Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0005222g0030 Nicotiana tabacum HOM05D004048 ORTHO05D004859 7.1e-198 693.7 352 100.0
Nitab4.5_0000615g0020 Nicotiana tabacum HOM05D004048 ORTHO05D004859 5.3e-185 651.0 351 95.4
CAN.G439.29 Capsicum annuum HOM05D004048 ORTHO05D004859 1.5e-174 616.3 351 89.5
Solyc09g007130.3 Solanum lycopersicum HOM05D004048 ORTHO05D004859 1.0e-172 610.1 352 88.9
Peaxi162Scf00217g00711 Petunia axillaris HOM05D004048 ORTHO05D004859 6.7e-172 607.4 351 89.5
PGSC0003DMG400002011 Solanum tuberosum HOM05D004048 ORTHO05D004859 7.4e-171 604.0 351 87.7
CSS0027402 Camellia sinensis var. sinensis HOM05D004048 ORTHO05D004859 1.5e-155 553.1 354 81.6
CSS0029554 Camellia sinensis var. sinensis HOM05D004048 ORTHO05D004859 2.0e-155 552.7 350 81.7
Dinv32522 Davidia involucrata HOM05D004048 ORTHO05D004859 4.4e-155 551.6 351 80.9
MD07G1131200 Malus domestica HOM05D004048 ORTHO05D004859 9.8e-155 550.4 330 85.8
Lj9C589T5 Lonicera japonica HOM05D004048 ORTHO05D004859 2.2e-154 549.3 327 85.0
Ciclev10020577m.g Citrus clementina HOM05D004048 ORTHO05D004859 4.1e-153 545.0 326 84.0
vmacro13227 Vaccinium macrocarpon HOM05D004048 ORTHO05D004859 5.4e-153 544.7 350 80.3
Cc02_g21240 Coffea canephora HOM05D004048 ORTHO05D004859 9.1e-153 543.9 323 85.4
Potri.014G090500 Populus trichocarpa HOM05D004048 ORTHO05D004859 1.6e-152 543.1 342 81.3
Sp5g01880 Schrenkiella parvula HOM05D004048 ORTHO05D004859 1.6e-152 543.1 350 81.1
Manes.05G029300 Manihot esculenta HOM05D004048 ORTHO05D004859 4.5e-152 541.6 351 80.1
Migut.B01799 Erythranthe guttata HOM05D004048 ORTHO05D004859 5.9e-152 541.2 342 81.9
COL.COLO4_12778 Corchorus olitorius HOM05D004048 ORTHO05D004859 7.7e-152 540.8 351 79.8
TWI23G0617 Tripterygium wilfordii HOM05D004048 ORTHO05D004859 7.7e-152 540.8 336 82.7
BcaB02g07374 Brassica carinata HOM05D004048 ORTHO05D004859 1.0e-151 540.4 344 80.8
BolC6t37921H Brassica oleracea HOM05D004048 ORTHO05D004859 1.7e-151 539.7 344 80.5
BraA07t30196Z Brassica rapa HOM05D004048 ORTHO05D004859 1.7e-151 539.7 344 80.5
BcaC08g45130 Brassica carinata HOM05D004048 ORTHO05D004859 2.3e-151 539.3 344 80.5
Rhsim07G0205800 Rhododendron simsii HOM05D004048 ORTHO05D004859 2.9e-151 538.9 381 74.0
A07p25550 Brassica napus HOM05D004048 ORTHO05D004859 3.8e-151 538.5 344 80.2
Actinidia10075 Actinidia chinensis HOM05D004048 ORTHO05D004859 6.6e-151 537.7 346 79.8
THA.LOC104817317 Tarenaya hassleriana HOM05D004048 ORTHO05D004859 1.1e-150 537.0 345 80.0
