Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0005206g0040 Nicotiana tabacum HOM05D004552 ORTHO05D005501 4.6e-201 704.5 399 100.0
Nitab4.5_0001952g0150 Nicotiana tabacum HOM05D004552 ORTHO05D005501 1.4e-197 693.0 399 97.2
Nitab4.5_0008076g0010 Nicotiana tabacum HOM05D004552 ORTHO05D005501 3.0e-176 622.1 400 87.8
Nitab4.5_0006780g0010 Nicotiana tabacum HOM05D004552 ORTHO05D005501 1.2e-172 610.1 400 87.5
Sopen02g031920 Solanum pennellii HOM05D004552 ORTHO05D005501 3.2e-170 602.1 403 86.6
Solyc02g087180.4 Solanum lycopersicum HOM05D004552 ORTHO05D005501 1.5e-167 593.2 401 85.3
CAN.G525.45 Capsicum annuum HOM05D004552 ORTHO05D005501 1.9e-167 592.8 403 84.4
Peaxi162Scf00569g00015 Petunia axillaris HOM05D004552 ORTHO05D005501 1.6e-166 589.7 403 84.6
CAN.G206.55 Capsicum annuum HOM05D004552 ORTHO05D005501 7.2e-162 574.3 403 82.9
Solyc04g014240.1 Solanum lycopersicum HOM05D004552 ORTHO05D005501 3.1e-157 558.9 403 81.6
Sopen04g006350 Solanum pennellii HOM05D004552 ORTHO05D005501 1.7e-155 553.1 403 81.1
Dinv37242 Davidia involucrata HOM05D004552 ORTHO05D005501 1.0e-144 517.3 412 74.5
Oeu029550.1 Olea europaea HOM05D004552 ORTHO05D005501 5.7e-143 511.5 412 75.5
Actinidia19722 Actinidia chinensis HOM05D004552 ORTHO05D005501 1.4e-141 506.9 412 71.6
Rhsim10G0168100 Rhododendron simsii HOM05D004552 ORTHO05D005501 3.1e-141 505.8 407 73.2
MSTRG.16520 Avicennia marina HOM05D004552 ORTHO05D005501 2.6e-140 502.7 413 72.6
Rhsim11G0041500 Rhododendron simsii HOM05D004552 ORTHO05D005501 2.6e-140 502.7 407 73.0
PGSC0003DMG400000510 Solanum tuberosum HOM05D004552 ORTHO05D005501 7.7e-140 501.1 326 86.5
Oeu026072.1 Olea europaea HOM05D004552 ORTHO05D005501 1.2e-137 493.8 410 73.7
Rhsim11G0041800 Rhododendron simsii HOM05D004552 ORTHO05D005501 1.2e-135 487.3 405 71.6
Cc00_g23990 Coffea canephora HOM05D004552 ORTHO05D005501 2.2e-131 473.0 412 70.6
HanXRQChr05g0156781 Helianthus annuus HOM05D004552 ORTHO05D005501 2.6e-127 459.5 403 68.0
TWI53G0358 Tripterygium wilfordii HOM05D004552 ORTHO05D005501 4.4e-127 458.8 423 68.3
DCAR_009290 Daucus carota HOM05D004552 ORTHO05D005501 7.5e-127 458.0 411 67.2
CSS0033785 Camellia sinensis var. sinensis HOM05D004552 ORTHO05D005501 1.7e-126 456.8 412 67.0
PGR004G2024 Punica granatum HOM05D004552 ORTHO05D005501 2.8e-126 456.1 411 67.2
Lsat_1_v5_gn_5_8941 Lactuca sativa HOM05D004552 ORTHO05D005501 4.1e-125 452.2 401 67.1
TAR369G0596 Trochodendron aralioides HOM05D004552 ORTHO05D005501 7.0e-125 451.4 415 68.7
Thecc.05G052700 Theobroma cacao HOM05D004552 ORTHO05D005501 1.2e-124 450.7 420 67.4
Migut.K00511 Erythranthe guttata HOM05D004552 ORTHO05D005501 3.5e-124 449.1 409 67.2
