169 39.6
Pp3c16_3150 Physcomitrium patens HOM05D004374 ORTHO05D005430 8.6e-24 115.2 280 30.4
CDE06G2323 Ceratophyllum demersum HOM05D004374 ORTHO05D005430 5.5e-23 112.5 251 31.1
Hund26538 Selenicereus undatus HOM05D004374 ORTHO05D005430 2.3e-21 107.1 178 36.0
Mapoly0001s0311 Marchantia polymorpha HOM05D004374 ORTHO05D005430 4.0e-21 106.3 312 28.8
Actinidia21955 Actinidia chinensis HOM05D004374 ORTHO05D005430 1.2e-20 104.8 86 61.6
Nn8g39548 Nelumbo nucifera HOM05D004374 ORTHO05D005430 1.5e-20 104.4 112 53.6
AagrBONN_evm.TU.Sc2ySwM_228.3625 Anthoceros agrestis HOM05D004374 ORTHO05D005430 6.3e-19 99.0 258 29.8
BcaC07g39690 Brassica carinata HOM05D004374 ORTHO05D005430 4.5e-17 92.8 141 41.8
Lj5C680T4 Lonicera japonica HOM05D004374 ORTHO05D005430 8.6e-16 88.6 118 47.5
CSS0024212 Camellia sinensis var. sinensis HOM05D004374 ORTHO05D005430 4.3e-15 86.3 73 63.0
C08p28500 Brassica napus HOM05D000209 ORTHO05D024195 5.6e-15 85.9 141 37.6
BolC8t50457H Brassica oleracea HOM05D000209 ORTHO05D024195 5.6e-15 85.9 141 37.6
CBR_g54313 Chara braunii HOM05D004374 ORTHO05D005430 4.7e-14 82.8 132 33.3
TWI09G0688 Tripterygium wilfordii HOM05D004374 ORTHO05D005430 1.0e-13 81.6 230 31.7
CSS0046554 Camellia sinensis var. sinensis HOM05D004374 ORTHO05D005430 2.3e-13 80.5 59 67.8
SMO358G0132 Selaginella moellendorffii HOM05D004374 ORTHO05D005430 8.9e-13 78.6 162 32.1
SHI22473 Sapria himalayana HOM05D004374 ORTHO05D005430 5.8e-12 75.9 66 56.1
BcaB07g32803 Brassica carinata HOM05D000209 ORTHO05D000129 4.9e-11 72.8 59 57.6
SHI22474 Sapria himalayana HOM05D004374 ORTHO05D005430 1.0e-08 65.1 40 75.0
C04p05170 Brassica napus HOM05D000111 ORTHO05D000134 5.6e-07 59.3 145 29.0
CARHR163160 Cardamine hirsuta HOM05D004374 ORTHO05D005430 2.1e-06 57.4 71 40.8


User provided reference genes

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