A09p53600 Brassica napus HOM05D004048 ORTHO05D004859 1.5e-150 536.6 350 80.0
AL5G43890 Arabidopsis lyrata HOM05D004048 ORTHO05D004859 1.9e-150 536.2 326 83.1
C06p27540 Brassica napus HOM05D004048 ORTHO05D004859 1.9e-150 536.2 344 80.2
Sabra14G0065600 Salix brachista HOM05D004048 ORTHO05D004859 1.9e-150 536.2 335 81.5
Gohir.D08G043100 Gossypium hirsutum HOM05D004048 ORTHO05D004859 2.5e-150 535.8 323 84.2
Hund27241 Selenicereus undatus HOM05D004048 ORTHO05D004859 2.5e-150 535.8 348 79.6
Thecc.01G352400 Theobroma cacao HOM05D004048 ORTHO05D004859 2.5e-150 535.8 325 83.4
Gorai.004G041700 Gossypium raimondii HOM05D004048 ORTHO05D004859 5.6e-150 534.6 323 84.2
Hma1.2p1_0335F.1_g128890 Hydrangea macrophylla HOM05D004048 ORTHO05D004859 7.2e-150 534.3 322 82.9
Prupe.2G177600 Prunus persica HOM05D004048 ORTHO05D004859 7.2e-150 534.3 355 79.2
QL04p055532 Quercus lobata HOM05D004048 ORTHO05D004859 9.5e-150 533.9 347 79.3
Gohir.A08G032200 Gossypium hirsutum HOM05D004048 ORTHO05D004859 1.2e-149 533.5 323 83.0
BcaC07g40651 Brassica carinata HOM05D004048 ORTHO05D004859 2.1e-149 532.7 350 79.4
BolC8t51222H Brassica oleracea HOM05D004048 ORTHO05D004859 2.1e-149 532.7 350 79.4
TAR375G1056 Trochodendron aralioides HOM05D004048 ORTHO05D004859 2.1e-149 532.7 344 80.2
Sc01g0003210 Simmondsia chinensis HOM05D004048 ORTHO05D004859 2.8e-149 532.3 328 81.4
Thhalv10001521m.g Eutrema salsugineum HOM05D004048 ORTHO05D004859 4.7e-149 531.6 347 78.4
AT3G61530 Arabidopsis thaliana HOM05D004048 ORTHO05D004859 6.1e-149 531.2 346 78.6
FvH4_7g15370 Fragaria vesca HOM05D004048 ORTHO05D004859 6.1e-149 531.2 355 78.6
Sp4g28180 Schrenkiella parvula HOM05D004048 ORTHO05D004859 6.1e-149 531.2 343 79.3
AT2G46110 Arabidopsis thaliana HOM05D004048 ORTHO05D004859 8.0e-149 530.8 343 78.7
FAN06G1753 Fragaria x ananassa HOM05D004048 ORTHO05D004859 8.0e-149 530.8 355 78.6
MBI03_g34597_MAGBIO Magnolia biondii HOM05D004048 ORTHO05D004859 8.0e-149 530.8 348 78.4
Nn1g01686 Nelumbo nucifera HOM05D004048 ORTHO05D004859 8.0e-149 530.8 326 81.6
Aa31LG10G15450 Aethionema arabicum HOM05D004048 ORTHO05D004859 1.0e-148 530.4 326 82.2
C08p36390 Brassica napus HOM05D004048 ORTHO05D004859 1.0e-148 530.4 350 79.1
Duzib268G0835 Durio zibethinus HOM05D004048 ORTHO05D004859 1.0e-148 530.4 324 82.7
BraA09t40782Z Brassica rapa HOM05D004048 ORTHO05D004859 1.4e-148 530.0 350 79.7
CiPaw.02G034800 Carya illinoinensis HOM05D004048 ORTHO05D004859 1.4e-148 530.0 350 78.0
Haze_15565 Corylus avellana HOM05D004048 ORTHO05D004859 3.0e-148 528.9 363 76.0