ClCG04G008790 Citrullus lanatus HOM05D004552 ORTHO05D005501 1.7e-123 446.8 410 65.9
ClCG10G016170 Citrullus lanatus HOM05D004552 ORTHO05D005501 2.5e-122 443.0 404 67.1
Hund08942 Selenicereus undatus HOM05D004552 ORTHO05D005501 5.6e-122 441.8 412 66.7
unitig_899.g15236 Utricularia gibba HOM05D004552 ORTHO05D005501 4.7e-121 438.7 409 66.0
Atru.chr8.2543 Acer truncatum HOM05D004552 ORTHO05D005501 8.0e-121 438.0 421 64.1
DCAR_002493 Daucus carota HOM05D004552 ORTHO05D005501 1.0e-120 437.6 411 64.5
Ciclev10011831m.g Citrus clementina HOM05D004552 ORTHO05D005501 1.4e-120 437.2 418 65.6
EL10Ac7g16819 Beta vulgaris HOM05D004552 ORTHO05D005501 2.3e-120 436.4 409 64.1
SalBow4G1233 Salvia bowleyana HOM05D004552 ORTHO05D005501 2.0e-119 433.3 407 64.4
QL07p045485 Quercus lobata HOM05D004552 ORTHO05D005501 2.6e-119 433.0 413 66.1
ECA246G2681 Erigeron canadensis HOM05D003206 ORTHO05D005207 7.5e-119 431.4 404 66.3
CiPaw.09G181100 Carya illinoinensis HOM05D004552 ORTHO05D005501 2.2e-118 429.9 410 68.5
MELO3C014263.2 Cucumis melo HOM05D004552 ORTHO05D005501 4.9e-118 428.7 410 65.1
Haze_20666 Corylus avellana HOM05D004552 ORTHO05D005501 6.4e-118 428.3 409 68.0
CsaV3_4G024350 Cucumis sativus L. HOM05D004552 ORTHO05D005501 8.3e-118 427.9 407 65.8
Duzib106G1297 Durio zibethinus HOM05D004552 ORTHO05D005501 1.4e-117 427.2 415 66.0
Sed0010830 Sechium edule HOM05D004552 ORTHO05D005501 1.4e-117 427.2 408 64.0
AUR62025361 Chenopodium quinoa HOM05D004552 ORTHO05D005501 1.8e-117 426.8 411 64.2
arahy.Tifrunner.gnm1.ann1.CZIV0N Arachis hypogaea HOM05D004552 ORTHO05D005501 9.2e-117 424.5 407 67.3
Cfa017496 Carpinus fangiana HOM05D004552 ORTHO05D005501 9.2e-117 424.5 408 65.2
arahy.Tifrunner.gnm1.ann1.URH0Q0 Arachis hypogaea HOM05D004552 ORTHO05D005501 1.6e-116 423.7 407 67.1
THA.LOC104823245 Tarenaya hassleriana HOM05D004552 ORTHO05D005501 1.6e-116 423.7 426 63.4
arahy.Tifrunner.gnm1.ann1.LN9G9C Arachis hypogaea HOM05D004552 ORTHO05D005501 4.6e-116 422.2 407 67.1
arahy.Tifrunner.gnm1.ann1.6MTV2V Arachis hypogaea HOM05D004552 ORTHO05D005501 5.9e-116 421.8 407 67.1
AUR62028362 Chenopodium quinoa HOM05D004552 ORTHO05D005501 5.9e-116 421.8 409 63.8
Ah.14g084480 Amaranthus hybridus HOM05D004552 ORTHO05D005501 2.1e-113 413.3 407 61.7
PSO832G0086 Papaver somniferum HOM05D004552 ORTHO05D005501 2.8e-113 412.9 420 62.9
Potri.016G084200 Populus trichocarpa HOM05D004552 ORTHO05D005501 8.0e-113 411.4 402 63.7
Nn1g07079 Nelumbo nucifera HOM05D004552 ORTHO05D005501 3.1e-112 409.5 420 63.8
RcHm_v2.0_Chr1g0360161 Rosa chinensis HOM05D004552 ORTHO05D005501 3.1e-112 409.5 411 62.5
PSO210G6420 Papaver somniferum HOM05D004552 ORTHO05D005501 8.9e-112 407.9 421 62.0
VMungo0251G2800 Vigna mungo HOM05D004552 ORTHO05D005501 1.5e-111 407.1 400 62.5