SGA_v2.0_scaffold4G02279 Striga asiatica HOM05D004048 ORTHO05D004859 3.0e-148 528.9 353 77.9
FAN10G1698 Fragaria x ananassa HOM05D004048 ORTHO05D004859 5.2e-148 528.1 355 78.3
FAN10G3606 Fragaria x ananassa HOM05D004048 ORTHO05D004859 5.2e-148 528.1 355 78.3
PSO170G0644 Papaver somniferum HOM05D004048 ORTHO05D004859 6.8e-148 527.7 347 77.8
Carub.0004s2881 Capsella rubella HOM05D004048 ORTHO05D004859 1.2e-147 526.9 343 77.8
Sopen09g002000 Solanum pennellii HOM05D004048 ORTHO05D004859 1.5e-147 526.6 299 90.3
arahy.Tifrunner.gnm1.ann1.9CR96V Arachis hypogaea HOM05D004048 ORTHO05D004859 2.6e-147 525.8 346 77.5
EL10Ac1g00354 Beta vulgaris HOM05D004048 ORTHO05D004859 3.4e-147 525.4 336 78.0
PSO063G1481 Papaver somniferum HOM05D004048 ORTHO05D004859 5.7e-147 524.6 347 77.2
CsaV3_7G025860 Cucumis sativus L. HOM05D004048 ORTHO05D004859 7.5e-147 524.2 350 76.0
FAN03G0096 Fragaria x ananassa HOM05D004048 ORTHO05D004859 7.5e-147 524.2 330 81.8
arahy.Tifrunner.gnm1.ann1.8BBS1S Arachis hypogaea HOM05D004048 ORTHO05D004859 1.3e-146 523.5 346 77.2
RcHm_v2.0_Chr1g0357691 Rosa chinensis HOM05D004048 ORTHO05D004859 1.3e-146 523.5 330 81.2
Aqoxy5G04084 Aquilegia oxysepala HOM05D004048 ORTHO05D004859 1.7e-146 523.1 338 79.9
Oeu054354.2 Olea europaea HOM05D004048 ORTHO05D004859 2.2e-146 522.7 370 74.6
Eucgr.B01988 Eucalyptus grandis HOM05D004048 ORTHO05D004859 1.4e-145 520.0 326 80.7
PGR004G0897 Punica granatum HOM05D004048 ORTHO05D004859 1.4e-145 520.0 338 77.5
FAN06G0189 Fragaria x ananassa HOM05D004048 ORTHO05D004859 2.4e-145 519.2 372 74.7
DCAR_025214 Daucus carota HOM05D004048 ORTHO05D004859 4.1e-145 518.5 345 76.8
HanXRQChr17g0562171 Helianthus annuus HOM05D004048 ORTHO05D004859 5.4e-145 518.1 325 81.5
Carub.0005s2822 Capsella rubella HOM05D004048 ORTHO05D004859 9.2e-145 517.3 323 80.5
AUR62004413 Chenopodium quinoa HOM05D004048 ORTHO05D004859 1.2e-144 516.9 333 78.7
Lj1g0027864 Lotus japonicus HOM05D004048 ORTHO05D004859 4.6e-144 515.0 328 79.0
Gohir.D08G154300 Gossypium hirsutum HOM05D004048 ORTHO05D004859 5.9e-144 514.6 325 79.7
Gorai.004G160400 Gossypium raimondii HOM05D004048 ORTHO05D004859 5.9e-144 514.6 325 79.7
Atru.chr7.1494 Acer truncatum HOM05D004048 ORTHO05D004859 5.0e-143 511.5 330 78.5
Psat4g156920 Pisum sativum HOM05D004048 ORTHO05D004859 6.6e-143 511.1 351 74.9
TPR.G28287 Trifolium pratense HOM05D004048 ORTHO05D004859 1.5e-142 510.0 351 75.8
arahy.Tifrunner.gnm1.ann1.8G3C0P Arachis hypogaea HOM05D004048 ORTHO05D004859 2.5e-142 509.2 328 77.7
Lj5g0009706 Lotus japonicus HOM05D004048 ORTHO05D004859 2.5e-142 509.2 328 79.3
VMungo0331G0386 Vigna mungo HOM05D004048 ORTHO05D004859 2.5e-142 509.2 330 79.1
Lalb_Chr17g0338041 Lupinus albus HOM05D004048 ORTHO05D004859 4.3e-142 508.4 351 75.2
CANSAT56G4107 Cannabis sativa HOM05D004048 ORTHO05D004859 9.5e-142 507.3 329 79.6
BcaC07g40671 Brassica carinata HOM05D004048 ORTHO05D004859 4.7e-141 505.0 357 75.9
Lsat_1_v5_gn_4_35260 Lactuca sativa HOM05D004048 ORTHO05D004859 4.7e-141 505.0 346 75.1
Medtr8g028555 Medicago truncatula HOM05D004048 ORTHO05D004859 8.0e-141 504.2 344 76.2
MELO3C014805.2 Cucumis melo HOM05D004048 ORTHO05D004859 2.3e-140 502.7 338 75.4
Glyma.07G064600 Glycine max HOM05D004048 ORTHO05D004859 2.3e-140 502.7 327 77.4
Duzib138G1147 Durio zibethinus HOM05D004048 ORTHO05D004859 5.2e-140 501.5 358 73.2
RcHm_v2.0_Chr1g0357711 Rosa chinensis HOM05D004048 ORTHO05D004859 4.4e-139 498.4 329 76.6
Ca_03490_v3 Cicer arietinum L. HOM05D004048 ORTHO05D004859 7.5e-139 497.7 377 70.6
TPR.G37181 Trifolium pratense HOM05D004048 ORTHO05D004859 1.4e-137 493.4 351 73.2
Rhsim07G0010400 Rhododendron simsii HOM05D004048 ORTHO05D004859 4.1e-137 491.9 345 75.1
HPP92_005267 Vanilla planifolia HOM05D004048 ORTHO05D004859 5.4e-137 491.5 323 75.9
AUR62022619 Chenopodium quinoa HOM05D004048 ORTHO05D004859 2.3e-135 486.1 297 81.1
MELO3C012767.2 Cucumis melo HOM05D004048 ORTHO05D004859 3.9e-135 485.3 399 65.7
Rhsim07G0206900 Rhododendron simsii HOM05D004048 ORTHO05D004859 2.1e-133 479.6 398 65.8
SEGI_12250 Sequoiadendron giganteum HOM05D004048 ORTHO05D004859 1.3e-130 470.3 325 71.1
FvH4_7g15371 Fragaria vesca HOM05D004048 ORTHO05D004859 4.9e-130 468.4 353 68.6
unitig_60.g25627 Utricularia gibba HOM05D004048 ORTHO05D004859 2.4e-129 466.1 336 72.9
CARHR107270 Cardamine hirsuta HOM05D004048 ORTHO05D004859 9.2e-129 464.2 330 75.2
ClCG09G009090 Citrullus lanatus HOM05D004048 ORTHO05D004859 1.0e-127 460.7 339 71.1
Ah.05g180160 Amaranthus hybridus HOM05D004048 ORTHO05D004859 2.1e-125 453.0 343 69.4
Phvul.010G104900 Phaseolus vulgaris HOM05D004048 ORTHO05D004859 6.2e-125 451.4 289 80.6
FAN10G3616 Fragaria x ananassa HOM05D004048 ORTHO05D004859 1.2e-120 437.2 356 64.9
Pp3c7_220 Physcomitrium patens HOM05D004048 ORTHO05D004859 3.5e-120 435.6 340 64.7
Mapoly0035s0043 Marchantia polymorpha HOM05D004048 ORTHO05D004859 6.6e-119 431.4 322 67.1
Cpa.g.sc11.73 Carica papaya HOM05D004048 ORTHO05D004859 8.6e-119 431.0 332 70.8