RcHm_v2.0_Chr1g0361081 Rosa chinensis HOM05D004552 ORTHO05D005501 1.3e-110 404.1 409 63.3
Glyma.08G287300 Glycine max HOM05D004552 ORTHO05D005501 1.7e-110 403.7 402 62.9
Lj3g0026232 Lotus japonicus HOM05D004552 ORTHO05D005501 2.2e-110 403.3 410 61.7
Lj5g0019559 Lotus japonicus HOM05D004552 ORTHO05D005501 6.4e-110 401.7 410 61.5
Manes.09G079900 Manihot esculenta HOM05D004552 ORTHO05D005501 6.4e-110 401.7 411 61.1
Sc07g0006230 Simmondsia chinensis HOM05D004552 ORTHO05D005501 8.3e-110 401.4 412 64.1
Medtr8g075790 Medicago truncatula HOM05D004552 ORTHO05D005501 1.1e-109 401.0 411 61.3
CANSAT56G3582 Cannabis sativa HOM05D004552 ORTHO05D005501 1.4e-109 400.6 406 65.0
Ca_22379_v3 Cicer arietinum L. HOM05D004552 ORTHO05D005501 1.4e-109 400.6 411 61.8
SGA_v2.0_scaffold204G41624 Striga asiatica HOM05D004552 ORTHO05D005501 3.2e-109 399.4 410 63.7
Medtr6g089780 Medicago truncatula HOM05D004552 ORTHO05D005501 7.0e-109 398.3 411 60.8
Ca_19605_v3 Cicer arietinum L. HOM05D004552 ORTHO05D005501 9.2e-109 397.9 411 61.8
Cc03_g15870 Coffea canephora HOM05D004552 ORTHO05D005501 1.6e-108 397.1 412 63.6
Lj4g0012826 Lotus japonicus HOM05D004552 ORTHO05D005501 2.0e-108 396.7 410 61.2
BcaC06g32015 Brassica carinata HOM05D004552 ORTHO05D005501 4.6e-108 395.6 422 61.8
C09p73810 Brassica napus HOM05D004552 ORTHO05D005501 4.6e-108 395.6 427 61.4
BolC9t60115H Brassica oleracea HOM05D004552 ORTHO05D005501 4.6e-108 395.6 427 61.4
Prupe.2G197600 Prunus persica HOM05D004552 ORTHO05D005501 4.6e-108 395.6 416 61.8
Sp6g39730 Schrenkiella parvula HOM05D004552 ORTHO05D005501 1.0e-107 394.4 429 62.0
COL.COLO4_27097 Corchorus olitorius HOM05D004552 ORTHO05D005501 1.7e-107 393.7 337 70.0
Phvul.003G261400 Phaseolus vulgaris HOM05D004552 ORTHO05D005501 1.7e-107 393.7 404 63.1
CARHR210480 Cardamine hirsuta HOM05D004552 ORTHO05D005501 2.3e-107 393.3 427 61.4
Manes.08G002200 Manihot esculenta HOM05D004552 ORTHO05D005501 3.0e-107 392.9 403 62.3
Gohir.A03G063400 Gossypium hirsutum HOM05D004552 ORTHO05D005501 5.0e-107 392.1 353 66.3
Thhalv10013588m.g Eutrema salsugineum HOM05D004552 ORTHO05D005501 1.9e-106 390.2 437 59.3
Glyma.06G188800 Glycine max HOM05D004552 ORTHO05D005501 2.5e-106 389.8 402 61.2
Gorai.003G108400 Gossypium raimondii HOM05D004552 ORTHO05D005501 4.3e-106 389.0 353 66.3
AT5G02850 Arabidopsis thaliana HOM05D004552 ORTHO05D005501 7.3e-106 388.3 413 61.7
Glyma.13G067700 Glycine max HOM05D004552 ORTHO05D005501 7.3e-106 388.3 402 61.4
TPR.G33503 Trifolium pratense HOM05D004552 ORTHO05D005501 1.6e-105 387.1 411 60.3
Gohir.D03G102900 Gossypium hirsutum HOM05D004552 ORTHO05D005501 2.1e-105 386.7 353 66.0
AL6G12120 Arabidopsis lyrata HOM05D004552 ORTHO05D005501 3.6e-105 386.0 415 61.0
FAN03G3426 Fragaria x ananassa HOM05D004552 ORTHO05D005501 1.1e-104 384.4 412 60.0
FvH4_7g16920 Fragaria vesca HOM05D004552 ORTHO05D005501 6.8e-104 381.7 411 60.1
Lalb_Chr05g0229841 Lupinus albus HOM05D004552 ORTHO05D005501 1.2e-103 380.9 413 59.6
A10p32880 Brassica napus HOM05D004552 ORTHO05D005501 2.6e-103 379.8 429 60.1
Aa31LG1G22060 Aethionema arabicum HOM05D004552 ORTHO05D005501 3.4e-103 379.4 417 60.9
FAN01G0370 Fragaria x ananassa HOM05D004552 ORTHO05D005501 3.4e-103 379.4 411 59.9
Psat7g019080 Pisum sativum HOM05D004552 ORTHO05D005501 5.8e-103 378.6 431 58.2
FAN06G4506 Fragaria x ananassa HOM05D004552 ORTHO05D005501 3.7e-102 375.9 411 59.6
FAN06G3324 Fragaria x ananassa HOM05D004552 ORTHO05D005501 1.4e-101 374.0 401 60.1
Carub.0006s0165 Capsella rubella HOM05D004552 ORTHO05D005501 2.4e-101 373.2 419 59.9
vmacro04719 Vaccinium macrocarpon HOM05D004552 ORTHO05D005501 4.1e-101 372.5 324 71.0
FvH4_7g17650 Fragaria vesca HOM05D004552 ORTHO05D005501 7.8e-100 368.2 407 58.7
Aqoxy4G02198 Aquilegia oxysepala HOM05D004552 ORTHO05D005501 6.6e-99 365.2 430 57.9
TPR.G27980 Trifolium pratense HOM05D004552 ORTHO05D005501 1.1e-98 364.4 332 61.4
CDE04G3741 Ceratophyllum demersum HOM05D004552 ORTHO05D005501 2.5e-98 363.2 410 58.3
Lj6g0002066 Lotus japonicus HOM05D004552 ORTHO05D005501 3.6e-97 359.4 410 56.1
Manes.09G080009 Manihot esculenta HOM05D004552 ORTHO05D005501 6.8e-96 355.1 339 62.5
Eucgr.J03059 Eucalyptus grandis HOM05D004552 ORTHO05D005501 8.9e-96 354.8 438 56.4
Sabra16G0091200 Salix brachista HOM05D004552 ORTHO05D005501 1.2e-95 354.4 327 64.8
FAN03G1811 Fragaria x ananassa HOM05D004552 ORTHO05D005501 5.8e-95 352.1 404 56.7
FAN06G0991 Fragaria x ananassa HOM05D004552 ORTHO05D005501 9.9e-95 351.3 404 58.7
arahy.Tifrunner.gnm1.ann1.52IM1F Arachis hypogaea HOM05D004552 ORTHO05D005501 3.7e-94 349.4 315 67.3
SGA_v2.0_scaffold94G28661 Striga asiatica HOM05D004552 ORTHO05D005501 6.0e-92 342.0 333 67.0
Lj6g0014683 Lotus japonicus HOM05D004552 ORTHO05D005501 1.3e-91 340.9 336 58.0
SHI12593 Sapria himalayana HOM05D004552 ORTHO05D005501 3.0e-91 339.7 404 55.7
Psat4g100360 Pisum sativum HOM05D004552 ORTHO05D005501 6.6e-91 338.6 347 62.5
MBI18_g25517_MAGBIO Magnolia biondii HOM05D004552 ORTHO05D005501 4.3e-90 335.9 348 62.4
PSO675G1725 Papaver somniferum HOM05D004552 ORTHO05D005501 9.3e-85 318.2 352 55.1
Lj6g0013650 Lotus japonicus HOM05D004552 ORTHO05D005501 2.7e-84 316.6 410 53.4
HPP92_012944 Vanilla planifolia HOM05D004552 ORTHO05D005501 4.3e-74 282.7 342 53.2
Os09g0540500 Oryza sativa ssp. japonica HOM05D004552 ORTHO05D005501 1.6e-73 280.8 424 46.2