SMO144G0210 Selaginella moellendorffii HOM05D004048 ORTHO05D004859 9.6e-118 427.6 324 65.4
AagrBONN_evm.TU.Sc2ySwM_117.2358 Anthoceros agrestis HOM05D004048 ORTHO05D004859 1.5e-115 420.2 350 62.6
AagrBONN_evm.TU.Sc2ySwM_117.1042 Anthoceros agrestis HOM05D004048 ORTHO05D004859 5.8e-115 418.3 350 62.3
GSVIVG01026967001 Vitis vinifera HOM05D004048 ORTHO05D004859 3.8e-114 415.6 257 82.9
Os01g0225500 Oryza sativa ssp. japonica HOM05D004048 ORTHO05D004859 3.2e-113 412.5 306 69.3
Glyma.09G254700 Glycine max HOM05D004048 ORTHO05D004859 1.2e-112 410.6 304 70.1
BcaC07g42671 Brassica carinata HOM05D004048 ORTHO05D004859 3.5e-112 409.1 325 67.7
ECA234G0147 Erigeron canadensis HOM05D004048 ORTHO05D004859 1.3e-111 407.1 283 76.7
MCO13G154 Micromonas commoda HOM05D004048 ORTHO05D004859 5.6e-110 401.7 321 63.9
Gohir.A08G133000 Gossypium hirsutum HOM05D004048 ORTHO05D004859 1.2e-107 394.0 257 78.6
Cre12.g508550 Chlamydomonas reinhardtii HOM05D004048 ORTHO05D004859 4.4e-107 392.1 325 59.7
CBR_g45417 Chara braunii HOM05D004048 ORTHO05D004859 3.2e-105 386.0 316 60.1
Nn6g32447 Nelumbo nucifera HOM05D004048 ORTHO05D004859 1.3e-103 380.6 325 64.3
CDE11G0110 Ceratophyllum demersum HOM05D004048 ORTHO05D004859 2.8e-101 372.9 249 77.9
Eucgr.B01984 Eucalyptus grandis HOM05D004048 ORTHO05D004859 3.6e-101 372.5 350 59.7
Zm00001eb339000 Zea mays HOM05D004048 ORTHO05D004859 1.1e-100 370.9 244 79.9
FAN06G1997 Fragaria x ananassa HOM05D004048 ORTHO05D004859 9.0e-100 367.9 363 55.9
SMO356G0035 Selaginella moellendorffii HOM05D004048 ORTHO05D004859 2.0e-99 366.7 304 62.2
ATR0751G082 Amborella trichopoda HOM05D004048 ORTHO05D004859 4.5e-99 365.5 242 78.1
Medtr4g037305 Medicago truncatula HOM05D004048 ORTHO05D004859 1.3e-98 364.0 241 77.6
SMO119G0299 Selaginella moellendorffii HOM05D004048 ORTHO05D004859 2.4e-97 359.8 273 64.8
FAN06G4041 Fragaria x ananassa HOM05D004048 ORTHO05D004859 6.7e-95 351.7 301 63.1
SEGI_21771 Sequoiadendron giganteum HOM05D004048 ORTHO05D004859 1.3e-93 347.4 238 73.9
FAN10G1509 Fragaria x ananassa HOM05D004048 ORTHO05D004859 2.6e-91 339.7 240 74.2
ATR0751G137 Amborella trichopoda HOM05D004048 ORTHO05D004859 6.5e-90 335.1 237 73.0
PRCOL_00005166 Prasinoderma coloniale HOM05D004048 ORTHO05D004859 2.7e-88 329.7 320 54.1
AL4G45340 Arabidopsis lyrata HOM05D004048 ORTHO05D004859 4.8e-85 318.9 196 81.6
Eucgr.B01986 Eucalyptus grandis HOM05D004048 ORTHO05D004859 5.9e-75 285.4 286 58.0
Medtr4g037245 Medicago truncatula HOM05D004048 ORTHO05D004859 6.5e-66 255.4 203 70.0
PGSC0003DMG400018716 Solanum tuberosum HOM05D004048 ORTHO05D004859 1.8e-60 237.3 129 89.9
SEGI_25526 Sequoiadendron giganteum HOM05D004048 ORTHO05D004859 3.5e-59 233.0 161 68.9
Cfa001640 Carpinus fangiana HOM05D004048 ORTHO05D004859 2.3e-55 220.3 307 42.7
TPR.G28294 Trifolium pratense HOM05D004048 ORTHO05D004859 2.4e-52 210.3 253 52.2
Os01g0225400 Oryza sativa ssp. japonica HOM05D004048 ORTHO05D004859 4.1e-52 209.5 126 81.7
arahy.Tifrunner.gnm1.ann1.CIF5FW Arachis hypogaea HOM05D004048 ORTHO05D004859 5.3e-52 209.1 161 65.8
Cfa003872 Carpinus fangiana HOM05D004048 ORTHO05D004859 6.5e-50 202.2 361 41.3
SHI16536 Sapria himalayana HOM05D004048 ORTHO05D004859 4.2e-41 172.9 111 74.8
Haze_27487 Corylus avellana HOM05D004048 ORTHO05D004859 5.7e-38 162.5 233 38.2
Lj6g0001313 Lotus japonicus HOM05D004048 ORTHO05D004859 2.7e-35 153.7 97 71.1
FAN01G2460 Fragaria x ananassa HOM05D004048 ORTHO05D004859 3.5e-35 153.3 92 80.4
Haze_26957 Corylus avellana HOM05D005470 ORTHO05D006855 3.8e-34 149.8 217 42.4
Medtr4g037315 Medicago truncatula HOM05D004048 ORTHO05D004859 9.5e-33 145.2 96 69.8
MBI17_g16531_MAGBIO Magnolia biondii HOM05D004048 ORTHO05D004859 1.0e-31 141.7 108 70.4
Ca_03489_v3 Cicer arietinum L. HOM05D004048 ORTHO05D004859 1.4e-31 141.4 110 70.0
CAN.G439.28 Capsicum annuum HOM05D004048 ORTHO05D004859 8.9e-31 138.7 73 89.0
MBI12_g43904_MAGBIO Magnolia biondii HOM05D004048 ORTHO05D004859 1.1e-28 131.7 96 72.9
Actinidia20163 Actinidia chinensis HOM05D004048 ORTHO05D004859 3.2e-28 130.2 179 51.4
arahy.Tifrunner.gnm1.ann1.63JPLQ Arachis hypogaea HOM05D004048 ORTHO05D004859 4.6e-27 126.3 82 69.5
Medtr4g037275 Medicago truncatula HOM05D004048 ORTHO05D004859 1.2e-22 111.7 61 88.5
AL4G45350 Arabidopsis lyrata HOM05D004048 ORTHO05D038698 7.5e-22 109.0 75 68.0
SGA_v2.0_scaffold4G02383 Striga asiatica HOM05D004048 ORTHO05D051375 6.4e-21 105.9 63 88.9
arahy.Tifrunner.gnm1.ann1.DMYH1R Arachis hypogaea HOM05D004048 ORTHO05D004859 2.7e-19 100.5 73 64.4
FAN10G2371 Fragaria x ananassa HOM05D004048 ORTHO05D038698 6.0e-19 99.4 73 65.8
HanXRQChr15g0474641 Helianthus annuus HOM05D004048 ORTHO05D004859 1.0e-18 98.6 62 82.3
ATR0751G274 Amborella trichopoda HOM05D004048 ORTHO05D004859 8.6e-18 95.5 73 57.5
Potri.002G164601 Populus trichocarpa HOM05D004048 ORTHO05D004859 1.1e-17 95.1 72 62.5
DCAR_025216 Daucus carota HOM05D003118 ORTHO05D003618 1.4e-15 88.2 78 67.9
arahy.Tifrunner.gnm1.ann1.GKUV9U Arachis hypogaea HOM05D004048 ORTHO05D004859 4.7e-08 63.2 50 64.0


User provided reference genes

Program Settings