ATR0950G002 Amborella trichopoda HOM05D004552 ORTHO05D005501 4.0e-72 276.2 351 55.0
ATR0594G066 Amborella trichopoda HOM05D004552 ORTHO05D005501 9.0e-72 275.0 352 55.7
RhsimUnG0119000 Rhododendron simsii HOM05D004552 ORTHO05D005501 9.9e-71 271.6 237 68.4
Zm00001eb103820 Zea mays HOM05D004552 ORTHO05D005501 2.9e-70 270.0 343 50.4
SEGI_01207 Sequoiadendron giganteum HOM05D004552 ORTHO05D005501 4.3e-66 256.1 415 45.5
FAN01G0473 Fragaria x ananassa HOM05D004552 ORTHO05D005501 3.4e-63 246.5 402 47.8
CDE07G0444 Ceratophyllum demersum HOM05D004552 ORTHO05D005501 1.6e-60 237.7 314 53.2
CSS0042772 Camellia sinensis var. sinensis HOM05D004552 ORTHO05D005501 8.7e-59 231.9 229 60.7
A03p00930 Brassica napus HOM05D004552 ORTHO05D005501 1.0e-51 208.4 207 60.4
FvH4_6g20640 Fragaria vesca HOM05D004552 ORTHO05D005501 6.3e-49 199.1 244 52.0
FAN14G1867 Fragaria x ananassa HOM05D004552 ORTHO05D005501 1.2e-47 194.9 171 62.0
BcaB01g05872 Brassica carinata HOM05D004552 ORTHO05D005501 1.5e-47 194.5 284 50.7
Mapoly0007s0084 Marchantia polymorpha HOM05D004552 ORTHO05D005501 1.5e-47 194.5 269 43.5
THA.LOC104827455 Tarenaya hassleriana HOM05D004552 ORTHO05D005501 4.5e-47 193.0 212 57.5
PGSC0003DMG400023633 Solanum tuberosum HOM05D004552 ORTHO05D005501 1.0e-46 191.8 222 56.8
C03p01200 Brassica napus HOM05D004552 ORTHO05D005501 8.5e-46 188.7 273 52.7
BolC3t12680H Brassica oleracea HOM05D004552 ORTHO05D005501 8.5e-46 188.7 273 52.7
SEGI_11500 Sequoiadendron giganteum HOM05D004552 ORTHO05D005501 7.9e-44 182.2 338 43.2
Actinidia11233 Actinidia chinensis HOM05D004552 ORTHO05D005501 5.1e-43 179.5 337 43.6
Pp3c14_11490 Physcomitrium patens HOM05D004552 ORTHO05D005501 1.7e-41 174.5 347 41.2
AagrBONN_evm.TU.Sc2ySwM_362.1766 Anthoceros agrestis HOM05D004552 ORTHO05D005501 8.5e-38 162.2 260 38.8
Lsat_1_v5_gn_8_95200 Lactuca sativa HOM05D004552 ORTHO05D005501 2.6e-34 150.6 102 76.5
BraA03t09475Z Brassica rapa HOM05D004552 ORTHO05D005501 5.9e-31 139.4 197 50.3
VMungo0647G0506 Vigna mungo HOM05D004552 ORTHO05D005501 6.1e-28 129.4 106 66.0
BraA10t45325Z Brassica rapa HOM05D001414 ORTHO05D000619 1.8e-27 127.9 147 63.9
CBR_g38095 Chara braunii HOM05D004552 ORTHO05D005501 2.2e-25 120.9 249 33.7
Lj3E543T1 Lonicera japonica HOM05D004552 ORTHO05D005501 1.4e-19 101.7 107 71.0
AagrBONN_evm.TU.Sc2ySwM_344.2458 Anthoceros agrestis HOM05D004552 ORTHO05D005501 1.7e-14 84.7 216 27.3
Lsat_1_v5_gn_8_95180 Lactuca sativa HOM05D004552 ORTHO05D005501 2.5e-13 80.9 71 64.8
Nitab4.5_0006780g0020 Nicotiana tabacum HOM05D004552 ORTHO05D005501 1.2e-10 72.0 46 82.6
MCO09G463 Micromonas commoda HOM05D004552 ORTHO05D005501 4.5e-07 60.1 187 39.0


User provided reference genes

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